Wall clock time and date at job start Tue Mar 31 2020 13:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38284 * 119.97007 * 2 1 4 4 C 1.38246 * 120.10877 * 180.27505 * 3 2 1 5 5 C 1.38173 * 120.05637 * 359.44729 * 4 3 2 6 6 C 1.50700 * 120.02980 * 180.25280 * 5 4 3 7 7 C 1.38713 * 119.94021 * 0.53294 * 5 4 3 8 8 O 1.35894 * 120.05413 * 179.76556 * 7 5 4 9 9 C 1.42901 * 117.00318 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47551 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99970 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00173 * 180.02562 * 10 9 8 13 13 C 1.37137 * 119.99637 * 354.94928 * 12 10 9 14 14 H 1.07997 * 120.00126 * 332.86340 * 13 12 10 15 15 C 1.38894 * 119.99848 * 152.87069 * 13 12 10 16 16 N 1.31422 * 120.00221 * 157.86089 * 15 13 12 17 17 Si 1.86799 * 119.99763 * 337.86516 * 15 13 12 18 18 H 1.48494 * 109.47587 * 85.73913 * 17 15 13 19 19 H 1.48507 * 109.46869 * 205.74047 * 17 15 13 20 20 H 1.48502 * 109.47132 * 325.73473 * 17 15 13 21 21 C 1.39790 * 119.99773 * 174.94957 * 12 10 9 22 22 C 1.38960 * 120.07851 * 297.86488 * 21 12 10 23 23 C 1.38082 * 119.91837 * 179.79520 * 22 21 12 24 24 C 1.38307 * 120.08037 * 0.46100 * 23 22 21 25 25 C 1.38307 * 120.15714 * 359.79506 * 24 23 22 26 26 C 1.38091 * 120.07555 * 359.97213 * 25 24 23 27 27 C 1.38119 * 119.96957 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47150 * 89.99713 * 1 2 3 29 29 H 1.08990 * 109.47085 * 210.00055 * 1 2 3 30 30 H 1.09000 * 109.47103 * 329.99979 * 1 2 3 31 31 H 1.07996 * 119.95241 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.97182 * 179.72647 * 4 3 2 33 33 H 1.09003 * 109.46749 * 270.28164 * 6 5 4 34 34 H 1.09002 * 109.47135 * 30.27601 * 6 5 4 35 35 H 1.08999 * 109.47163 * 150.27890 * 6 5 4 36 36 H 1.09002 * 109.46444 * 299.99903 * 9 8 7 37 37 H 1.08999 * 109.47101 * 59.99174 * 9 8 7 38 38 H 0.96997 * 120.00164 * 180.02562 * 16 15 13 39 39 H 1.07991 * 120.03883 * 0.02562 * 22 21 12 40 40 H 1.07997 * 119.96285 * 180.25420 * 23 22 21 41 41 H 1.08001 * 119.92369 * 179.76534 * 24 23 22 42 42 H 1.07996 * 119.96626 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.03909 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.03118 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 -0.0057 5 6 4.2753 0.0071 0.0000 6 6 5.7822 0.0115 -0.0005 7 6 3.5846 -1.1959 0.0004 8 8 4.2658 -2.3718 0.0013 9 6 3.4893 -3.5714 0.0022 10 6 4.4089 -4.7651 0.0037 11 8 5.6111 -4.6045 0.0035 12 7 3.8956 -6.0114 0.0043 13 6 2.5405 -6.1946 0.1080 14 1 1.9326 -5.4564 0.6098 15 6 1.9499 -7.3298 -0.4321 16 7 0.7828 -7.7384 0.0129 17 14 2.8146 -8.2758 -1.7911 18 1 3.7637 -9.2476 -1.1912 19 1 1.8083 -9.0043 -2.6046 20 1 3.5592 -7.3274 -2.6579 21 6 4.7446 -7.1170 -0.1009 22 6 5.5259 -7.2895 -1.2370 23 6 6.3665 -8.3805 -1.3356 24 6 6.4242 -9.3061 -0.3095 25 6 5.6440 -9.1404 0.8204 26 6 4.8047 -8.0491 0.9279 27 6 2.1970 -1.1965 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6566 2.1325 0.0004 32 1 4.1176 2.1382 -0.0102 33 1 6.1452 0.0124 -1.0283 34 1 6.1432 0.9026 0.5131 35 1 6.1483 -0.8774 0.5134 36 1 2.8606 -3.5964 0.8923 37 1 2.8604 -3.5978 -0.8876 38 1 0.3705 -8.5313 -0.3640 39 1 5.4786 -6.5692 -2.0401 40 1 6.9771 -8.5131 -2.2164 41 1 7.0797 -10.1605 -0.3909 42 1 5.6918 -9.8648 1.6200 43 1 4.1954 -7.9205 1.8103 44 1 1.6570 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078296672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:27 Heat of formation + Delta-G solvation = -23.377579 kcal Electronic energy + Delta-G solvation = -27152.893100 eV Core-core repulsion = 23421.356468 eV Total energy + Delta-G solvation = -3731.536631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82916 -41.12445 -39.47730 -38.34224 -36.82905 -34.70608 -34.17236 -31.91731 -31.64631 -30.92062 -30.08604 -29.06657 -27.04178 -25.66461 -24.16401 -23.56191 -22.93826 -22.02739 -21.01023 -19.90915 -18.67673 -18.03160 -17.72151 -17.35114 -16.98872 -16.93351 -16.42379 -16.27940 -15.77878 -15.38560 -15.14609 -14.99007 -14.79195 -14.52281 -14.45954 -14.32248 -14.09018 -14.03523 -13.83801 -13.62687 -13.38892 -12.89899 -12.74506 -12.67734 -12.64324 -12.48596 -12.22045 -12.20268 -11.87361 -11.82087 -11.80090 -11.27704 -10.77167 -10.39136 -9.85866 -9.66102 -9.43962 -9.02243 -8.65289 -6.25006 0.28061 0.34797 0.42612 0.47870 1.21193 1.32971 1.38303 1.60390 1.71098 2.17177 2.69871 2.75904 2.80258 2.98633 3.68711 3.82938 3.92201 3.97792 4.04127 4.06056 4.12531 4.15300 4.23465 4.29526 4.37169 4.51132 4.61822 4.64095 4.66154 4.76795 4.77281 4.79907 4.83423 4.89038 5.06638 5.16517 5.25010 5.36631 5.40690 5.45496 5.52286 5.53181 5.55713 5.65872 5.81385 5.91040 5.94137 6.22172 6.39809 6.74634 7.15868 7.50528 8.44828 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.003731 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.257035 B = 7503.839578 C = 8740.354492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.060 4.060 3 C -0.155 4.155 4 C -0.077 4.077 5 C -0.142 4.142 6 C -0.100 4.100 7 C 0.103 3.897 8 O -0.313 6.313 9 C 0.076 3.924 10 C 0.474 3.526 11 O -0.589 6.589 12 N -0.422 5.422 13 C -0.363 4.363 14 H 0.102 0.898 15 C 0.053 3.947 16 N -0.877 5.877 17 Si 0.905 3.095 18 H -0.240 1.240 19 H -0.294 1.294 20 H -0.268 1.268 21 C 0.123 3.877 22 C -0.149 4.149 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.110 4.110 26 C -0.132 4.132 27 C -0.223 4.223 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.283 0.717 39 H 0.103 0.897 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.116 0.884 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 9.147 -1.029 9.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.060 4.060 3 C -0.173 4.173 4 C -0.095 4.095 5 C -0.142 4.142 6 C -0.157 4.157 7 C 0.058 3.942 8 O -0.227 6.227 9 C -0.001 4.001 10 C 0.265 3.735 11 O -0.473 6.473 12 N -0.140 5.140 13 C -0.488 4.488 14 H 0.119 0.881 15 C -0.155 4.155 16 N -0.512 5.512 17 Si 0.731 3.269 18 H -0.164 1.164 19 H -0.221 1.221 20 H -0.194 1.194 21 C 0.032 3.968 22 C -0.169 4.169 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.128 4.128 26 C -0.152 4.152 27 C -0.242 4.242 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.172 0.828 32 H 0.177 0.823 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.171 0.829 41 H 0.182 0.818 42 H 0.174 0.826 43 H 0.134 0.866 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.744 9.079 -1.004 9.872 hybrid contribution -0.528 -0.755 -0.574 1.085 sum 3.217 8.324 -1.578 9.062 Atomic orbital electron populations 1.20862 0.89201 1.03702 1.03255 1.20058 0.97463 0.92101 0.96389 1.21291 0.94132 0.98114 1.03767 1.21204 0.94394 0.96791 0.97102 1.19593 0.97306 0.90451 1.06897 1.20573 0.90099 1.02675 1.02357 1.19315 0.91249 0.85560 0.98038 1.86056 1.35627 1.12205 1.88777 1.22106 0.92478 0.81477 1.04081 1.20349 0.88373 0.84501 0.80267 1.90582 1.16403 1.86086 1.54211 1.41430 1.06273 1.02332 1.63925 1.19128 0.80192 1.10362 1.39096 0.88078 1.25574 0.95708 0.96703 0.97492 1.69798 1.18145 1.23917 1.39364 0.86454 0.78779 0.80665 0.81047 1.16361 1.22119 1.19357 1.17968 0.93743 0.90134 0.94977 1.21275 0.99271 0.99764 0.96585 1.21337 0.97924 0.93516 1.00683 1.21545 0.99746 0.99971 0.93073 1.21405 0.95218 0.96726 0.99460 1.21318 1.00097 0.96174 0.97625 1.21346 0.92588 1.00183 1.10081 0.90127 0.91902 0.89248 0.82776 0.82253 0.91374 0.89128 0.93672 0.89065 0.88615 0.90702 0.87923 0.82909 0.81765 0.82593 0.86565 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 10.01 71.24 0.71 -1.48 16 2 C -0.06 -1.52 5.88 -19.88 -0.12 -1.64 16 3 C -0.16 -3.33 9.70 22.28 0.22 -3.11 16 4 C -0.08 -1.75 9.70 22.26 0.22 -1.53 16 5 C -0.14 -4.22 5.89 -19.77 -0.12 -4.33 16 6 C -0.10 -2.73 9.79 71.24 0.70 -2.04 16 7 C 0.10 3.66 6.66 22.51 0.15 3.81 16 8 O -0.31 -13.16 8.71 -73.32 -0.64 -13.79 16 9 C 0.08 3.24 3.90 71.23 0.28 3.52 16 10 C 0.47 23.47 7.52 87.65 0.66 24.13 16 11 O -0.59 -31.92 16.06 16.00 0.26 -31.66 16 12 N -0.42 -21.04 2.49 -458.90 -1.14 -22.18 16 13 C -0.36 -18.75 9.12 84.02 0.77 -17.98 16 14 H 0.10 5.33 6.90 -2.91 -0.02 5.31 16 15 C 0.05 2.74 5.20 84.91 0.44 3.18 16 16 N -0.88 -47.26 13.96 21.65 0.30 -46.96 16 17 Si 0.91 41.95 23.47 68.60 1.61 43.56 16 18 H -0.24 -10.53 5.26 99.48 0.52 -10.01 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.27 -12.68 6.11 99.48 0.61 -12.07 16 21 C 0.12 5.73 2.29 38.22 0.09 5.82 16 22 C -0.15 -6.42 5.86 22.41 0.13 -6.29 16 23 C -0.12 -3.95 9.55 22.25 0.21 -3.74 16 24 C -0.13 -3.74 9.73 22.30 0.22 -3.52 16 25 C -0.11 -3.64 9.63 22.25 0.21 -3.43 16 26 C -0.13 -5.59 8.48 22.41 0.19 -5.40 16 27 C -0.22 -7.10 8.69 22.37 0.19 -6.91 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 30 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 31 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.84 8.09 -2.39 -0.02 1.82 16 35 H 0.04 1.48 7.53 -2.39 -0.02 1.46 16 36 H 0.09 3.68 7.01 -2.39 -0.02 3.66 16 37 H 0.10 3.87 7.66 -2.39 -0.02 3.86 16 38 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.10 4.64 7.71 -2.92 -0.02 4.62 16 40 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 41 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 43 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 44 H 0.12 4.00 6.30 -2.91 -0.02 3.98 16 Total: -1.00 -68.26 361.09 6.26 -62.01 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.72 Total: 29.97 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 5.15 Total: -20.94 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.84 Total: -69.14 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.38 Total: -45.46 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.61 Total: 43.56 kcal Total: -68.26 6.26 -62.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078296672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.631 kcal (2) G-P(sol) polarization free energy of solvation -68.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds