Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47486 * 2 1 4 4 C 1.34511 * 125.78733 * 89.99611 * 3 2 1 5 5 C 1.41387 * 106.84097 * 179.97438 * 4 3 2 6 6 C 1.34509 * 106.83977 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.79209 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.54080 * 339.89110 * 7 6 5 9 9 C 1.53103 * 109.50537 * 99.99707 * 7 6 5 10 10 O 1.43012 * 109.29295 * 176.80961 * 9 7 6 11 11 C 1.43020 * 113.73782 * 301.30495 * 10 9 7 12 12 C 1.53106 * 109.25547 * 58.67416 * 11 10 9 13 13 N 1.47011 * 109.25649 * 303.14937 * 12 11 10 14 14 C 1.46897 * 110.99678 * 182.39154 * 13 12 11 15 15 C 1.53002 * 109.47217 * 66.05066 * 14 13 12 16 16 C 1.52998 * 109.47185 * 180.02562 * 15 14 13 17 17 S 1.80999 * 109.47035 * 179.97438 * 16 15 14 18 18 C 1.76199 * 100.00093 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99992 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00242 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99982 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99781 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47239 * 90.00345 * 22 20 18 24 24 H 1.48499 * 109.47091 * 210.00170 * 22 20 18 25 25 H 1.48501 * 109.47151 * 330.00620 * 22 20 18 26 26 O 1.34302 * 125.79328 * 270.27784 * 3 2 1 27 27 H 1.08995 * 109.47406 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46717 * 299.99542 * 1 2 3 29 29 H 1.08995 * 109.47473 * 59.99313 * 1 2 3 30 30 H 1.09002 * 109.47131 * 240.00125 * 2 1 3 31 31 H 1.09004 * 109.47679 * 120.00097 * 2 1 3 32 32 H 1.08003 * 126.58360 * 359.95732 * 4 3 2 33 33 H 1.08004 * 126.57772 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.50635 * 56.85119 * 9 7 6 35 35 H 1.09003 * 109.50698 * 296.76731 * 9 7 6 36 36 H 1.09004 * 109.50689 * 178.60561 * 11 10 9 37 37 H 1.08993 * 109.50951 * 298.74116 * 11 10 9 38 38 H 1.08998 * 109.50564 * 63.08176 * 12 11 10 39 39 H 1.08996 * 109.50436 * 183.21424 * 12 11 10 40 40 H 1.09006 * 109.46835 * 186.04386 * 14 13 12 41 41 H 1.08996 * 109.47546 * 306.04459 * 14 13 12 42 42 H 1.09006 * 109.46664 * 299.99426 * 15 14 13 43 43 H 1.08996 * 109.47358 * 59.99278 * 15 14 13 44 44 H 1.09006 * 109.46763 * 299.99258 * 16 15 14 45 45 H 1.08996 * 109.47649 * 59.99349 * 16 15 14 46 46 H 0.97003 * 119.99469 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1624 1.0911 5 6 2.7410 3.4230 0.6321 6 6 2.7244 3.3764 -0.7121 7 6 3.1208 4.4975 -1.6378 8 1 3.0814 5.4451 -1.1005 9 6 4.5438 4.2589 -2.1497 10 8 4.8880 5.2848 -3.0847 11 6 4.0089 5.3562 -4.2105 12 6 2.5801 5.6065 -3.7204 13 7 2.1964 4.5426 -2.7812 14 6 0.8091 4.7143 -2.3297 15 6 -0.1406 4.5154 -3.5126 16 6 -1.5855 4.6949 -3.0425 17 16 -2.7089 4.4603 -4.4421 18 6 -4.2562 4.7153 -3.6386 19 1 -4.2857 4.9400 -2.5826 20 6 -5.4371 4.6263 -4.3625 21 7 -6.5929 4.8173 -3.7623 22 14 -5.3860 4.2369 -6.1888 23 1 -5.4470 2.7660 -6.3832 24 1 -6.5456 4.8739 -6.8633 25 1 -4.1249 4.7614 -6.7716 26 8 2.2893 2.1631 -1.0894 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1848 1.8543 2.1205 33 1 3.0383 4.2622 1.2435 34 1 4.5959 3.2869 -2.6402 35 1 5.2406 4.2814 -1.3117 36 1 4.3183 6.1729 -4.8627 37 1 4.0453 4.4162 -4.7610 38 1 2.5321 6.5717 -3.2164 39 1 1.8982 5.6048 -4.5707 40 1 0.5851 3.9794 -1.5564 41 1 0.6802 5.7182 -1.9251 42 1 0.0834 5.2503 -4.2859 43 1 -0.0118 3.5116 -3.9172 44 1 -1.8097 3.9602 -2.2690 45 1 -1.7140 5.6989 -2.6381 46 1 -7.4182 4.7555 -4.2684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074991158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = -61.257437 kcal Electronic energy + Delta-G solvation = -25684.236763 eV Core-core repulsion = 22086.501489 eV Total energy + Delta-G solvation = -3597.735274 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.63001 -40.70539 -37.54348 -35.23886 -34.71129 -34.52540 -33.74385 -32.54565 -29.55407 -28.56921 -27.95678 -25.74263 -25.47739 -23.90025 -22.64664 -22.43121 -21.61915 -20.79116 -19.65070 -18.17035 -17.68105 -17.14905 -17.07662 -16.69087 -16.65197 -16.19480 -16.10694 -15.91227 -15.50096 -15.15644 -15.05220 -14.82991 -14.68321 -14.01109 -13.84873 -13.73169 -13.66431 -13.47697 -13.27984 -13.12673 -13.03399 -12.91576 -12.60265 -12.44849 -12.38569 -12.10565 -11.93465 -11.78664 -11.76626 -11.48885 -11.18172 -10.94271 -10.73872 -10.59533 -9.53959 -9.24723 -9.01980 -8.53846 -6.25697 0.71029 1.09656 1.31093 1.46202 1.62640 1.69604 1.92475 2.23309 2.57572 2.67563 2.81412 2.84309 3.52605 3.69372 3.83675 3.87793 3.89850 4.00695 4.11443 4.14343 4.16969 4.24234 4.25540 4.34683 4.35396 4.39416 4.54698 4.56953 4.66019 4.68130 4.68953 4.82311 4.86862 4.89055 4.94051 4.97753 5.06680 5.09772 5.14716 5.18954 5.32213 5.59181 5.67525 5.76277 5.84582 6.06177 6.07660 6.29036 6.89979 8.59497 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.003408 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.671925 B = 8215.114289 C =10029.038847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.041 4.041 3 C -0.021 4.021 4 C -0.219 4.219 5 C -0.206 4.206 6 C -0.019 4.019 7 C 0.133 3.867 8 H 0.083 0.917 9 C 0.077 3.923 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.012 3.988 13 N -0.537 5.537 14 C 0.075 3.925 15 C -0.080 4.080 16 C -0.069 4.069 17 S -0.211 6.211 18 C -0.525 4.525 19 H 0.048 0.952 20 C 0.040 3.960 21 N -0.922 5.922 22 Si 0.926 3.074 23 H -0.261 1.261 24 H -0.261 1.261 25 H -0.228 1.228 26 O -0.176 6.176 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.331 -4.691 5.933 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 C -0.071 4.071 4 C -0.238 4.238 5 C -0.225 4.225 6 C -0.069 4.069 7 C 0.025 3.975 8 H 0.101 0.899 9 C 0.000 4.000 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.115 4.115 13 N -0.262 5.262 14 C -0.055 4.055 15 C -0.119 4.119 16 C -0.218 4.218 17 S 0.017 5.983 18 C -0.673 4.673 19 H 0.066 0.934 20 C -0.165 4.165 21 N -0.560 5.560 22 Si 0.746 3.254 23 H -0.186 1.186 24 H -0.186 1.186 25 H -0.151 1.151 26 O -0.073 6.073 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.183 0.817 33 H 0.181 0.819 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.504 -5.330 4.304 26.408 hybrid contribution -1.573 0.926 1.643 2.456 sum 23.931 -4.404 5.947 25.049 Atomic orbital electron populations 1.21785 0.94250 1.03150 1.01614 1.20219 0.95904 0.86312 1.05312 1.23110 1.03579 0.96264 0.84152 1.21822 1.07535 0.94259 1.00211 1.21846 1.07047 1.00202 0.93445 1.22086 1.04995 0.85821 0.94020 1.20887 0.94304 0.92818 0.89511 0.89905 1.22709 0.92643 0.91294 0.93348 1.87993 1.52975 1.55459 1.34518 1.22857 0.87167 1.03428 0.87989 1.22987 0.98735 0.92424 0.97345 1.62222 1.01707 1.47322 1.14991 1.21935 0.86982 0.99847 0.96695 1.21167 0.89668 1.03136 0.97899 1.23028 0.96956 1.03026 0.98746 1.83783 1.01856 1.94002 1.18662 1.22341 0.91796 1.55612 0.97533 0.93390 1.25776 0.93765 0.93085 1.03893 1.70040 0.98410 1.48547 1.39032 0.85716 0.80741 0.79978 0.78927 1.18586 1.18577 1.15127 1.84039 1.64960 1.22630 1.35626 0.89839 0.92454 0.94486 0.89773 0.86414 0.81692 0.81869 0.92479 0.86340 0.85877 0.92030 0.93331 0.88340 0.91891 0.94130 0.90398 0.91256 0.92386 0.91676 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.89 71.98 0.71 -2.10 16 2 C -0.04 -0.67 6.47 29.85 0.19 -0.48 16 3 C -0.02 -0.46 6.58 24.83 0.16 -0.30 16 4 C -0.22 -4.45 10.81 22.19 0.24 -4.21 16 5 C -0.21 -4.26 10.80 22.19 0.24 -4.02 16 6 C -0.02 -0.43 4.51 24.83 0.11 -0.32 16 7 C 0.13 2.79 2.45 44.16 0.11 2.90 16 8 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 9 C 0.08 1.43 6.27 72.02 0.45 1.88 16 10 O -0.39 -7.71 10.83 -148.98 -1.61 -9.32 16 11 C 0.06 1.05 7.01 72.02 0.50 1.56 16 12 C 0.01 0.24 5.43 86.32 0.47 0.71 16 13 N -0.54 -12.59 4.53 -874.16 -3.96 -16.54 16 14 C 0.07 2.02 4.78 86.30 0.41 2.43 16 15 C -0.08 -2.47 5.15 30.59 0.16 -2.31 16 16 C -0.07 -2.72 5.67 71.98 0.41 -2.31 16 17 S -0.21 -10.31 19.41 -56.49 -1.10 -11.41 16 18 C -0.53 -31.48 10.04 67.96 0.68 -30.79 16 19 H 0.05 3.14 8.03 -2.91 -0.02 3.12 16 20 C 0.04 2.35 5.50 84.86 0.47 2.81 16 21 N -0.92 -57.24 13.97 21.65 0.30 -56.94 16 22 Si 0.93 44.30 27.74 68.60 1.90 46.21 16 23 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.23 -10.47 6.74 99.48 0.67 -9.80 16 26 O -0.18 -4.66 10.37 -2.47 -0.03 -4.69 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 1.91 6.37 -2.39 -0.02 1.90 16 40 H 0.06 1.89 6.49 -2.38 -0.02 1.88 16 41 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 42 H 0.08 2.26 6.51 -2.38 -0.02 2.24 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.06 2.59 8.14 -2.40 -0.02 2.57 16 46 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -70.16 383.07 1.74 -68.42 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.91 Total: 18.83 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 5.32 Total: -34.56 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -3.65 Total: -73.48 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.64 Total: -14.01 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.21 kcal Atomic # 16 Polarization: -10.31 SS G_CDS: -1.10 Total: -11.41 kcal Total: -70.16 1.74 -68.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.168 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds