Wall clock time and date at job start Tue Mar 31 2020 14:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47184 * 2 1 4 4 C 1.52997 * 109.47570 * 59.99950 * 3 2 1 5 5 C 1.53000 * 109.47063 * 299.99579 * 3 2 1 6 6 C 1.50706 * 109.46956 * 179.97438 * 3 2 1 7 7 C 1.38233 * 120.00000 * 180.02562 * 6 3 2 8 8 C 1.38234 * 120.00229 * 179.97438 * 7 6 3 9 9 C 1.38227 * 119.99884 * 0.02562 * 8 7 6 10 10 S 1.76204 * 120.00156 * 179.97438 * 9 8 7 11 11 O 1.42100 * 106.40208 * 336.46276 * 10 9 8 12 12 O 1.42097 * 106.40458 * 203.54020 * 10 9 8 13 13 N 1.65600 * 107.21414 * 90.00145 * 10 9 8 14 14 C 1.46495 * 120.00241 * 65.00504 * 13 10 9 15 15 H 1.08997 * 109.47441 * 24.99439 * 14 13 10 16 16 C 1.53004 * 109.47054 * 264.99485 * 14 13 10 17 17 C 1.50697 * 109.47520 * 144.99537 * 14 13 10 18 18 H 1.07999 * 120.00158 * 5.35070 * 17 14 13 19 19 C 1.37881 * 120.00462 * 185.34841 * 17 14 13 20 20 N 1.31519 * 119.99492 * 5.14741 * 19 17 14 21 21 Si 1.86797 * 120.00069 * 185.14791 * 19 17 14 22 22 H 1.48501 * 109.47243 * 85.00288 * 21 19 17 23 23 H 1.48507 * 109.46766 * 204.99906 * 21 19 17 24 24 H 1.48491 * 109.47366 * 324.99740 * 21 19 17 25 25 C 1.38236 * 120.00231 * 0.25452 * 9 8 7 26 26 C 1.38232 * 120.00355 * 0.02562 * 6 3 2 27 27 H 1.09003 * 109.46756 * 60.00284 * 1 2 3 28 28 H 1.08995 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46918 * 300.00306 * 1 2 3 30 30 H 1.09004 * 109.47241 * 239.99750 * 2 1 3 31 31 H 1.09003 * 109.46756 * 119.99716 * 2 1 3 32 32 H 1.08995 * 109.47393 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.47021 * 300.00557 * 4 3 2 34 34 H 1.09003 * 109.47272 * 59.99732 * 4 3 2 35 35 H 1.08998 * 109.47232 * 299.99722 * 5 3 2 36 36 H 1.08997 * 109.47095 * 60.00486 * 5 3 2 37 37 H 1.09004 * 109.46978 * 180.02562 * 5 3 2 38 38 H 1.08008 * 119.99875 * 359.97438 * 7 6 3 39 39 H 1.08001 * 119.99915 * 180.02562 * 8 7 6 40 40 H 0.97000 * 119.99741 * 244.99545 * 13 10 9 41 41 H 1.08997 * 109.47156 * 294.96436 * 16 14 13 42 42 H 1.09006 * 109.46784 * 54.96916 * 16 14 13 43 43 H 1.09001 * 109.46961 * 174.96485 * 16 14 13 44 44 H 0.97003 * 119.99628 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.00261 * 179.72796 * 25 9 8 46 46 H 1.08007 * 119.99760 * 0.02562 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5301 2.1637 -1.2493 6 6 3.5471 1.4424 0.0006 7 6 4.2383 2.6395 0.0013 8 6 5.6206 2.6395 0.0024 9 6 6.3118 1.4424 0.0023 10 16 8.0738 1.4423 0.0031 11 8 8.4753 2.6922 -0.5408 12 8 8.4753 0.1928 -0.5415 13 7 8.5632 1.4418 1.5851 14 6 8.2675 0.2917 2.4430 15 1 8.1438 -0.5989 1.8269 16 6 6.9780 0.5554 3.2230 17 6 9.4046 0.0800 3.4091 18 1 10.2209 0.7862 3.4454 19 6 9.4028 -1.0152 4.2467 20 7 8.4627 -1.9280 4.1336 21 14 10.7355 -1.2024 5.5421 22 1 10.3501 -0.4478 6.7616 23 1 10.8988 -2.6393 5.8802 24 1 12.0171 -0.6694 5.0145 25 6 5.6206 0.2452 -0.0042 26 6 4.2383 0.2453 0.0006 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8931 3.1915 1.2489 33 1 0.4400 2.1637 1.2492 34 1 1.8934 1.6500 2.1392 35 1 1.8935 1.6498 -2.1392 36 1 0.4401 2.1637 -1.2493 37 1 1.8939 3.1912 -1.2495 38 1 3.6983 3.5749 0.0009 39 1 6.1606 3.5748 0.0033 40 1 9.0458 2.2030 1.9437 41 1 7.1306 1.3917 3.9053 42 1 6.1749 0.7966 2.5265 43 1 6.7097 -0.3341 3.7929 44 1 8.4613 -2.6983 4.7231 45 1 6.1606 -0.6900 -0.0087 46 1 3.6982 -0.6901 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074968089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:23 Heat of formation + Delta-G solvation = -91.870475 kcal Electronic energy + Delta-G solvation = -26394.260249 eV Core-core repulsion = 22795.197494 eV Total energy + Delta-G solvation = -3599.062755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01844 -38.31426 -37.94180 -37.22016 -36.90453 -34.11592 -32.53443 -31.99176 -30.31875 -30.11145 -28.14607 -27.21172 -25.84561 -24.00575 -23.04377 -22.78876 -20.61630 -19.77848 -19.25371 -18.89107 -17.78530 -17.20171 -16.81896 -16.64586 -15.98628 -15.66900 -15.62169 -15.33939 -14.79115 -14.56075 -14.52457 -14.45251 -14.29957 -14.05615 -13.67928 -13.45334 -13.22167 -13.13479 -13.06957 -12.92025 -12.85948 -12.77384 -12.70094 -12.45398 -12.39545 -12.30918 -12.07776 -12.00381 -11.95482 -11.53608 -11.43374 -11.24220 -11.14186 -10.58476 -10.19172 -10.02631 -9.96659 -8.16643 -6.27760 -0.51833 -0.14775 0.34276 1.45187 1.46043 1.55448 2.13787 2.44226 2.52575 2.85718 3.15452 3.39737 3.52849 3.67110 3.95381 4.03240 4.03457 4.29269 4.33870 4.45320 4.51796 4.54214 4.62220 4.69931 4.81422 4.85643 4.86547 4.89295 4.98719 5.00014 5.03429 5.10602 5.11720 5.12455 5.17453 5.18619 5.26255 5.30749 5.47103 5.50918 5.58230 5.63444 5.72137 5.89002 5.92601 6.12925 6.41160 6.82251 7.40695 8.91477 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.003801 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.330937 B = 7363.821249 C = 8541.878829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.028 4.028 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.015 4.015 7 C -0.137 4.137 8 C -0.026 4.026 9 C -0.680 4.680 10 S 2.700 3.300 11 O -0.991 6.991 12 O -1.001 7.001 13 N -1.100 6.100 14 C 0.273 3.727 15 H 0.024 0.976 16 C -0.139 4.139 17 C -0.544 4.544 18 H 0.066 0.934 19 C 0.019 3.981 20 N -0.915 5.915 21 Si 0.961 3.039 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.030 4.030 26 C -0.147 4.147 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.417 0.583 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.266 0.734 45 H 0.123 0.877 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.036 8.409 -7.026 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.028 4.028 4 C -0.198 4.198 5 C -0.196 4.196 6 C -0.015 4.015 7 C -0.155 4.155 8 C -0.045 4.045 9 C -0.770 4.770 10 S 2.793 3.207 11 O -0.982 6.982 12 O -0.991 6.991 13 N -0.860 5.860 14 C 0.167 3.833 15 H 0.042 0.958 16 C -0.198 4.198 17 C -0.584 4.584 18 H 0.084 0.916 19 C -0.182 4.182 20 N -0.553 5.553 21 Si 0.786 3.214 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.049 4.049 26 C -0.166 4.166 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.176 0.824 39 H 0.166 0.834 40 H 0.252 0.748 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.141 0.859 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.628 8.072 -7.764 20.885 hybrid contribution 0.703 -0.358 1.190 1.428 sum -16.925 7.713 -6.574 19.727 Atomic orbital electron populations 1.21880 0.94232 1.02115 1.02693 1.21719 0.97317 0.94861 1.02032 1.19691 0.88114 0.97251 0.97777 1.21964 1.02212 1.00186 0.95436 1.21950 1.02211 1.00162 0.95269 1.20504 0.96694 0.92661 0.91653 1.21367 0.93179 0.99229 1.01749 1.21098 0.95641 0.96058 0.91727 1.30580 1.25648 1.00585 1.20154 1.01175 0.74661 0.72214 0.72648 1.93489 1.82676 1.44204 1.77806 1.93513 1.81885 1.45814 1.77931 1.55311 1.71602 1.29191 1.29922 1.18322 0.94056 0.82062 0.88812 0.95788 1.22034 0.96937 1.00929 0.99923 1.21579 1.07091 1.09606 1.20075 0.91628 1.25681 0.98247 0.94899 0.99356 1.70032 1.35140 1.11089 1.39045 0.85529 0.79382 0.77135 0.79338 1.19554 1.21032 1.19561 1.21001 0.95888 0.96219 0.91803 1.21490 0.93047 0.99763 1.02265 0.91499 0.92574 0.91862 0.91689 0.92245 0.91708 0.90055 0.93501 0.92990 0.90077 0.91722 0.82351 0.83361 0.74821 0.93883 0.94175 0.92740 0.92526 0.85858 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.21 71.98 0.66 -1.13 16 2 C -0.12 -1.89 3.65 30.59 0.11 -1.78 16 3 C -0.03 -0.45 0.63 -52.93 -0.03 -0.49 16 4 C -0.14 -2.03 7.93 71.98 0.57 -1.46 16 5 C -0.14 -1.78 7.94 71.98 0.57 -1.21 16 6 C -0.01 -0.33 4.76 -19.87 -0.09 -0.43 16 7 C -0.14 -3.08 8.71 22.27 0.19 -2.89 16 8 C -0.03 -0.72 9.52 22.27 0.21 -0.51 16 9 C -0.68 -23.00 4.94 22.27 0.11 -22.89 16 10 S 2.70 106.90 5.72 -56.49 -0.32 106.58 16 11 O -0.99 -39.73 17.28 -128.00 -2.21 -41.95 16 12 O -1.00 -47.10 16.61 -128.00 -2.13 -49.22 16 13 N -1.10 -45.52 5.46 -172.53 -0.94 -46.47 16 14 C 0.27 13.36 2.77 44.25 0.12 13.49 16 15 H 0.02 1.34 7.48 -2.39 -0.02 1.32 16 16 C -0.14 -6.22 9.29 71.98 0.67 -5.56 16 17 C -0.54 -29.04 8.69 25.60 0.22 -28.82 16 18 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 19 C 0.02 1.00 5.29 84.65 0.45 1.45 16 20 N -0.91 -51.19 11.98 21.45 0.26 -50.93 16 21 Si 0.96 42.50 29.54 68.60 2.03 44.52 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 C -0.03 -0.99 8.72 22.27 0.19 -0.79 16 26 C -0.15 -3.94 8.98 22.27 0.20 -3.74 16 27 H 0.07 0.66 6.43 -2.39 -0.02 0.65 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 30 H 0.06 1.03 7.51 -2.39 -0.02 1.02 16 31 H 0.06 1.04 7.51 -2.39 -0.02 1.03 16 32 H 0.06 0.85 7.39 -2.39 -0.02 0.84 16 33 H 0.08 0.89 6.43 -2.38 -0.02 0.87 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.78 6.43 -2.39 -0.02 0.76 16 37 H 0.06 0.76 7.39 -2.38 -0.02 0.74 16 38 H 0.16 2.51 7.10 -2.91 -0.02 2.48 16 39 H 0.15 3.69 7.62 -2.91 -0.02 3.66 16 40 H 0.42 15.46 8.82 -96.75 -0.85 14.60 16 41 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.58 6.19 -2.38 -0.01 1.56 16 43 H 0.05 2.69 6.84 -2.39 -0.02 2.67 16 44 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.12 4.44 7.61 -2.91 -0.02 4.42 16 46 H 0.15 3.39 5.90 -2.91 -0.02 3.37 16 Total: -1.00 -67.46 370.71 0.97 -66.49 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.13 Total: 27.74 kcal Atomic # 6 Polarization: -60.92 SS G_CDS: 4.16 Total: -56.76 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -0.69 Total: -97.40 kcal Atomic # 8 Polarization: -86.83 SS G_CDS: -4.34 Total: -91.17 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 106.90 SS G_CDS: -0.32 Total: 106.58 kcal Total: -67.46 0.97 -66.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074968089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.384 kcal (2) G-P(sol) polarization free energy of solvation -67.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds