Wall clock time and date at job start Tue Mar 31 2020 14:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47041 * 2 1 4 4 C 1.38259 * 119.94600 * 90.00477 * 3 2 1 5 5 C 1.38145 * 120.05470 * 180.02562 * 4 3 2 6 6 C 1.38726 * 119.94730 * 359.97438 * 5 4 3 7 7 O 1.35900 * 120.05805 * 180.02562 * 6 5 4 8 8 C 1.42901 * 117.00130 * 184.99385 * 7 6 5 9 9 C 1.50698 * 109.47098 * 184.58638 * 8 7 6 10 10 O 1.21272 * 120.00385 * 4.97093 * 9 8 7 11 11 N 1.34784 * 119.99678 * 184.96389 * 9 8 7 12 12 C 1.37136 * 120.00408 * 4.31734 * 11 9 8 13 13 H 1.08006 * 120.00203 * 59.07162 * 12 11 9 14 14 C 1.38885 * 119.99856 * 239.07955 * 12 11 9 15 15 N 1.31414 * 120.00244 * 357.01482 * 14 12 11 16 16 Si 1.86802 * 120.00059 * 177.02296 * 14 12 11 17 17 H 1.48504 * 109.47348 * 59.98965 * 16 14 12 18 18 H 1.48497 * 109.47524 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46721 * 299.99501 * 16 14 12 20 20 C 1.39792 * 119.99941 * 184.31085 * 11 9 8 21 21 C 1.38953 * 120.07977 * 174.21485 * 20 11 9 22 22 C 1.38084 * 119.92411 * 179.97438 * 21 20 11 23 23 C 1.38313 * 120.07759 * 359.97438 * 22 21 20 24 24 C 1.38309 * 120.15375 * 0.03988 * 23 22 21 25 25 C 1.38085 * 120.07962 * 359.95974 * 24 23 22 26 26 C 1.38730 * 119.88772 * 0.27906 * 6 5 4 27 27 C 1.38148 * 119.94212 * 359.47310 * 26 6 5 28 28 H 1.09009 * 109.46863 * 300.00076 * 1 2 3 29 29 H 1.08996 * 109.47356 * 59.99904 * 1 2 3 30 30 H 1.08997 * 109.47208 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47232 * 239.99996 * 2 1 3 32 32 H 1.09000 * 109.47509 * 119.99628 * 2 1 3 33 33 H 1.07997 * 119.97257 * 359.97117 * 4 3 2 34 34 H 1.08000 * 120.02675 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47263 * 64.58623 * 8 7 6 36 36 H 1.09005 * 109.46964 * 304.58420 * 8 7 6 37 37 H 0.97000 * 120.00385 * 184.99781 * 15 14 12 38 38 H 1.07997 * 120.03703 * 359.70184 * 21 20 11 39 39 H 1.07996 * 119.96527 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.92297 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.96079 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.03974 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.03327 * 179.71788 * 26 6 5 44 44 H 1.07998 * 119.97060 * 180.23189 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0715 1.1980 5 6 2.7224 3.3741 1.2006 6 6 2.9539 4.0292 -0.0001 7 8 3.4069 5.3105 -0.0001 8 6 3.5185 5.9591 -1.2686 9 6 4.1379 7.3205 -1.0838 10 8 4.5352 7.6626 0.0097 11 7 4.2504 8.1578 -2.1341 12 6 3.7221 7.8073 -3.3501 13 1 2.6660 7.6002 -3.4407 14 6 4.5453 7.7186 -4.4652 15 7 5.8190 8.0272 -4.3680 16 14 3.8419 7.1609 -6.1034 17 1 2.7668 8.0948 -6.5243 18 1 4.9178 7.1517 -7.1268 19 1 3.2816 5.7929 -5.9614 20 6 4.9054 9.3835 -1.9837 21 6 5.1284 10.1943 -3.0899 22 6 5.7753 11.4047 -2.9376 23 6 6.2007 11.8106 -1.6857 24 6 5.9807 11.0060 -0.5825 25 6 5.3345 9.7943 -0.7274 26 6 2.7172 3.3760 -1.2008 27 6 2.2621 2.0716 -1.1981 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0816 1.5613 2.1325 34 1 2.9016 3.8821 2.1367 35 1 2.5277 6.0676 -1.7097 36 1 4.1466 5.3607 -1.9286 37 1 6.3780 8.0354 -5.1606 38 1 4.8000 9.8762 -4.0683 39 1 5.9493 12.0352 -3.7969 40 1 6.7060 12.7580 -1.5694 41 1 6.3146 11.3258 0.3936 42 1 5.1634 9.1664 0.1344 43 1 2.8923 3.8853 -2.1370 44 1 2.0812 1.5613 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078296677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:24 Heat of formation + Delta-G solvation = -3.394211 kcal Electronic energy + Delta-G solvation = -26660.802370 eV Core-core repulsion = 22930.132282 eV Total energy + Delta-G solvation = -3730.670088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.19494 -39.54165 -37.78801 -36.87291 -35.11153 -33.55081 -32.08985 -30.99015 -29.82649 -29.55919 -28.62117 -27.03574 -25.24932 -23.61251 -22.83445 -21.76301 -21.21626 -20.65216 -19.54732 -18.01962 -17.84664 -16.21854 -15.91317 -15.79812 -15.47948 -15.42369 -15.14520 -14.52326 -14.35686 -13.98981 -13.87033 -13.55822 -13.38695 -13.17834 -13.04685 -12.86805 -12.58175 -12.34228 -12.13115 -12.10448 -11.73904 -11.53493 -11.40749 -11.21063 -11.10691 -11.02894 -10.89356 -10.65596 -10.57826 -10.48089 -10.04753 -9.26426 -8.90396 -8.83574 -8.21855 -7.88975 -7.79534 -6.98914 -6.34772 -4.72925 1.44265 1.53329 2.38177 2.57416 2.96598 3.02499 3.05439 3.24454 3.60529 3.84936 3.88806 4.58439 4.64634 4.75568 4.81735 4.99867 5.09182 5.12498 5.25178 5.39359 5.43343 5.49433 5.60242 5.68454 5.73622 5.78243 5.81720 5.87811 5.90834 6.04550 6.05586 6.12835 6.16413 6.40262 6.51915 6.68610 6.70745 6.73825 6.88107 6.90231 7.12024 7.14287 7.50444 7.59726 7.63472 7.71025 7.76090 7.97637 8.38445 8.71508 9.10994 9.48347 10.35472 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.003300 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.034328 B = 8482.388786 C =10130.644513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.133 4.133 4 C -0.080 4.080 5 C -0.152 4.152 6 C 0.137 3.863 7 O -0.296 6.296 8 C 0.063 3.937 9 C 0.499 3.501 10 O -0.545 6.545 11 N -0.380 5.380 12 C -0.380 4.380 13 H 0.095 0.905 14 C 0.056 3.944 15 N -0.839 5.839 16 Si 0.918 3.082 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.267 1.267 20 C 0.179 3.821 21 C -0.091 4.091 22 C -0.128 4.128 23 C -0.170 4.170 24 C -0.124 4.124 25 C -0.191 4.191 26 C -0.208 4.208 27 C -0.077 4.077 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.277 0.723 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.174 0.826 43 H 0.133 0.867 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 -9.831 2.923 12.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.133 4.133 4 C -0.098 4.098 5 C -0.171 4.171 6 C 0.091 3.909 7 O -0.208 6.208 8 C -0.015 4.015 9 C 0.289 3.711 10 O -0.428 6.428 11 N -0.090 5.090 12 C -0.507 4.507 13 H 0.112 0.888 14 C -0.155 4.155 15 N -0.470 5.470 16 Si 0.743 3.257 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.192 1.192 20 C 0.083 3.917 21 C -0.111 4.111 22 C -0.147 4.147 23 C -0.189 4.189 24 C -0.143 4.143 25 C -0.211 4.211 26 C -0.227 4.227 27 C -0.095 4.095 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.190 0.810 43 H 0.151 0.849 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.158 -9.671 3.495 11.986 hybrid contribution -0.034 -0.123 -1.482 1.487 sum -6.193 -9.793 2.014 11.761 Atomic orbital electron populations 1.21766 0.95132 1.01296 1.02247 1.20428 0.95853 0.92781 1.02419 1.19727 1.03718 0.96712 0.93138 1.20753 0.98004 0.93543 0.97529 1.20427 1.05018 0.95190 0.96468 1.19127 0.93533 0.84164 0.94101 1.86116 1.79839 1.23043 1.31807 1.22332 1.02423 0.92983 0.83725 1.20246 0.80702 0.85499 0.84644 1.90236 1.50837 1.75199 1.26499 1.40780 1.47146 1.11716 1.09341 1.19349 0.94042 1.52463 0.84840 0.88773 1.25716 0.94709 0.94446 1.00586 1.70019 1.04916 1.41022 1.31059 0.86126 0.78938 0.79933 0.80687 1.19248 1.20430 1.19181 1.18286 0.94643 0.85563 0.93189 1.21080 0.98864 0.92291 0.98887 1.20778 1.00874 0.96728 0.96348 1.20811 1.04624 0.99873 0.93570 1.20848 1.00628 0.95297 0.97485 1.22775 1.01169 0.97888 0.99226 1.21403 1.06806 0.96779 0.97667 1.20788 0.97422 0.93777 0.97507 0.92615 0.92594 0.92755 0.91395 0.91393 0.85801 0.85226 0.89311 0.88907 0.91183 0.84550 0.87775 0.88193 0.87717 0.81025 0.84913 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.85 16 3 C -0.13 -1.55 5.13 -104.60 -0.54 -2.09 16 4 C -0.08 -0.97 9.69 -39.61 -0.38 -1.35 16 5 C -0.15 -2.19 9.99 -39.44 -0.39 -2.59 16 6 C 0.14 2.27 6.68 -39.22 -0.26 2.00 16 7 O -0.30 -5.79 9.67 -39.29 -0.38 -6.17 16 8 C 0.06 1.24 4.19 36.00 0.15 1.39 16 9 C 0.50 11.86 7.65 -10.98 -0.08 11.77 16 10 O -0.55 -13.93 12.89 -14.30 -0.18 -14.12 16 11 N -0.38 -9.37 2.64 -58.98 -0.16 -9.53 16 12 C -0.38 -8.91 7.48 -14.94 -0.11 -9.02 16 13 H 0.09 2.06 7.66 -52.48 -0.40 1.66 16 14 C 0.06 1.29 4.03 -17.49 -0.07 1.22 16 15 N -0.84 -20.88 10.71 55.49 0.59 -20.29 16 16 Si 0.92 17.67 29.56 -169.99 -5.02 12.65 16 17 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 18 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 20 C 0.18 4.49 6.04 -83.69 -0.51 3.98 16 21 C -0.09 -2.15 7.72 -39.37 -0.30 -2.46 16 22 C -0.13 -2.69 10.04 -39.61 -0.40 -3.09 16 23 C -0.17 -3.38 10.04 -39.53 -0.40 -3.78 16 24 C -0.12 -2.60 10.04 -39.61 -0.40 -3.00 16 25 C -0.19 -4.58 9.05 -39.37 -0.36 -4.94 16 26 C -0.21 -3.08 9.07 -39.43 -0.36 -3.43 16 27 C -0.08 -0.97 9.69 -39.60 -0.38 -1.36 16 28 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.58 7.70 -51.93 -0.40 1.18 16 36 H 0.09 1.77 7.17 -51.93 -0.37 1.39 16 37 H 0.28 6.55 8.32 -40.82 -0.34 6.21 16 38 H 0.14 3.34 5.11 -52.49 -0.27 3.07 16 39 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.17 4.30 4.52 -56.32 -0.25 4.05 16 43 H 0.13 1.91 6.28 -52.48 -0.33 1.58 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -28.10 364.99 -10.05 -38.15 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.81 Total: 12.22 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -4.59 Total: -18.41 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.44 Total: -29.82 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.56 Total: -20.29 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.02 Total: 12.65 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.10 -10.05 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078296677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.755 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds