Wall clock time and date at job start Tue Mar 31 2020 14:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.50699 * 109.46968 * 119.99465 * 2 1 3 5 5 O 1.21285 * 120.00211 * 125.51791 * 4 2 1 6 6 N 1.34782 * 120.00087 * 305.52056 * 4 2 1 7 7 C 1.39921 * 120.00101 * 174.85939 * 6 4 2 8 8 C 1.38970 * 120.03744 * 326.73429 * 7 6 4 9 9 C 1.38148 * 120.06951 * 180.02562 * 8 7 6 10 10 C 1.38176 * 120.13847 * 359.70428 * 9 8 7 11 11 C 1.38909 * 120.06854 * 0.55572 * 10 9 8 12 12 O 1.35749 * 120.03419 * 179.74856 * 11 10 9 13 13 C 1.34824 * 117.00546 * 174.13519 * 12 11 10 14 14 H 1.08004 * 119.99345 * 5.07783 * 13 12 11 15 15 C 1.38653 * 120.00641 * 185.07922 * 13 12 11 16 16 N 1.31560 * 119.99599 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00272 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47015 * 60.00074 * 17 15 13 19 19 H 1.48500 * 109.46971 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47248 * 300.00428 * 17 15 13 21 21 C 1.38710 * 120.03904 * 146.75912 * 7 6 4 22 22 C 1.50699 * 109.47369 * 239.99509 * 2 1 3 23 23 C 1.38229 * 119.99968 * 125.37954 * 22 2 1 24 24 C 1.38236 * 120.00300 * 179.76633 * 23 22 2 25 25 C 1.38240 * 119.99417 * 0.50461 * 24 23 22 26 26 C 1.38230 * 119.99988 * 359.74730 * 25 24 23 27 27 C 1.38232 * 120.00018 * 305.64804 * 22 2 1 28 28 H 1.08996 * 109.47584 * 300.00496 * 1 2 3 29 29 H 1.08998 * 109.46744 * 60.01070 * 1 2 3 30 30 H 1.09002 * 109.46693 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47629 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46639 * 299.99307 * 3 2 1 33 33 H 1.08997 * 109.47744 * 59.99678 * 3 2 1 34 34 H 0.97004 * 119.99965 * 354.85630 * 6 4 2 35 35 H 1.08001 * 119.96084 * 0.02876 * 8 7 6 36 36 H 1.08000 * 119.93016 * 179.97438 * 9 8 7 37 37 H 1.07996 * 119.96569 * 180.29759 * 10 9 8 38 38 H 0.96992 * 119.99651 * 180.02562 * 16 15 13 39 39 H 1.08008 * 120.06626 * 0.02562 * 21 7 6 40 40 H 1.08007 * 120.00209 * 359.97438 * 23 22 2 41 41 H 1.07999 * 120.00235 * 180.22630 * 24 23 22 42 42 H 1.07999 * 119.99970 * 179.72270 * 25 24 23 43 43 H 1.08004 * 120.00026 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.99828 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.8098 -1.6349 1.1222 6 7 1.6176 -0.3181 2.4515 7 6 1.9979 -1.0435 3.5860 8 6 2.1646 -2.4209 3.5073 9 6 2.5396 -3.1379 4.6271 10 6 2.7559 -2.4875 5.8269 11 6 2.5857 -1.1116 5.9134 12 8 2.7934 -0.4741 7.0937 13 6 2.7302 0.8726 7.0816 14 1 2.4414 1.3914 6.1794 15 6 3.0358 1.5914 8.2271 16 7 3.3871 0.9593 9.3262 17 14 2.9488 3.4573 8.2100 18 1 1.5666 3.8853 7.8760 19 1 3.3192 3.9824 9.5488 20 1 3.8908 3.9875 7.1918 21 6 2.2084 -0.3887 4.7905 22 6 2.0324 -0.7105 -1.2304 23 6 2.9163 -0.0756 -2.0826 24 6 3.3809 -0.7290 -3.2087 25 6 2.9535 -2.0137 -3.4880 26 6 2.0656 -2.6466 -2.6384 27 6 1.6051 -1.9951 -1.5096 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.0554 0.4670 2.5438 35 1 2.0010 -2.9314 2.5697 36 1 2.6682 -4.2083 4.5635 37 1 3.0536 -3.0501 6.6994 38 1 3.6005 1.4622 10.1276 39 1 2.0786 0.6817 4.8545 40 1 3.2465 0.9299 -1.8670 41 1 4.0743 -0.2343 -3.8726 42 1 3.3130 -2.5226 -4.3701 43 1 1.7313 -3.6502 -2.8568 44 1 0.9108 -2.4894 -0.8462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075875116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:02 Heat of formation + Delta-G solvation = -10.657734 kcal Electronic energy + Delta-G solvation = -26730.028070 eV Core-core repulsion = 22999.043012 eV Total energy + Delta-G solvation = -3730.985058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91475 -39.33854 -38.46455 -36.50147 -35.41593 -34.16083 -32.24109 -31.18307 -30.08327 -29.18941 -28.43963 -27.69907 -25.35626 -24.35892 -22.81256 -22.34993 -21.82687 -20.87096 -19.42323 -17.98769 -17.89281 -17.04559 -16.66464 -15.73834 -15.39545 -15.09749 -14.96797 -14.67574 -14.51092 -14.23902 -14.13921 -13.89382 -13.61224 -13.57110 -12.99937 -12.96066 -12.64836 -12.50738 -12.38442 -12.27176 -11.97992 -11.80631 -11.71535 -11.53944 -11.11326 -11.04281 -10.99921 -10.87476 -10.78018 -10.48688 -9.83628 -9.57546 -9.37078 -8.99231 -8.83866 -8.80748 -7.73351 -7.16272 -6.45541 -4.05504 1.21976 1.32293 1.95810 2.36712 2.85079 3.10419 3.12476 3.14999 3.20475 3.74958 3.94955 4.22672 4.48487 4.56435 4.67080 4.79804 4.87884 4.92868 4.99678 5.07698 5.25800 5.29124 5.29527 5.40987 5.45598 5.52016 5.54033 5.70237 5.78467 5.87477 5.88267 5.92097 5.97663 6.07186 6.24230 6.26998 6.35650 6.40348 6.48637 6.62752 6.88025 6.96432 6.98648 7.11404 7.30434 7.41528 7.69298 7.80440 7.98549 8.31330 8.99645 9.70052 10.72485 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.002907 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.356246 B = 9629.693236 C =10614.586174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.146 4.146 4 C 0.520 3.480 5 O -0.508 6.508 6 N -0.667 5.667 7 C 0.182 3.818 8 C -0.206 4.206 9 C -0.063 4.063 10 C -0.201 4.201 11 C 0.169 3.831 12 O -0.176 6.176 13 C -0.393 4.393 14 H 0.090 0.910 15 C 0.040 3.960 16 N -0.862 5.862 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.257 4.257 22 C -0.056 4.056 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.092 4.092 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.405 0.595 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.270 0.730 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 -0.222 -22.581 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 C -0.203 4.203 4 C 0.306 3.694 5 O -0.381 6.381 6 N -0.312 5.312 7 C 0.089 3.911 8 C -0.227 4.227 9 C -0.082 4.082 10 C -0.220 4.220 11 C 0.114 3.886 12 O -0.079 6.079 13 C -0.469 4.469 14 H 0.107 0.893 15 C -0.164 4.164 16 N -0.497 5.497 17 Si 0.764 3.236 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.279 4.279 22 C -0.057 4.057 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.110 4.110 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.086 -0.898 -22.223 22.815 hybrid contribution -0.235 1.374 0.070 1.395 sum -5.321 0.476 -22.153 22.788 Atomic orbital electron populations 1.21921 0.91555 1.03173 1.03106 1.19731 0.97379 0.96267 0.91120 1.21975 1.02199 0.92908 1.03209 1.20411 0.80890 0.84130 0.83956 1.90741 1.32592 1.28639 1.86154 1.43495 1.51743 1.30767 1.05189 1.17409 0.97877 0.90637 0.85219 1.20525 1.11094 0.91968 0.99069 1.20528 0.97375 0.98558 0.91722 1.20253 1.10960 0.92217 0.98603 1.19061 0.91934 0.91786 0.85780 1.84003 1.77519 1.21415 1.24997 1.21222 1.48190 0.78309 0.99204 0.89310 1.25271 0.96290 1.00405 0.94476 1.70025 1.42134 1.36319 1.01258 0.85805 0.78996 0.80722 0.78032 1.19541 1.20254 1.19545 1.20803 1.13866 1.00531 0.92652 1.19258 0.97488 0.94542 0.94403 1.21130 0.97014 1.00349 0.94724 1.21090 1.00156 0.95266 0.97563 1.21128 0.97983 0.95304 0.99630 1.21089 0.98035 0.99750 0.94969 1.20917 0.99521 0.93995 0.96573 0.91469 0.91008 0.91648 0.91381 0.90793 0.91441 0.75972 0.86413 0.86658 0.86392 0.91961 0.85296 0.85658 0.86189 0.86325 0.86178 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.07 37.16 0.30 -0.88 16 2 C -0.04 -0.45 0.71 -156.81 -0.11 -0.56 16 3 C -0.15 -1.28 7.10 37.16 0.26 -1.02 16 4 C 0.52 7.69 6.09 -10.98 -0.07 7.63 16 5 O -0.51 -9.46 13.21 5.55 0.07 -9.39 16 6 N -0.67 -10.00 5.13 -9.88 -0.05 -10.05 16 7 C 0.18 3.47 6.28 -83.72 -0.53 2.95 16 8 C -0.21 -3.98 8.66 -39.34 -0.34 -4.32 16 9 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 10 C -0.20 -4.34 9.99 -39.36 -0.39 -4.73 16 11 C 0.17 4.10 6.64 -39.14 -0.26 3.84 16 12 O -0.18 -5.00 9.76 0.07 0.00 -5.00 16 13 C -0.39 -10.86 9.49 30.89 0.29 -10.56 16 14 H 0.09 2.24 5.20 -52.48 -0.27 1.97 16 15 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 16 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 17 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 21 C -0.26 -5.55 9.08 -39.21 -0.36 -5.90 16 22 C -0.06 -0.65 4.24 -104.63 -0.44 -1.10 16 23 C -0.11 -1.21 8.99 -39.59 -0.36 -1.56 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 27 C -0.09 -1.07 8.37 -39.59 -0.33 -1.40 16 28 H 0.07 0.49 7.38 -51.93 -0.38 0.11 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.57 7.09 -51.93 -0.37 0.21 16 31 H 0.07 0.66 7.26 -51.93 -0.38 0.29 16 32 H 0.07 0.51 7.76 -51.93 -0.40 0.10 16 33 H 0.07 0.54 7.81 -51.93 -0.41 0.13 16 34 H 0.40 4.81 7.72 -40.82 -0.32 4.50 16 35 H 0.12 2.23 6.40 -52.49 -0.34 1.89 16 36 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 2.71 5.64 -52.48 -0.30 2.42 16 40 H 0.13 1.11 5.91 -52.48 -0.31 0.80 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 44 H 0.12 1.33 7.25 -52.49 -0.38 0.95 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -33.54 364.17 -8.29 -41.83 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.52 Total: 9.43 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -4.01 Total: -23.07 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.71 Total: -34.47 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.07 Total: -14.39 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.54 -8.29 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075875116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.168 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds