Wall clock time and date at job start Tue Mar 31 2020 13:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38284 * 119.97007 * 2 1 4 4 C 1.38246 * 120.10877 * 180.27505 * 3 2 1 5 5 C 1.38173 * 120.05637 * 359.44729 * 4 3 2 6 6 C 1.50700 * 120.02980 * 180.25280 * 5 4 3 7 7 C 1.38713 * 119.94021 * 0.53294 * 5 4 3 8 8 O 1.35894 * 120.05413 * 179.76556 * 7 5 4 9 9 C 1.42901 * 117.00318 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47551 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99970 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00173 * 180.02562 * 10 9 8 13 13 C 1.37137 * 119.99637 * 354.94928 * 12 10 9 14 14 H 1.07997 * 120.00126 * 332.86340 * 13 12 10 15 15 C 1.38894 * 119.99848 * 152.87069 * 13 12 10 16 16 N 1.31422 * 120.00221 * 157.86089 * 15 13 12 17 17 Si 1.86799 * 119.99763 * 337.86516 * 15 13 12 18 18 H 1.48494 * 109.47587 * 85.73913 * 17 15 13 19 19 H 1.48507 * 109.46869 * 205.74047 * 17 15 13 20 20 H 1.48502 * 109.47132 * 325.73473 * 17 15 13 21 21 C 1.39790 * 119.99773 * 174.94957 * 12 10 9 22 22 C 1.38960 * 120.07851 * 297.86488 * 21 12 10 23 23 C 1.38082 * 119.91837 * 179.79520 * 22 21 12 24 24 C 1.38307 * 120.08037 * 0.46100 * 23 22 21 25 25 C 1.38307 * 120.15714 * 359.79506 * 24 23 22 26 26 C 1.38091 * 120.07555 * 359.97213 * 25 24 23 27 27 C 1.38119 * 119.96957 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47150 * 89.99713 * 1 2 3 29 29 H 1.08990 * 109.47085 * 210.00055 * 1 2 3 30 30 H 1.09000 * 109.47103 * 329.99979 * 1 2 3 31 31 H 1.07996 * 119.95241 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.97182 * 179.72647 * 4 3 2 33 33 H 1.09003 * 109.46749 * 270.28164 * 6 5 4 34 34 H 1.09002 * 109.47135 * 30.27601 * 6 5 4 35 35 H 1.08999 * 109.47163 * 150.27890 * 6 5 4 36 36 H 1.09002 * 109.46444 * 299.99903 * 9 8 7 37 37 H 1.08999 * 109.47101 * 59.99174 * 9 8 7 38 38 H 0.96997 * 120.00164 * 180.02562 * 16 15 13 39 39 H 1.07991 * 120.03883 * 0.02562 * 22 21 12 40 40 H 1.07997 * 119.96285 * 180.25420 * 23 22 21 41 41 H 1.08001 * 119.92369 * 179.76534 * 24 23 22 42 42 H 1.07996 * 119.96626 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.03909 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.03118 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 -0.0057 5 6 4.2753 0.0071 0.0000 6 6 5.7822 0.0115 -0.0005 7 6 3.5846 -1.1959 0.0004 8 8 4.2658 -2.3718 0.0013 9 6 3.4893 -3.5714 0.0022 10 6 4.4089 -4.7651 0.0037 11 8 5.6111 -4.6045 0.0035 12 7 3.8956 -6.0114 0.0043 13 6 2.5405 -6.1946 0.1080 14 1 1.9326 -5.4564 0.6098 15 6 1.9499 -7.3298 -0.4321 16 7 0.7828 -7.7384 0.0129 17 14 2.8146 -8.2758 -1.7911 18 1 3.7637 -9.2476 -1.1912 19 1 1.8083 -9.0043 -2.6046 20 1 3.5592 -7.3274 -2.6579 21 6 4.7446 -7.1170 -0.1009 22 6 5.5259 -7.2895 -1.2370 23 6 6.3665 -8.3805 -1.3356 24 6 6.4242 -9.3061 -0.3095 25 6 5.6440 -9.1404 0.8204 26 6 4.8047 -8.0491 0.9279 27 6 2.1970 -1.1965 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6566 2.1325 0.0004 32 1 4.1176 2.1382 -0.0102 33 1 6.1452 0.0124 -1.0283 34 1 6.1432 0.9026 0.5131 35 1 6.1483 -0.8774 0.5134 36 1 2.8606 -3.5964 0.8923 37 1 2.8604 -3.5978 -0.8876 38 1 0.3705 -8.5313 -0.3640 39 1 5.4786 -6.5692 -2.0401 40 1 6.9771 -8.5131 -2.2164 41 1 7.0797 -10.1605 -0.3909 42 1 5.6918 -9.8648 1.6200 43 1 4.1954 -7.9205 1.8103 44 1 1.6570 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078296672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:28 Heat of formation + Delta-G solvation = -8.684006 kcal Electronic energy + Delta-G solvation = -27152.255939 eV Core-core repulsion = 23421.356468 eV Total energy + Delta-G solvation = -3730.899470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28881 -39.73015 -37.97369 -36.95322 -34.99905 -33.65545 -32.24124 -30.40357 -30.22713 -29.61946 -29.09328 -27.51615 -25.14298 -24.63811 -22.78298 -22.04499 -21.59014 -20.87657 -19.23254 -18.23039 -17.24935 -16.49762 -16.03414 -15.79522 -15.58196 -15.43482 -15.27187 -14.69047 -14.14849 -13.95117 -13.89538 -13.68626 -13.25500 -13.10664 -12.95537 -12.90120 -12.75230 -12.72918 -12.52773 -12.33647 -11.98921 -11.70294 -11.46430 -11.17339 -11.13996 -11.00128 -10.77657 -10.69703 -10.62242 -10.54100 -10.06058 -9.45545 -8.94588 -8.57679 -8.54827 -8.32031 -7.85940 -7.76286 -6.68769 -4.27709 1.41998 1.59351 1.82680 1.95575 3.06796 3.18778 3.23639 3.27711 3.42955 3.84088 4.07096 4.33372 4.36232 4.81258 4.84850 4.91693 5.13602 5.24768 5.35127 5.39504 5.43652 5.48659 5.60605 5.61726 5.65295 5.68355 5.74908 5.76475 5.83355 5.87305 5.89669 5.97126 6.08260 6.12007 6.27045 6.40073 6.46867 6.55382 6.62750 6.70449 6.84883 6.95760 7.01016 7.05606 7.16953 7.51270 7.64264 7.76777 8.06337 8.66363 9.05563 9.35103 10.38568 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.003731 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.257035 B = 7503.839578 C = 8740.354492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.053 4.053 3 C -0.164 4.164 4 C -0.083 4.083 5 C -0.126 4.126 6 C -0.104 4.104 7 C 0.141 3.859 8 O -0.291 6.291 9 C 0.062 3.938 10 C 0.483 3.517 11 O -0.559 6.559 12 N -0.417 5.417 13 C -0.365 4.365 14 H 0.113 0.887 15 C 0.081 3.919 16 N -0.846 5.846 17 Si 0.860 3.140 18 H -0.251 1.251 19 H -0.291 1.291 20 H -0.260 1.260 21 C 0.160 3.840 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.114 4.114 26 C -0.110 4.110 27 C -0.208 4.208 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.279 0.721 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.128 0.872 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 8.775 -0.649 9.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.182 4.182 4 C -0.101 4.101 5 C -0.126 4.126 6 C -0.161 4.161 7 C 0.095 3.905 8 O -0.203 6.203 9 C -0.016 4.016 10 C 0.273 3.727 11 O -0.440 6.440 12 N -0.135 5.135 13 C -0.489 4.489 14 H 0.131 0.869 15 C -0.129 4.129 16 N -0.479 5.479 17 Si 0.686 3.314 18 H -0.175 1.175 19 H -0.219 1.219 20 H -0.184 1.184 21 C 0.068 3.932 22 C -0.146 4.146 23 C -0.135 4.135 24 C -0.157 4.157 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.226 4.226 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.949 8.715 -0.628 9.222 hybrid contribution -0.344 -0.717 -0.730 1.080 sum 2.605 7.998 -1.358 8.521 Atomic orbital electron populations 1.20808 0.91179 1.02802 1.02386 1.19671 0.95902 0.92489 0.97276 1.20832 0.94038 0.97253 1.06062 1.20787 0.93933 0.96550 0.98847 1.19247 0.96566 0.90269 1.06560 1.20590 0.90603 1.02691 1.02193 1.18917 0.90313 0.85950 0.95343 1.86104 1.34860 1.11582 1.87743 1.22352 0.93421 0.81988 1.03805 1.19803 0.88245 0.83707 0.80985 1.90633 1.15117 1.85581 1.52642 1.41362 1.06472 1.01590 1.64026 1.19169 0.79462 1.10746 1.39567 0.86915 1.25177 0.95316 0.96024 0.96421 1.69756 1.16984 1.22988 1.38191 0.87165 0.79613 0.81583 0.83041 1.17510 1.21861 1.18418 1.17620 0.92352 0.89747 0.93527 1.21190 0.97907 0.98424 0.97108 1.20849 0.98946 0.94789 0.98948 1.20962 1.00612 0.99466 0.94680 1.20918 0.96810 0.97534 0.98002 1.21185 0.98737 0.94915 0.98124 1.21262 0.92991 0.99303 1.09081 0.91089 0.91275 0.91630 0.86333 0.85759 0.91630 0.92152 0.90709 0.89501 0.88963 0.91041 0.86289 0.86418 0.86644 0.86293 0.85382 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.01 36.01 0.36 -0.85 16 2 C -0.05 -0.70 5.88 -104.65 -0.62 -1.32 16 3 C -0.16 -1.99 9.70 -39.56 -0.38 -2.38 16 4 C -0.08 -1.04 9.70 -39.60 -0.38 -1.43 16 5 C -0.13 -1.88 5.89 -104.47 -0.62 -2.49 16 6 C -0.10 -1.41 9.79 36.01 0.35 -1.06 16 7 C 0.14 2.39 6.66 -39.21 -0.26 2.13 16 8 O -0.29 -5.69 8.71 -39.31 -0.34 -6.04 16 9 C 0.06 1.22 3.90 36.00 0.14 1.36 16 10 C 0.48 11.25 7.52 -10.99 -0.08 11.16 16 11 O -0.56 -14.31 16.06 -14.35 -0.23 -14.54 16 12 N -0.42 -9.92 2.49 -58.98 -0.15 -10.07 16 13 C -0.36 -9.01 9.12 -14.94 -0.14 -9.15 16 14 H 0.11 2.79 6.90 -52.49 -0.36 2.43 16 15 C 0.08 2.05 5.20 -17.48 -0.09 1.96 16 16 N -0.85 -22.26 13.96 55.49 0.77 -21.49 16 17 Si 0.86 20.05 23.47 -169.99 -3.99 16.06 16 18 H -0.25 -5.73 5.26 56.52 0.30 -5.43 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.26 -6.07 6.11 56.52 0.35 -5.73 16 21 C 0.16 3.66 2.29 -83.69 -0.19 3.46 16 22 C -0.13 -2.72 5.86 -39.37 -0.23 -2.95 16 23 C -0.12 -2.14 9.55 -39.61 -0.38 -2.52 16 24 C -0.14 -2.36 9.73 -39.53 -0.38 -2.75 16 25 C -0.11 -2.05 9.63 -39.61 -0.38 -2.43 16 26 C -0.11 -2.32 8.48 -39.37 -0.33 -2.66 16 27 C -0.21 -3.19 8.69 -39.43 -0.34 -3.53 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.16 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.07 1.16 7.53 -51.93 -0.39 0.77 16 36 H 0.09 1.60 7.01 -51.93 -0.36 1.24 16 37 H 0.09 1.71 7.66 -51.93 -0.40 1.32 16 38 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.12 2.60 7.71 -52.49 -0.40 2.20 16 40 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 42 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 44 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -29.80 361.09 -8.64 -38.44 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.19 Total: 7.61 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -3.96 Total: -15.43 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.63 Total: -31.55 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.57 Total: -20.57 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -3.99 Total: 16.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.80 -8.64 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078296672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.755 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds