Wall clock time and date at job start Tue Mar 31 2020 14:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46799 * 2 1 4 4 C 1.34510 * 125.78514 * 90.00219 * 3 2 1 5 5 C 1.41388 * 106.84172 * 180.02562 * 4 3 2 6 6 C 1.34518 * 106.83853 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.78983 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.53813 * 20.11045 * 7 6 5 9 9 C 1.53096 * 109.50702 * 259.99735 * 7 6 5 10 10 O 1.43014 * 109.25720 * 183.21613 * 9 7 6 11 11 C 1.43014 * 113.73678 * 58.67430 * 10 9 7 12 12 C 1.53100 * 109.26048 * 301.32483 * 11 10 9 13 13 N 1.47016 * 109.50188 * 140.21604 * 7 6 5 14 14 C 1.46896 * 111.00332 * 302.32267 * 13 7 6 15 15 C 1.53004 * 109.46909 * 170.00193 * 14 13 7 16 16 C 1.53003 * 109.46715 * 180.02562 * 15 14 13 17 17 S 1.81006 * 109.46986 * 180.02562 * 16 15 14 18 18 C 1.76195 * 100.00146 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99957 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99958 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99660 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47614 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47203 * 119.99815 * 22 20 18 25 25 H 1.48501 * 109.47089 * 239.99697 * 22 20 18 26 26 O 1.34300 * 125.78993 * 270.34821 * 3 2 1 27 27 H 1.09000 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47145 * 299.99201 * 1 2 3 29 29 H 1.08995 * 109.47570 * 59.99865 * 1 2 3 30 30 H 1.09002 * 109.46831 * 240.00362 * 2 1 3 31 31 H 1.08998 * 109.47229 * 120.00524 * 2 1 3 32 32 H 1.08004 * 126.58428 * 0.02562 * 4 3 2 33 33 H 1.08002 * 126.58266 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.50680 * 303.15261 * 9 7 6 35 35 H 1.09007 * 109.50443 * 63.23679 * 9 7 6 36 36 H 1.09000 * 109.50924 * 61.26568 * 11 10 9 37 37 H 1.09001 * 109.50777 * 181.34887 * 11 10 9 38 38 H 1.08993 * 109.50999 * 176.78052 * 12 11 10 39 39 H 1.09000 * 109.50792 * 296.92188 * 12 11 10 40 40 H 1.08997 * 109.47795 * 290.00655 * 14 13 7 41 41 H 1.09004 * 109.46972 * 50.01032 * 14 13 7 42 42 H 1.09002 * 109.47439 * 300.00065 * 15 14 13 43 43 H 1.08993 * 109.47075 * 60.00813 * 15 14 13 44 44 H 1.09006 * 109.47334 * 299.99971 * 16 15 14 45 45 H 1.08996 * 109.47557 * 60.00323 * 16 15 14 46 46 H 0.97001 * 120.00262 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1624 1.0912 5 6 2.7396 3.4235 0.6322 6 6 2.7222 3.3772 -0.7121 7 6 3.1171 4.4989 -1.6377 8 1 3.7434 5.2113 -1.1007 9 6 1.8596 5.2071 -2.1485 10 8 2.2363 6.2213 -3.0837 11 6 2.9647 5.7242 -4.2096 12 6 4.2336 5.0213 -3.7198 13 7 3.8639 3.9526 -2.7802 14 6 5.0511 3.2146 -2.3289 15 6 5.6600 2.4566 -3.5102 16 6 6.8962 1.6874 -3.0400 17 16 7.6170 0.7912 -4.4377 18 6 8.9811 0.0176 -3.6344 19 1 9.1489 0.1786 -2.5797 20 6 9.8406 -0.7980 -4.3573 21 7 9.6365 -0.9938 -5.6427 22 14 11.2872 -1.6175 -3.5058 23 1 11.2958 -1.2390 -2.0699 24 1 11.1632 -3.0923 -3.6286 25 1 12.5531 -1.1725 -4.1420 26 8 2.2878 2.1636 -1.0894 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.1858 1.8539 2.1205 33 1 3.0365 4.2628 1.2435 34 1 1.2082 4.4836 -2.6388 35 1 1.3321 5.6620 -1.3100 36 1 2.3455 5.0158 -4.7599 37 1 3.2364 6.5537 -4.8624 38 1 4.7628 4.5912 -4.5701 39 1 4.8776 5.7421 -3.2160 40 1 5.7845 3.9152 -1.9298 41 1 4.7647 2.5062 -1.5515 42 1 4.9265 1.7559 -3.9093 43 1 5.9464 3.1648 -4.2876 44 1 7.6298 2.3878 -2.6406 45 1 6.6095 0.9791 -2.2627 46 1 10.2369 -1.5641 -6.1479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074991157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:26 Heat of formation + Delta-G solvation = -61.331980 kcal Electronic energy + Delta-G solvation = -25513.296621 eV Core-core repulsion = 21915.558115 eV Total energy + Delta-G solvation = -3597.738506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.62977 -40.71030 -37.53475 -35.22551 -34.65152 -34.48781 -33.72031 -32.54181 -29.54327 -28.54618 -27.78990 -25.69537 -25.46562 -23.88466 -22.63992 -22.40738 -21.61202 -20.79609 -19.59001 -18.19604 -17.65548 -17.07712 -16.91721 -16.72269 -16.62152 -16.23213 -16.07281 -15.95913 -15.49430 -15.14661 -15.03526 -14.73306 -14.58815 -13.99769 -13.72308 -13.68273 -13.55162 -13.33859 -13.24923 -13.06802 -12.96753 -12.84404 -12.55387 -12.50405 -12.38306 -12.27387 -11.93028 -11.77963 -11.63326 -11.38762 -11.17105 -10.93911 -10.72946 -10.35274 -9.52974 -9.24429 -8.69089 -8.39318 -6.15862 0.71470 1.29831 1.36997 1.47705 1.63137 1.69948 1.92756 2.25592 2.60184 2.80642 2.94955 3.29371 3.52915 3.69631 3.84718 3.88630 3.90906 4.00386 4.12846 4.15629 4.21115 4.25364 4.26403 4.36031 4.38128 4.40569 4.56371 4.58392 4.66425 4.67806 4.71370 4.82784 4.87122 4.90375 4.93997 5.00628 5.09272 5.11144 5.14589 5.22020 5.32313 5.37831 5.59939 5.77802 5.84955 6.05401 6.16316 6.29582 7.02926 8.70403 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.003123 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.782077 B = 8962.575939 C =10708.394118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C -0.021 4.021 4 C -0.218 4.218 5 C -0.204 4.204 6 C -0.019 4.019 7 C 0.133 3.867 8 H 0.085 0.915 9 C 0.077 3.923 10 O -0.390 6.390 11 C 0.063 3.937 12 C 0.013 3.987 13 N -0.539 5.539 14 C 0.077 3.923 15 C -0.077 4.077 16 C -0.087 4.087 17 S -0.190 6.190 18 C -0.540 4.540 19 H 0.071 0.929 20 C 0.017 3.983 21 N -0.906 5.906 22 Si 0.994 3.006 23 H -0.264 1.264 24 H -0.270 1.270 25 H -0.270 1.270 26 O -0.178 6.178 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.055 0.945 35 H 0.120 0.880 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.771 10.922 12.401 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.071 4.071 4 C -0.237 4.237 5 C -0.224 4.224 6 C -0.070 4.070 7 C 0.025 3.975 8 H 0.102 0.898 9 C 0.000 4.000 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.114 4.114 13 N -0.264 5.264 14 C -0.052 4.052 15 C -0.116 4.116 16 C -0.236 4.236 17 S 0.039 5.961 18 C -0.688 4.688 19 H 0.089 0.911 20 C -0.188 4.188 21 N -0.543 5.543 22 Si 0.816 3.184 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.195 1.195 26 O -0.074 6.074 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.184 0.816 33 H 0.183 0.817 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.435 10.566 10.609 24.534 hybrid contribution 2.085 -0.334 1.975 2.891 sum -17.351 10.231 12.585 23.751 Atomic orbital electron populations 1.21742 0.92821 1.03262 1.02186 1.20256 0.97256 0.86284 1.04742 1.23094 1.03764 0.96061 0.84186 1.21813 1.07577 0.94183 1.00162 1.21847 1.07003 1.00202 0.93336 1.22098 1.05060 0.85760 0.94070 1.20877 0.96907 0.90232 0.89496 0.89778 1.22715 0.93489 0.90475 0.93348 1.87987 1.74583 1.33812 1.34469 1.22844 0.90989 0.99560 0.88005 1.22971 0.98570 0.92590 0.97314 1.62197 1.23333 1.25867 1.15051 1.21934 0.90204 0.96446 0.96639 1.21107 0.94345 0.98412 0.97750 1.23118 0.99707 1.00541 1.00238 1.84600 1.34313 1.60454 1.16769 1.23061 1.13553 1.34438 0.97702 0.91127 1.26058 1.00908 0.96253 0.95625 1.70152 1.38671 1.37211 1.08246 0.84969 0.77022 0.77948 0.78441 1.18779 1.19552 1.19518 1.84046 1.65002 1.22673 1.35695 0.90039 0.91666 0.93484 0.90771 0.87141 0.81592 0.81742 0.92638 0.86222 0.92171 0.85835 0.88693 0.93219 0.94046 0.91781 0.91965 0.91064 0.91978 0.92607 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.05 -0.84 6.47 29.85 0.19 -0.65 16 3 C -0.02 -0.47 6.57 24.83 0.16 -0.31 16 4 C -0.22 -4.48 10.81 22.19 0.24 -4.24 16 5 C -0.20 -4.28 10.80 22.19 0.24 -4.04 16 6 C -0.02 -0.47 4.48 24.83 0.11 -0.35 16 7 C 0.13 2.92 2.44 44.18 0.11 3.03 16 8 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 9 C 0.08 1.50 6.27 72.01 0.45 1.95 16 10 O -0.39 -8.13 10.83 -148.98 -1.61 -9.74 16 11 C 0.06 1.16 7.01 72.02 0.50 1.67 16 12 C 0.01 0.28 5.44 86.31 0.47 0.75 16 13 N -0.54 -13.55 4.52 -874.37 -3.96 -17.51 16 14 C 0.08 2.20 4.78 86.31 0.41 2.62 16 15 C -0.08 -2.63 5.15 30.60 0.16 -2.48 16 16 C -0.09 -3.63 5.67 71.98 0.41 -3.22 16 17 S -0.19 -10.31 21.44 -56.49 -1.21 -11.53 16 18 C -0.54 -31.71 9.50 67.95 0.65 -31.06 16 19 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 20 C 0.02 0.95 5.49 84.86 0.47 1.42 16 21 N -0.91 -55.06 13.22 21.65 0.29 -54.78 16 22 Si 0.99 44.28 29.55 68.60 2.03 46.31 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 O -0.18 -4.89 10.40 -2.55 -0.03 -4.91 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 2.11 6.38 -2.39 -0.02 2.09 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.04 1.13 8.12 -2.39 -0.02 1.11 16 41 H 0.06 1.99 6.50 -2.39 -0.02 1.98 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.07 2.35 6.52 -2.39 -0.02 2.33 16 44 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.06 2.36 8.14 -2.40 -0.02 2.34 16 46 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -70.28 385.80 1.73 -68.55 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.94 Total: 19.82 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 5.28 Total: -36.20 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -3.67 Total: -72.29 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -1.64 Total: -14.66 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -10.31 SS G_CDS: -1.21 Total: -11.53 kcal Total: -70.28 1.73 -68.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.215 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds