Wall clock time and date at job start Tue Mar 31 2020 14:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47041 * 2 1 4 4 C 1.38259 * 119.94600 * 90.00477 * 3 2 1 5 5 C 1.38145 * 120.05470 * 180.02562 * 4 3 2 6 6 C 1.38726 * 119.94730 * 359.97438 * 5 4 3 7 7 O 1.35900 * 120.05805 * 180.02562 * 6 5 4 8 8 C 1.42901 * 117.00130 * 184.99385 * 7 6 5 9 9 C 1.50698 * 109.47098 * 184.58638 * 8 7 6 10 10 O 1.21272 * 120.00385 * 4.97093 * 9 8 7 11 11 N 1.34784 * 119.99678 * 184.96389 * 9 8 7 12 12 C 1.37136 * 120.00408 * 4.31734 * 11 9 8 13 13 H 1.08006 * 120.00203 * 59.07162 * 12 11 9 14 14 C 1.38885 * 119.99856 * 239.07955 * 12 11 9 15 15 N 1.31414 * 120.00244 * 357.01482 * 14 12 11 16 16 Si 1.86802 * 120.00059 * 177.02296 * 14 12 11 17 17 H 1.48504 * 109.47348 * 59.98965 * 16 14 12 18 18 H 1.48497 * 109.47524 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46721 * 299.99501 * 16 14 12 20 20 C 1.39792 * 119.99941 * 184.31085 * 11 9 8 21 21 C 1.38953 * 120.07977 * 174.21485 * 20 11 9 22 22 C 1.38084 * 119.92411 * 179.97438 * 21 20 11 23 23 C 1.38313 * 120.07759 * 359.97438 * 22 21 20 24 24 C 1.38309 * 120.15375 * 0.03988 * 23 22 21 25 25 C 1.38085 * 120.07962 * 359.95974 * 24 23 22 26 26 C 1.38730 * 119.88772 * 0.27906 * 6 5 4 27 27 C 1.38148 * 119.94212 * 359.47310 * 26 6 5 28 28 H 1.09009 * 109.46863 * 300.00076 * 1 2 3 29 29 H 1.08996 * 109.47356 * 59.99904 * 1 2 3 30 30 H 1.08997 * 109.47208 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47232 * 239.99996 * 2 1 3 32 32 H 1.09000 * 109.47509 * 119.99628 * 2 1 3 33 33 H 1.07997 * 119.97257 * 359.97117 * 4 3 2 34 34 H 1.08000 * 120.02675 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47263 * 64.58623 * 8 7 6 36 36 H 1.09005 * 109.46964 * 304.58420 * 8 7 6 37 37 H 0.97000 * 120.00385 * 184.99781 * 15 14 12 38 38 H 1.07997 * 120.03703 * 359.70184 * 21 20 11 39 39 H 1.07996 * 119.96527 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.92297 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.96079 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.03974 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.03327 * 179.71788 * 26 6 5 44 44 H 1.07998 * 119.97060 * 180.23189 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0715 1.1980 5 6 2.7224 3.3741 1.2006 6 6 2.9539 4.0292 -0.0001 7 8 3.4069 5.3105 -0.0001 8 6 3.5185 5.9591 -1.2686 9 6 4.1379 7.3205 -1.0838 10 8 4.5352 7.6626 0.0097 11 7 4.2504 8.1578 -2.1341 12 6 3.7221 7.8073 -3.3501 13 1 2.6660 7.6002 -3.4407 14 6 4.5453 7.7186 -4.4652 15 7 5.8190 8.0272 -4.3680 16 14 3.8419 7.1609 -6.1034 17 1 2.7668 8.0948 -6.5243 18 1 4.9178 7.1517 -7.1268 19 1 3.2816 5.7929 -5.9614 20 6 4.9054 9.3835 -1.9837 21 6 5.1284 10.1943 -3.0899 22 6 5.7753 11.4047 -2.9376 23 6 6.2007 11.8106 -1.6857 24 6 5.9807 11.0060 -0.5825 25 6 5.3345 9.7943 -0.7274 26 6 2.7172 3.3760 -1.2008 27 6 2.2621 2.0716 -1.1981 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0816 1.5613 2.1325 34 1 2.9016 3.8821 2.1367 35 1 2.5277 6.0676 -1.7097 36 1 4.1466 5.3607 -1.9286 37 1 6.3780 8.0354 -5.1606 38 1 4.8000 9.8762 -4.0683 39 1 5.9493 12.0352 -3.7969 40 1 6.7060 12.7580 -1.5694 41 1 6.3146 11.3258 0.3936 42 1 5.1634 9.1664 0.1344 43 1 2.8923 3.8853 -2.1370 44 1 2.0812 1.5613 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078296677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:24 Heat of formation + Delta-G solvation = -14.915742 kcal Electronic energy + Delta-G solvation = -26661.301981 eV Core-core repulsion = 22930.132282 eV Total energy + Delta-G solvation = -3731.169699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.75297 -40.95076 -39.20145 -38.39669 -36.91001 -34.42903 -33.90462 -32.08634 -31.43959 -31.23101 -29.78110 -28.49354 -27.05094 -24.50155 -24.05090 -23.37183 -22.83148 -21.72967 -21.26617 -19.60794 -19.29816 -17.86965 -17.52756 -17.22884 -17.09489 -16.72153 -16.42949 -16.02958 -15.57641 -15.36624 -15.26527 -14.76645 -14.73437 -14.53327 -14.28004 -14.14178 -13.96972 -13.87357 -13.61550 -13.39108 -13.17733 -13.11419 -12.82235 -12.72209 -12.48875 -12.14972 -12.01682 -11.84089 -11.80182 -11.73459 -11.57369 -11.03191 -10.59603 -10.02949 -9.95212 -9.53673 -9.02740 -8.77497 -8.13054 -6.56895 0.39297 0.45209 0.63643 0.82112 1.43704 1.45177 1.55232 1.76948 1.86415 2.27270 2.78996 2.87487 3.01446 3.33496 3.75444 3.92672 3.94210 3.97056 4.14349 4.20656 4.31582 4.32338 4.39450 4.44259 4.55042 4.59559 4.61096 4.69446 4.85568 4.94403 5.01078 5.05420 5.13187 5.14030 5.19270 5.32400 5.36480 5.41760 5.43903 5.45671 5.71958 5.78895 5.85533 5.87148 5.91718 6.01904 6.19982 6.40304 6.59999 6.91787 7.29553 7.68137 8.59740 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.003300 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.034328 B = 8482.388786 C =10130.644513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.077 4.077 5 C -0.164 4.164 6 C 0.099 3.901 7 O -0.322 6.322 8 C 0.080 3.920 9 C 0.481 3.519 10 O -0.575 6.575 11 N -0.390 5.390 12 C -0.393 4.393 13 H 0.104 0.896 14 C 0.022 3.978 15 N -0.874 5.874 16 Si 0.985 3.015 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.255 1.255 20 C 0.145 3.855 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.160 4.160 24 C -0.124 4.124 25 C -0.218 4.218 26 C -0.217 4.217 27 C -0.081 4.081 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.277 0.723 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.130 0.870 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 -10.994 2.199 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.125 4.125 4 C -0.095 4.095 5 C -0.182 4.182 6 C 0.054 3.946 7 O -0.236 6.236 8 C 0.003 3.997 9 C 0.273 3.727 10 O -0.460 6.460 11 N -0.099 5.099 12 C -0.519 4.519 13 H 0.122 0.878 14 C -0.185 4.185 15 N -0.506 5.506 16 Si 0.807 3.193 17 H -0.186 1.186 18 H -0.207 1.207 19 H -0.179 1.179 20 C 0.050 3.950 21 C -0.130 4.130 22 C -0.147 4.147 23 C -0.179 4.179 24 C -0.143 4.143 25 C -0.237 4.237 26 C -0.235 4.235 27 C -0.099 4.099 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.173 0.827 43 H 0.148 0.852 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.937 -10.842 2.778 13.168 hybrid contribution 0.205 0.221 -1.173 1.211 sum -6.732 -10.622 1.605 12.677 Atomic orbital electron populations 1.21757 0.94405 1.02351 1.01823 1.20510 0.96326 0.90710 1.03782 1.20166 1.01713 0.98067 0.92506 1.21111 0.96688 0.92465 0.99193 1.20654 1.05405 0.96304 0.95857 1.19467 0.95980 0.83389 0.95722 1.86057 1.81111 1.24937 1.31478 1.22072 1.02643 0.90834 0.84165 1.20961 0.80697 0.86837 0.84241 1.90208 1.52198 1.76116 1.27430 1.41040 1.47051 1.11972 1.09873 1.19713 0.94698 1.52634 0.84890 0.87814 1.26480 0.94669 0.93731 1.03608 1.70152 1.06333 1.42202 1.31897 0.85109 0.78094 0.79966 0.76130 1.18623 1.20743 1.17926 1.18680 0.95908 0.86349 0.94090 1.21118 1.00283 0.93595 0.97972 1.21173 0.99473 0.95909 0.98119 1.21241 1.03259 1.00955 0.92429 1.21211 0.99387 0.94148 0.99505 1.22787 1.02986 0.99403 0.98546 1.21489 1.07305 0.97836 0.96920 1.21107 0.96719 0.92930 0.99136 0.92890 0.93230 0.91004 0.90304 0.89860 0.82774 0.85235 0.87883 0.88819 0.91283 0.85809 0.84784 0.83949 0.84819 0.82724 0.85191 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.08 -1.09 6.06 29.85 0.18 -0.91 16 3 C -0.12 -2.62 5.13 -19.85 -0.10 -2.72 16 4 C -0.08 -1.72 9.69 22.25 0.22 -1.50 16 5 C -0.16 -4.75 9.99 22.36 0.22 -4.53 16 6 C 0.10 3.40 6.68 22.50 0.15 3.55 16 7 O -0.32 -13.37 9.67 -73.43 -0.71 -14.08 16 8 C 0.08 3.34 4.19 71.24 0.30 3.64 16 9 C 0.48 24.25 7.65 87.66 0.67 24.92 16 10 O -0.57 -31.39 12.89 15.98 0.21 -31.19 16 11 N -0.39 -20.12 2.64 -458.90 -1.21 -21.33 16 12 C -0.39 -18.95 7.48 84.02 0.63 -18.33 16 13 H 0.10 4.64 7.66 -2.91 -0.02 4.62 16 14 C 0.02 1.03 4.03 84.91 0.34 1.38 16 15 N -0.87 -44.54 10.71 21.65 0.23 -44.31 16 16 Si 0.99 36.09 29.56 68.60 2.03 38.12 16 17 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 18 H -0.28 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 20 C 0.15 7.56 6.04 38.22 0.23 7.80 16 21 C -0.11 -5.27 7.72 22.40 0.17 -5.10 16 22 C -0.13 -5.22 10.04 22.25 0.22 -4.99 16 23 C -0.16 -6.01 10.04 22.30 0.22 -5.79 16 24 C -0.12 -5.12 10.04 22.25 0.22 -4.90 16 25 C -0.22 -10.81 9.05 22.41 0.20 -10.61 16 26 C -0.22 -6.46 9.07 22.37 0.20 -6.26 16 27 C -0.08 -1.93 9.69 22.26 0.22 -1.71 16 28 H 0.05 0.72 8.14 -2.38 -0.02 0.71 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 32 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 33 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 35 H 0.10 3.85 7.70 -2.39 -0.02 3.83 16 36 H 0.09 3.78 7.17 -2.38 -0.02 3.76 16 37 H 0.28 13.36 8.32 -92.71 -0.77 12.59 16 38 H 0.12 6.22 5.11 -2.91 -0.01 6.20 16 39 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 40 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 42 H 0.16 8.24 4.52 -63.52 -0.29 7.95 16 43 H 0.13 3.82 6.28 -2.91 -0.02 3.80 16 44 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -63.97 364.99 6.29 -57.67 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: 0.73 Total: 42.38 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 5.02 Total: -27.27 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.98 Total: -65.64 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -0.50 Total: -45.27 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -63.97 6.29 -57.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078296677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.758 kcal (2) G-P(sol) polarization free energy of solvation -63.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds