Wall clock time and date at job start Tue Mar 31 2020 14:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47486 * 2 1 4 4 C 1.34511 * 125.78733 * 89.99611 * 3 2 1 5 5 C 1.41387 * 106.84097 * 179.97438 * 4 3 2 6 6 C 1.34509 * 106.83977 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.79209 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.54080 * 339.89110 * 7 6 5 9 9 C 1.53103 * 109.50537 * 99.99707 * 7 6 5 10 10 O 1.43012 * 109.29295 * 176.80961 * 9 7 6 11 11 C 1.43020 * 113.73782 * 301.30495 * 10 9 7 12 12 C 1.53106 * 109.25547 * 58.67416 * 11 10 9 13 13 N 1.47011 * 109.25649 * 303.14937 * 12 11 10 14 14 C 1.46897 * 110.99678 * 182.39154 * 13 12 11 15 15 C 1.53002 * 109.47217 * 66.05066 * 14 13 12 16 16 C 1.52998 * 109.47185 * 180.02562 * 15 14 13 17 17 S 1.80999 * 109.47035 * 179.97438 * 16 15 14 18 18 C 1.76199 * 100.00093 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99992 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00242 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99982 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99781 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47239 * 90.00345 * 22 20 18 24 24 H 1.48499 * 109.47091 * 210.00170 * 22 20 18 25 25 H 1.48501 * 109.47151 * 330.00620 * 22 20 18 26 26 O 1.34302 * 125.79328 * 270.27784 * 3 2 1 27 27 H 1.08995 * 109.47406 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46717 * 299.99542 * 1 2 3 29 29 H 1.08995 * 109.47473 * 59.99313 * 1 2 3 30 30 H 1.09002 * 109.47131 * 240.00125 * 2 1 3 31 31 H 1.09004 * 109.47679 * 120.00097 * 2 1 3 32 32 H 1.08003 * 126.58360 * 359.95732 * 4 3 2 33 33 H 1.08004 * 126.57772 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.50635 * 56.85119 * 9 7 6 35 35 H 1.09003 * 109.50698 * 296.76731 * 9 7 6 36 36 H 1.09004 * 109.50689 * 178.60561 * 11 10 9 37 37 H 1.08993 * 109.50951 * 298.74116 * 11 10 9 38 38 H 1.08998 * 109.50564 * 63.08176 * 12 11 10 39 39 H 1.08996 * 109.50436 * 183.21424 * 12 11 10 40 40 H 1.09006 * 109.46835 * 186.04386 * 14 13 12 41 41 H 1.08996 * 109.47546 * 306.04459 * 14 13 12 42 42 H 1.09006 * 109.46664 * 299.99426 * 15 14 13 43 43 H 1.08996 * 109.47358 * 59.99278 * 15 14 13 44 44 H 1.09006 * 109.46763 * 299.99258 * 16 15 14 45 45 H 1.08996 * 109.47649 * 59.99349 * 16 15 14 46 46 H 0.97003 * 119.99469 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1624 1.0911 5 6 2.7410 3.4230 0.6321 6 6 2.7244 3.3764 -0.7121 7 6 3.1208 4.4975 -1.6378 8 1 3.0814 5.4451 -1.1005 9 6 4.5438 4.2589 -2.1497 10 8 4.8880 5.2848 -3.0847 11 6 4.0089 5.3562 -4.2105 12 6 2.5801 5.6065 -3.7204 13 7 2.1964 4.5426 -2.7812 14 6 0.8091 4.7143 -2.3297 15 6 -0.1406 4.5154 -3.5126 16 6 -1.5855 4.6949 -3.0425 17 16 -2.7089 4.4603 -4.4421 18 6 -4.2562 4.7153 -3.6386 19 1 -4.2857 4.9400 -2.5826 20 6 -5.4371 4.6263 -4.3625 21 7 -6.5929 4.8173 -3.7623 22 14 -5.3860 4.2369 -6.1888 23 1 -5.4470 2.7660 -6.3832 24 1 -6.5456 4.8739 -6.8633 25 1 -4.1249 4.7614 -6.7716 26 8 2.2893 2.1631 -1.0894 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1848 1.8543 2.1205 33 1 3.0383 4.2622 1.2435 34 1 4.5959 3.2869 -2.6402 35 1 5.2406 4.2814 -1.3117 36 1 4.3183 6.1729 -4.8627 37 1 4.0453 4.4162 -4.7610 38 1 2.5321 6.5717 -3.2164 39 1 1.8982 5.6048 -4.5707 40 1 0.5851 3.9794 -1.5564 41 1 0.6802 5.7182 -1.9251 42 1 0.0834 5.2503 -4.2859 43 1 -0.0118 3.5116 -3.9172 44 1 -1.8097 3.9602 -2.2690 45 1 -1.7140 5.6989 -2.6381 46 1 -7.4182 4.7555 -4.2684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074991158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:30 Heat of formation + Delta-G solvation = -41.437018 kcal Electronic energy + Delta-G solvation = -25683.377285 eV Core-core repulsion = 22086.501489 eV Total energy + Delta-G solvation = -3596.875796 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.77102 -39.84474 -36.56151 -34.42953 -33.52372 -32.68775 -32.43755 -31.71745 -28.59273 -27.62405 -25.74027 -24.76337 -24.41334 -23.11838 -21.78566 -21.23724 -20.68468 -19.93569 -17.57563 -17.18563 -16.79486 -16.25371 -15.83796 -15.58697 -15.29052 -15.01912 -15.00218 -14.63624 -14.46907 -14.22420 -13.82438 -13.70587 -13.24193 -12.87829 -12.85545 -12.63025 -12.53476 -12.30720 -12.18672 -11.90625 -11.70265 -11.59129 -11.42723 -11.19173 -11.08798 -11.02073 -10.91059 -10.38705 -10.24578 -10.06292 -9.90345 -9.74880 -9.00803 -8.59751 -8.56367 -8.40620 -6.94422 -6.28640 -4.00810 1.57000 2.45509 2.72459 2.99012 3.29770 3.43519 3.45540 3.56301 3.66915 4.31278 4.34049 4.53036 4.65550 4.75425 4.78282 4.81551 4.91651 4.92095 5.00555 5.03568 5.07452 5.10236 5.22998 5.28121 5.35629 5.43590 5.45438 5.54321 5.59486 5.61344 5.65326 5.68237 5.73356 5.79685 5.87284 5.93542 5.99488 6.10225 6.19497 6.38203 6.45181 6.58636 6.72359 6.81306 6.85344 7.14432 7.95198 8.44143 9.17309 10.80938 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.003408 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.671925 B = 8215.114289 C =10029.038847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.005 4.005 4 C -0.213 4.213 5 C -0.203 4.203 6 C -0.003 4.003 7 C 0.131 3.869 8 H 0.078 0.922 9 C 0.073 3.927 10 O -0.382 6.382 11 C 0.061 3.939 12 C 0.014 3.986 13 N -0.528 5.528 14 C 0.061 3.939 15 C -0.094 4.094 16 C -0.081 4.081 17 S -0.213 6.213 18 C -0.502 4.502 19 H 0.087 0.913 20 C 0.092 3.908 21 N -0.882 5.882 22 Si 0.862 3.138 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.238 1.238 26 O -0.152 6.152 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.435 -4.501 6.603 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.056 4.056 4 C -0.233 4.233 5 C -0.223 4.223 6 C -0.054 4.054 7 C 0.022 3.978 8 H 0.095 0.905 9 C -0.004 4.004 10 O -0.300 6.300 11 C -0.016 4.016 12 C -0.114 4.114 13 N -0.254 5.254 14 C -0.067 4.067 15 C -0.133 4.133 16 C -0.230 4.230 17 S 0.015 5.985 18 C -0.650 4.650 19 H 0.105 0.895 20 C -0.116 4.116 21 N -0.519 5.519 22 Si 0.686 3.314 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.162 1.162 26 O -0.048 6.048 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.596 -5.144 4.964 24.655 hybrid contribution -1.021 0.863 1.299 1.864 sum 22.575 -4.281 6.263 23.816 Atomic orbital electron populations 1.21805 0.93494 1.02511 1.03182 1.20101 0.96707 0.87353 1.03852 1.22555 1.03462 0.95283 0.84281 1.21494 1.08011 0.94383 0.99369 1.21532 1.07674 0.99536 0.93526 1.21857 1.04298 0.85853 0.93403 1.20832 0.94160 0.92811 0.89987 0.90477 1.22685 0.92959 0.91831 0.92966 1.88000 1.52616 1.55305 1.34116 1.22755 0.88127 1.02543 0.88163 1.22914 0.97892 0.92832 0.97759 1.62279 1.02502 1.46429 1.14157 1.22209 0.86157 1.00120 0.98258 1.21311 0.91966 1.03207 0.96835 1.22995 0.95813 1.03373 1.00832 1.84131 1.03685 1.93960 1.16761 1.22128 0.88757 1.55420 0.98680 0.89478 1.24790 0.94323 0.93565 0.98925 1.69941 0.97462 1.47690 1.36819 0.86673 0.79889 0.79780 0.85011 1.19350 1.20106 1.16187 1.84064 1.64347 1.21890 1.34453 0.91570 0.92187 0.91705 0.90076 0.89082 0.83638 0.83654 0.91716 0.88103 0.88114 0.91912 0.93617 0.88347 0.90500 0.94545 0.91537 0.90608 0.91520 0.91625 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.04 -0.38 6.47 -27.88 -0.18 -0.56 16 3 C 0.00 -0.06 6.58 -35.63 -0.23 -0.29 16 4 C -0.21 -2.30 10.81 -39.70 -0.43 -2.73 16 5 C -0.20 -2.23 10.80 -39.70 -0.43 -2.66 16 6 C 0.00 -0.04 4.51 -35.63 -0.16 -0.20 16 7 C 0.13 1.45 2.45 -68.70 -0.17 1.28 16 8 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 9 C 0.07 0.73 6.27 37.21 0.23 0.96 16 10 O -0.38 -4.15 10.83 -35.23 -0.38 -4.53 16 11 C 0.06 0.58 7.01 37.21 0.26 0.84 16 12 C 0.01 0.15 5.43 -3.71 -0.02 0.13 16 13 N -0.53 -6.50 4.53 -227.65 -1.03 -7.53 16 14 C 0.06 0.85 4.78 -3.82 -0.02 0.83 16 15 C -0.09 -1.50 5.15 -26.73 -0.14 -1.64 16 16 C -0.08 -1.61 5.67 37.16 0.21 -1.40 16 17 S -0.21 -5.24 19.41 -107.50 -2.09 -7.33 16 18 C -0.50 -14.70 10.04 30.94 0.31 -14.39 16 19 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 20 C 0.09 2.71 5.50 -17.43 -0.10 2.61 16 21 N -0.88 -26.91 13.97 55.49 0.78 -26.13 16 22 Si 0.86 21.64 27.74 -169.99 -4.71 16.93 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 26 O -0.15 -2.03 10.37 5.71 0.06 -1.97 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 1.05 6.37 -51.93 -0.33 0.72 16 40 H 0.08 1.16 6.49 -51.93 -0.34 0.82 16 41 H 0.04 0.50 8.12 -51.93 -0.42 0.07 16 42 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 1.35 8.14 -51.91 -0.42 0.92 16 45 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 46 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -32.32 383.07 -9.86 -42.19 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.77 Total: 0.88 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -0.49 Total: -18.28 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: -0.26 Total: -33.66 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.32 Total: -6.50 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.09 Total: -7.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.32 -9.86 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.748 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds