Wall clock time and date at job start Tue Mar 31 2020 14:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.50699 * 109.46968 * 119.99465 * 2 1 3 5 5 O 1.21285 * 120.00211 * 125.51791 * 4 2 1 6 6 N 1.34782 * 120.00087 * 305.52056 * 4 2 1 7 7 C 1.39921 * 120.00101 * 174.85939 * 6 4 2 8 8 C 1.38970 * 120.03744 * 326.73429 * 7 6 4 9 9 C 1.38148 * 120.06951 * 180.02562 * 8 7 6 10 10 C 1.38176 * 120.13847 * 359.70428 * 9 8 7 11 11 C 1.38909 * 120.06854 * 0.55572 * 10 9 8 12 12 O 1.35749 * 120.03419 * 179.74856 * 11 10 9 13 13 C 1.34824 * 117.00546 * 174.13519 * 12 11 10 14 14 H 1.08004 * 119.99345 * 5.07783 * 13 12 11 15 15 C 1.38653 * 120.00641 * 185.07922 * 13 12 11 16 16 N 1.31560 * 119.99599 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00272 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47015 * 60.00074 * 17 15 13 19 19 H 1.48500 * 109.46971 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47248 * 300.00428 * 17 15 13 21 21 C 1.38710 * 120.03904 * 146.75912 * 7 6 4 22 22 C 1.50699 * 109.47369 * 239.99509 * 2 1 3 23 23 C 1.38229 * 119.99968 * 125.37954 * 22 2 1 24 24 C 1.38236 * 120.00300 * 179.76633 * 23 22 2 25 25 C 1.38240 * 119.99417 * 0.50461 * 24 23 22 26 26 C 1.38230 * 119.99988 * 359.74730 * 25 24 23 27 27 C 1.38232 * 120.00018 * 305.64804 * 22 2 1 28 28 H 1.08996 * 109.47584 * 300.00496 * 1 2 3 29 29 H 1.08998 * 109.46744 * 60.01070 * 1 2 3 30 30 H 1.09002 * 109.46693 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47629 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46639 * 299.99307 * 3 2 1 33 33 H 1.08997 * 109.47744 * 59.99678 * 3 2 1 34 34 H 0.97004 * 119.99965 * 354.85630 * 6 4 2 35 35 H 1.08001 * 119.96084 * 0.02876 * 8 7 6 36 36 H 1.08000 * 119.93016 * 179.97438 * 9 8 7 37 37 H 1.07996 * 119.96569 * 180.29759 * 10 9 8 38 38 H 0.96992 * 119.99651 * 180.02562 * 16 15 13 39 39 H 1.08008 * 120.06626 * 0.02562 * 21 7 6 40 40 H 1.08007 * 120.00209 * 359.97438 * 23 22 2 41 41 H 1.07999 * 120.00235 * 180.22630 * 24 23 22 42 42 H 1.07999 * 119.99970 * 179.72270 * 25 24 23 43 43 H 1.08004 * 120.00026 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.99828 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.8098 -1.6349 1.1222 6 7 1.6176 -0.3181 2.4515 7 6 1.9979 -1.0435 3.5860 8 6 2.1646 -2.4209 3.5073 9 6 2.5396 -3.1379 4.6271 10 6 2.7559 -2.4875 5.8269 11 6 2.5857 -1.1116 5.9134 12 8 2.7934 -0.4741 7.0937 13 6 2.7302 0.8726 7.0816 14 1 2.4414 1.3914 6.1794 15 6 3.0358 1.5914 8.2271 16 7 3.3871 0.9593 9.3262 17 14 2.9488 3.4573 8.2100 18 1 1.5666 3.8853 7.8760 19 1 3.3192 3.9824 9.5488 20 1 3.8908 3.9875 7.1918 21 6 2.2084 -0.3887 4.7905 22 6 2.0324 -0.7105 -1.2304 23 6 2.9163 -0.0756 -2.0826 24 6 3.3809 -0.7290 -3.2087 25 6 2.9535 -2.0137 -3.4880 26 6 2.0656 -2.6466 -2.6384 27 6 1.6051 -1.9951 -1.5096 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.0554 0.4670 2.5438 35 1 2.0010 -2.9314 2.5697 36 1 2.6682 -4.2083 4.5635 37 1 3.0536 -3.0501 6.6994 38 1 3.6005 1.4622 10.1276 39 1 2.0786 0.6817 4.8545 40 1 3.2465 0.9299 -1.8670 41 1 4.0743 -0.2343 -3.8726 42 1 3.3130 -2.5226 -4.3701 43 1 1.7313 -3.6502 -2.8568 44 1 0.9108 -2.4894 -0.8462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075875116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:01 Heat of formation + Delta-G solvation = -30.019445 kcal Electronic energy + Delta-G solvation = -26730.867657 eV Core-core repulsion = 22999.043012 eV Total energy + Delta-G solvation = -3731.824644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.04991 -40.74848 -39.76294 -38.12975 -36.38142 -35.56418 -34.22204 -31.93526 -31.21773 -30.62721 -29.94383 -28.36903 -27.32843 -25.35680 -23.92540 -23.52632 -23.13756 -22.18145 -20.68230 -19.64332 -19.39592 -18.19286 -17.71742 -17.16371 -16.83866 -16.51413 -16.12145 -15.93516 -15.71756 -15.65616 -15.40290 -15.21620 -14.94980 -14.58614 -14.34489 -14.24136 -13.71056 -13.57675 -13.40398 -13.38246 -13.13985 -13.03964 -12.71711 -12.67032 -12.65833 -12.47650 -12.42741 -12.15084 -11.77845 -11.63044 -11.43800 -11.27046 -10.80402 -10.66033 -9.76802 -9.62714 -9.36919 -8.89071 -8.46101 -6.15239 0.36257 0.44804 0.54837 0.67696 1.36202 1.46398 1.52718 1.59360 2.01421 2.18606 2.83229 2.93053 3.15052 3.39947 3.49580 3.65264 3.84319 3.97317 4.11150 4.17592 4.19940 4.29403 4.30314 4.42824 4.58409 4.60936 4.64587 4.71411 4.73117 4.78289 4.82705 4.86157 5.00588 5.10502 5.10932 5.17264 5.18556 5.22328 5.37614 5.46024 5.60431 5.64766 5.65207 5.65613 5.69815 6.01490 6.13678 6.15690 6.43673 6.97956 7.09272 7.77186 8.76727 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.002907 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.356246 B = 9629.693236 C =10614.586174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 C -0.146 4.146 4 C 0.520 3.480 5 O -0.548 6.548 6 N -0.659 5.659 7 C 0.189 3.811 8 C -0.201 4.201 9 C -0.052 4.052 10 C -0.215 4.215 11 C 0.135 3.865 12 O -0.226 6.226 13 C -0.415 4.415 14 H 0.104 0.896 15 C -0.022 4.022 16 N -0.920 5.920 17 Si 1.018 2.982 18 H -0.253 1.253 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.260 4.260 22 C -0.074 4.074 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.132 4.132 27 C -0.112 4.112 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.421 0.579 35 H 0.128 0.872 36 H 0.152 0.848 37 H 0.119 0.881 38 H 0.273 0.727 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 1.069 -25.703 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.204 4.204 4 C 0.309 3.691 5 O -0.424 6.424 6 N -0.305 5.305 7 C 0.094 3.906 8 C -0.222 4.222 9 C -0.071 4.071 10 C -0.235 4.235 11 C 0.084 3.916 12 O -0.132 6.132 13 C -0.491 4.491 14 H 0.121 0.879 15 C -0.220 4.220 16 N -0.558 5.558 17 Si 0.837 3.163 18 H -0.177 1.177 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.281 4.281 22 C -0.075 4.075 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.150 4.150 27 C -0.130 4.130 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.260 0.740 35 H 0.146 0.854 36 H 0.170 0.830 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.869 0.389 -25.408 26.080 hybrid contribution -0.013 0.741 0.770 1.068 sum -5.881 1.130 -24.638 25.356 Atomic orbital electron populations 1.21961 0.89679 1.03288 1.04696 1.19730 0.98731 0.96612 0.88383 1.22039 1.01571 0.91726 1.05021 1.21256 0.79773 0.83510 0.84601 1.90717 1.34398 1.30546 1.86695 1.43495 1.51713 1.31026 1.04236 1.17453 0.96426 0.90959 0.85730 1.20826 1.09716 0.92219 0.99398 1.20902 0.95445 1.00351 0.90354 1.20473 1.11601 0.91565 0.99847 1.19580 0.93192 0.92963 0.85866 1.83975 1.79940 1.22014 1.27255 1.21785 1.48496 0.78630 1.00157 0.87885 1.26604 0.95502 1.06172 0.93686 1.70182 1.44649 1.38709 1.02283 0.84659 0.79968 0.73334 0.78344 1.17687 1.19883 1.18258 1.20839 1.13833 1.00611 0.92848 1.19439 0.98236 0.94818 0.94977 1.21409 0.96754 1.01216 0.94924 1.21452 1.00188 0.95428 0.97633 1.21471 0.97431 0.95485 1.00163 1.21367 0.98240 1.00562 0.94835 1.21047 1.00178 0.94524 0.97246 0.90220 0.89084 0.92332 0.92474 0.88293 0.90404 0.74036 0.85433 0.83026 0.86338 0.91829 0.85122 0.84194 0.83932 0.84059 0.84752 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.07 71.98 0.58 -1.39 16 2 C -0.03 -0.60 0.71 -53.67 -0.04 -0.64 16 3 C -0.15 -2.17 7.10 71.98 0.51 -1.65 16 4 C 0.52 14.57 6.09 87.66 0.53 15.11 16 5 O -0.55 -19.85 13.21 -3.05 -0.04 -19.89 16 6 N -0.66 -18.62 5.13 -303.55 -1.56 -20.18 16 7 C 0.19 7.03 6.28 38.14 0.24 7.27 16 8 C -0.20 -7.49 8.66 22.42 0.19 -7.29 16 9 C -0.05 -1.92 10.03 22.23 0.22 -1.70 16 10 C -0.22 -9.46 9.99 22.42 0.22 -9.24 16 11 C 0.14 6.78 6.64 22.56 0.15 6.93 16 12 O -0.23 -13.47 9.76 -22.67 -0.22 -13.69 16 13 C -0.41 -23.67 9.49 67.92 0.64 -23.03 16 14 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 15 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 16 N -0.92 -56.04 13.67 21.61 0.30 -55.74 16 17 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 18 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 21 C -0.26 -11.27 9.08 22.51 0.20 -11.07 16 22 C -0.07 -1.59 4.24 -19.87 -0.08 -1.68 16 23 C -0.13 -2.38 8.99 22.27 0.20 -2.18 16 24 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 26 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 27 C -0.11 -2.49 8.37 22.27 0.19 -2.31 16 28 H 0.08 0.92 7.38 -2.39 -0.02 0.90 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.92 7.09 -2.39 -0.02 0.90 16 31 H 0.06 0.98 7.26 -2.39 -0.02 0.97 16 32 H 0.10 0.99 7.76 -2.38 -0.02 0.97 16 33 H 0.08 0.99 7.81 -2.39 -0.02 0.97 16 34 H 0.42 9.07 7.72 -92.71 -0.72 8.36 16 35 H 0.13 4.59 6.40 -2.91 -0.02 4.58 16 36 H 0.15 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.13 5.52 5.64 -2.91 -0.02 5.50 16 40 H 0.14 2.12 5.91 -2.91 -0.02 2.10 16 41 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 44 H 0.11 2.49 7.25 -2.91 -0.02 2.47 16 Total: -1.00 -76.41 364.17 5.73 -70.68 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.32 Total: 35.04 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 4.91 Total: -39.93 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.26 Total: -75.92 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.26 Total: -33.58 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -76.41 5.73 -70.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075875116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.661 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds