Wall clock time and date at job start Tue Mar 31 2020 14:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46799 * 2 1 4 4 C 1.34510 * 125.78514 * 90.00219 * 3 2 1 5 5 C 1.41388 * 106.84172 * 180.02562 * 4 3 2 6 6 C 1.34518 * 106.83853 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.78983 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.53813 * 20.11045 * 7 6 5 9 9 C 1.53096 * 109.50702 * 259.99735 * 7 6 5 10 10 O 1.43014 * 109.25720 * 183.21613 * 9 7 6 11 11 C 1.43014 * 113.73678 * 58.67430 * 10 9 7 12 12 C 1.53100 * 109.26048 * 301.32483 * 11 10 9 13 13 N 1.47016 * 109.50188 * 140.21604 * 7 6 5 14 14 C 1.46896 * 111.00332 * 302.32267 * 13 7 6 15 15 C 1.53004 * 109.46909 * 170.00193 * 14 13 7 16 16 C 1.53003 * 109.46715 * 180.02562 * 15 14 13 17 17 S 1.81006 * 109.46986 * 180.02562 * 16 15 14 18 18 C 1.76195 * 100.00146 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99957 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99958 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99660 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47614 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47203 * 119.99815 * 22 20 18 25 25 H 1.48501 * 109.47089 * 239.99697 * 22 20 18 26 26 O 1.34300 * 125.78993 * 270.34821 * 3 2 1 27 27 H 1.09000 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47145 * 299.99201 * 1 2 3 29 29 H 1.08995 * 109.47570 * 59.99865 * 1 2 3 30 30 H 1.09002 * 109.46831 * 240.00362 * 2 1 3 31 31 H 1.08998 * 109.47229 * 120.00524 * 2 1 3 32 32 H 1.08004 * 126.58428 * 0.02562 * 4 3 2 33 33 H 1.08002 * 126.58266 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.50680 * 303.15261 * 9 7 6 35 35 H 1.09007 * 109.50443 * 63.23679 * 9 7 6 36 36 H 1.09000 * 109.50924 * 61.26568 * 11 10 9 37 37 H 1.09001 * 109.50777 * 181.34887 * 11 10 9 38 38 H 1.08993 * 109.50999 * 176.78052 * 12 11 10 39 39 H 1.09000 * 109.50792 * 296.92188 * 12 11 10 40 40 H 1.08997 * 109.47795 * 290.00655 * 14 13 7 41 41 H 1.09004 * 109.46972 * 50.01032 * 14 13 7 42 42 H 1.09002 * 109.47439 * 300.00065 * 15 14 13 43 43 H 1.08993 * 109.47075 * 60.00813 * 15 14 13 44 44 H 1.09006 * 109.47334 * 299.99971 * 16 15 14 45 45 H 1.08996 * 109.47557 * 60.00323 * 16 15 14 46 46 H 0.97001 * 120.00262 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1624 1.0912 5 6 2.7396 3.4235 0.6322 6 6 2.7222 3.3772 -0.7121 7 6 3.1171 4.4989 -1.6377 8 1 3.7434 5.2113 -1.1007 9 6 1.8596 5.2071 -2.1485 10 8 2.2363 6.2213 -3.0837 11 6 2.9647 5.7242 -4.2096 12 6 4.2336 5.0213 -3.7198 13 7 3.8639 3.9526 -2.7802 14 6 5.0511 3.2146 -2.3289 15 6 5.6600 2.4566 -3.5102 16 6 6.8962 1.6874 -3.0400 17 16 7.6170 0.7912 -4.4377 18 6 8.9811 0.0176 -3.6344 19 1 9.1489 0.1786 -2.5797 20 6 9.8406 -0.7980 -4.3573 21 7 9.6365 -0.9938 -5.6427 22 14 11.2872 -1.6175 -3.5058 23 1 11.2958 -1.2390 -2.0699 24 1 11.1632 -3.0923 -3.6286 25 1 12.5531 -1.1725 -4.1420 26 8 2.2878 2.1636 -1.0894 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.1858 1.8539 2.1205 33 1 3.0365 4.2628 1.2435 34 1 1.2082 4.4836 -2.6388 35 1 1.3321 5.6620 -1.3100 36 1 2.3455 5.0158 -4.7599 37 1 3.2364 6.5537 -4.8624 38 1 4.7628 4.5912 -4.5701 39 1 4.8776 5.7421 -3.2160 40 1 5.7845 3.9152 -1.9298 41 1 4.7647 2.5062 -1.5515 42 1 4.9265 1.7559 -3.9093 43 1 5.9464 3.1648 -4.2876 44 1 7.6298 2.3878 -2.6406 45 1 6.6095 0.9791 -2.2627 46 1 10.2369 -1.5641 -6.1479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074991157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:27 Heat of formation + Delta-G solvation = -41.848284 kcal Electronic energy + Delta-G solvation = -25512.451745 eV Core-core repulsion = 21915.558115 eV Total energy + Delta-G solvation = -3596.893630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.74749 -39.80093 -36.50025 -34.44113 -33.47556 -32.63582 -32.40616 -31.67983 -28.55651 -27.58021 -25.65445 -24.76472 -24.28214 -23.10544 -21.76381 -21.15780 -20.61808 -19.91239 -17.55271 -17.18909 -16.73362 -16.18913 -15.85001 -15.54542 -15.18703 -15.03811 -14.80528 -14.57777 -14.48257 -14.19248 -13.78970 -13.66010 -13.29090 -12.96361 -12.85359 -12.70580 -12.40990 -12.19375 -11.93477 -11.82617 -11.74052 -11.53957 -11.26896 -11.19669 -11.07200 -10.90930 -10.75216 -10.63083 -10.26252 -10.08874 -9.89339 -9.50608 -9.06219 -8.53419 -8.38684 -8.29090 -6.51950 -6.22482 -3.92382 1.59411 2.47361 2.75154 3.20927 3.21610 3.29788 3.45076 3.60070 3.71621 4.22831 4.35824 4.57172 4.66788 4.79085 4.82774 4.91919 4.93930 5.01104 5.05048 5.06875 5.13679 5.25148 5.29818 5.35084 5.41769 5.47695 5.54610 5.56705 5.60402 5.66076 5.68362 5.71534 5.76524 5.85429 5.87734 5.91234 6.01642 6.09928 6.31711 6.40547 6.57658 6.68825 6.79122 6.89018 6.90641 7.17197 7.61343 8.37429 9.24008 10.85786 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.003123 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.782077 B = 8962.575939 C =10708.394118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C -0.005 4.005 4 C -0.214 4.214 5 C -0.204 4.204 6 C -0.001 4.001 7 C 0.131 3.869 8 H 0.077 0.923 9 C 0.073 3.927 10 O -0.382 6.382 11 C 0.061 3.939 12 C 0.014 3.986 13 N -0.528 5.528 14 C 0.062 3.938 15 C -0.091 4.091 16 C -0.112 4.112 17 S -0.131 6.131 18 C -0.515 4.515 19 H 0.072 0.928 20 C 0.071 3.929 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 O -0.152 6.152 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.711 10.328 10.692 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.056 4.056 4 C -0.233 4.233 5 C -0.224 4.224 6 C -0.052 4.052 7 C 0.022 3.978 8 H 0.095 0.905 9 C -0.004 4.004 10 O -0.301 6.301 11 C -0.016 4.016 12 C -0.114 4.114 13 N -0.254 5.254 14 C -0.067 4.067 15 C -0.130 4.130 16 C -0.261 4.261 17 S 0.097 5.903 18 C -0.664 4.664 19 H 0.090 0.910 20 C -0.138 4.138 21 N -0.505 5.505 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 O -0.047 6.047 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.360 9.958 8.901 23.520 hybrid contribution 2.146 -0.182 2.496 3.297 sum -17.213 9.776 11.397 22.842 Atomic orbital electron populations 1.21776 0.93992 1.02311 1.02483 1.20113 0.96259 0.87564 1.04441 1.22523 1.03644 0.95109 0.84286 1.21487 1.08101 0.94358 0.99333 1.21527 1.07831 0.99518 0.93532 1.21878 1.04161 0.85795 0.93404 1.20822 0.96683 0.90280 0.90055 0.90540 1.22680 0.94079 0.90720 0.92952 1.87993 1.74526 1.33431 1.34122 1.22757 0.91851 0.98867 0.88123 1.22914 0.97723 0.92934 0.97808 1.62269 1.24166 1.24850 1.14073 1.22234 0.89425 0.96596 0.98458 1.21253 0.96318 0.98812 0.96578 1.23218 0.98663 1.01168 1.03043 1.84609 1.33837 1.59155 1.12662 1.22734 1.12545 1.33554 0.97543 0.90973 1.25007 0.97916 0.95913 0.94939 1.70028 1.37332 1.36544 1.06625 0.86124 0.81076 0.78966 0.79426 1.19627 1.20541 1.20568 1.84071 1.64331 1.21859 1.34431 0.91622 0.92357 0.92251 0.89668 0.88904 0.83673 0.83682 0.91721 0.88158 0.91883 0.88104 0.88249 0.93680 0.94710 0.90660 0.90708 0.91634 0.92394 0.92228 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.05 -0.42 6.47 -27.88 -0.18 -0.60 16 3 C 0.00 -0.06 6.57 -35.63 -0.23 -0.29 16 4 C -0.21 -2.34 10.81 -39.70 -0.43 -2.77 16 5 C -0.20 -2.29 10.80 -39.70 -0.43 -2.72 16 6 C 0.00 -0.02 4.48 -35.62 -0.16 -0.18 16 7 C 0.13 1.50 2.44 -68.75 -0.17 1.34 16 8 H 0.08 0.85 8.13 -51.93 -0.42 0.42 16 9 C 0.07 0.76 6.27 37.21 0.23 0.99 16 10 O -0.38 -4.30 10.83 -35.23 -0.38 -4.69 16 11 C 0.06 0.61 7.01 37.21 0.26 0.87 16 12 C 0.01 0.16 5.44 -3.70 -0.02 0.14 16 13 N -0.53 -6.83 4.52 -227.72 -1.03 -7.86 16 14 C 0.06 0.90 4.78 -3.82 -0.02 0.88 16 15 C -0.09 -1.55 5.15 -26.73 -0.14 -1.68 16 16 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 17 S -0.13 -3.47 21.44 -107.50 -2.30 -5.78 16 18 C -0.52 -14.97 9.50 30.94 0.29 -14.68 16 19 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 22 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 O -0.15 -2.08 10.40 5.69 0.06 -2.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.14 6.38 -51.93 -0.33 0.81 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 41 H 0.08 1.18 6.50 -51.93 -0.34 0.84 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.07 1.09 6.52 -51.93 -0.34 0.75 16 44 H 0.06 1.19 8.14 -51.91 -0.42 0.77 16 45 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -32.56 385.80 -10.38 -42.94 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.74 Total: -0.06 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -0.51 Total: -19.62 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: -0.30 Total: -33.27 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.32 Total: -6.71 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.30 Total: -5.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.56 -10.38 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.091 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds