Wall clock time and date at job start Tue Mar 31 2020 14:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00024 * 2 1 4 4 C 1.53007 * 109.47299 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46892 * 65.00283 * 4 3 2 6 6 C 1.46505 * 119.99668 * 270.00187 * 5 4 3 7 7 C 1.50698 * 109.47114 * 269.99642 * 6 5 4 8 8 H 1.08001 * 119.99897 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00205 * 180.02562 * 7 6 5 10 10 N 1.31522 * 120.00100 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00134 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47249 * 90.00101 * 11 9 7 13 13 H 1.48497 * 109.47490 * 210.00336 * 11 9 7 14 14 H 1.48504 * 109.47084 * 330.00387 * 11 9 7 15 15 C 1.34773 * 120.00182 * 89.99983 * 5 4 3 16 16 O 1.21279 * 120.00421 * 0.02562 * 15 5 4 17 17 C 1.50706 * 120.00088 * 179.97438 * 15 5 4 18 18 C 1.53001 * 109.47033 * 179.97438 * 17 15 5 19 19 C 1.53003 * 109.46880 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.46797 * 180.02562 * 19 18 17 21 21 C 1.33390 * 125.20296 * 90.00752 * 20 19 18 22 22 C 1.38425 * 114.92123 * 179.97438 * 21 20 19 23 23 C 1.33383 * 114.92174 * 359.97438 * 22 21 20 24 24 C 1.50703 * 125.20415 * 180.02562 * 23 22 21 25 25 S 1.75887 * 109.59638 * 359.97438 * 23 22 21 26 26 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46811 * 299.99830 * 1 2 3 28 28 H 1.08998 * 109.46821 * 59.99989 * 1 2 3 29 29 H 1.08998 * 109.47163 * 60.00127 * 3 2 1 30 30 H 1.09000 * 109.47303 * 300.00007 * 3 2 1 31 31 H 1.08997 * 109.46948 * 305.00671 * 4 3 2 32 32 H 1.08999 * 109.47260 * 185.00111 * 4 3 2 33 33 H 1.08993 * 109.47631 * 30.00427 * 6 5 4 34 34 H 1.09007 * 109.46853 * 150.00328 * 6 5 4 35 35 H 0.96997 * 120.00183 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.46918 * 60.00187 * 17 15 5 37 37 H 1.08999 * 109.47162 * 300.00484 * 17 15 5 38 38 H 1.08998 * 109.47021 * 60.00367 * 18 17 15 39 39 H 1.09002 * 109.46942 * 300.00083 * 18 17 15 40 40 H 1.08998 * 109.46869 * 60.00427 * 19 18 17 41 41 H 1.08994 * 109.47631 * 300.00227 * 19 18 17 42 42 H 1.07997 * 122.53530 * 0.23800 * 21 20 19 43 43 H 1.08001 * 122.53542 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46776 * 89.99460 * 24 23 22 45 45 H 1.08999 * 109.46856 * 209.99477 * 24 23 22 46 46 H 1.09002 * 109.46917 * 329.99965 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5017 -1.2982 -0.9413 8 1 6.2201 -0.5462 -0.6499 9 6 5.8613 -2.6291 -0.9484 10 7 7.0791 -2.9831 -0.5996 11 14 4.6187 -3.9297 -1.4518 12 1 4.7042 -4.1553 -2.9171 13 1 4.9127 -5.1981 -0.7377 14 1 3.2510 -3.4698 -1.1009 15 6 4.2633 1.3330 -2.3200 16 8 4.1565 2.5388 -2.2459 17 6 4.7178 0.6946 -3.6073 18 6 4.9741 1.7816 -4.6530 19 6 5.4360 1.1335 -5.9597 20 6 5.6891 2.2043 -6.9895 21 6 6.8544 2.8233 -7.1848 22 6 6.8483 3.7742 -8.1907 23 6 5.6783 3.9271 -8.8126 24 6 5.4123 4.8935 -9.9380 25 16 4.4937 2.8272 -8.1194 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5684 0.8426 32 1 3.9785 2.1765 0.0902 33 1 3.3858 -1.3632 -0.6715 34 1 3.9139 -1.2122 -2.3646 35 1 7.3320 -3.9196 -0.6042 36 1 3.9444 0.0174 -3.9698 37 1 5.6367 0.1355 -3.4310 38 1 5.7473 2.4591 -4.2907 39 1 4.0548 2.3403 -4.8291 40 1 4.6631 0.4558 -6.3221 41 1 6.3553 0.5751 -5.7833 42 1 7.7369 2.5965 -6.6050 43 1 7.7249 4.3482 -8.4526 44 1 5.6167 4.4061 -10.8913 45 1 4.3694 5.2087 -9.9073 46 1 6.0586 5.7645 -9.8293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079541567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:02 Heat of formation + Delta-G solvation = -85.070491 kcal Electronic energy + Delta-G solvation = -25114.332050 eV Core-core repulsion = 21515.564165 eV Total energy + Delta-G solvation = -3598.767886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92830 -39.07670 -38.73335 -36.71297 -35.92008 -34.55087 -32.89999 -31.62306 -29.81634 -29.11905 -27.17787 -26.06851 -24.41141 -24.25548 -23.50295 -22.32738 -19.95507 -19.61442 -19.07232 -18.15836 -17.75395 -17.39602 -17.03278 -16.82530 -16.30700 -16.21759 -15.88297 -15.75024 -15.01944 -14.91815 -14.74381 -14.36998 -14.14969 -13.89784 -13.80422 -13.67249 -13.41533 -13.36027 -13.10085 -12.87055 -12.74616 -12.68214 -12.47428 -12.43257 -12.29596 -12.17647 -12.02501 -11.91751 -11.72367 -11.64866 -11.51911 -10.81939 -10.73398 -10.52861 -9.41457 -9.38314 -9.31541 -8.27413 -6.33830 0.07473 0.69796 1.08651 1.41085 1.44204 1.55053 1.74784 1.83335 2.30599 2.37623 2.90400 3.07523 3.67658 3.79449 4.00525 4.03389 4.12565 4.19237 4.32137 4.36471 4.41287 4.44054 4.52494 4.54438 4.57152 4.62890 4.72127 4.73905 4.75646 4.80939 4.83204 4.84221 4.90532 4.93389 5.05422 5.12127 5.14429 5.31508 5.34632 5.42403 5.49210 5.66254 5.71708 6.19963 6.27277 6.64933 6.72614 7.26172 7.37078 8.88854 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011583 B = 0.003084 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.659274 B = 9076.112660 C =10451.615973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.059 3.941 4 C 0.113 3.887 5 N -0.591 5.591 6 C 0.225 3.775 7 C -0.538 4.538 8 H 0.030 0.970 9 C 0.021 3.979 10 N -0.943 5.943 11 Si 0.938 3.062 12 H -0.258 1.258 13 H -0.287 1.287 14 H -0.243 1.243 15 C 0.511 3.489 16 O -0.595 6.595 17 C -0.134 4.134 18 C -0.080 4.080 19 C -0.047 4.047 20 C -0.182 4.182 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.187 4.187 24 C -0.081 4.081 25 S 0.079 5.921 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.268 0.732 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.143 0.857 43 H 0.156 0.844 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 10.237 -13.880 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.018 4.018 4 C -0.010 4.010 5 N -0.320 5.320 6 C 0.103 3.897 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.178 4.178 10 N -0.583 5.583 11 Si 0.760 3.240 12 H -0.182 1.182 13 H -0.212 1.212 14 H -0.167 1.167 15 C 0.301 3.699 16 O -0.478 6.478 17 C -0.173 4.173 18 C -0.119 4.119 19 C -0.086 4.086 20 C -0.299 4.299 21 C -0.178 4.178 22 C -0.180 4.180 23 C -0.304 4.304 24 C -0.139 4.139 25 S 0.343 5.657 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.161 0.839 43 H 0.174 0.826 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.906 10.223 -14.081 20.535 hybrid contribution 1.483 -0.343 0.710 1.680 sum -9.422 9.880 -13.370 19.109 Atomic orbital electron populations 1.22896 0.79840 1.03532 1.00687 1.87952 1.21263 1.28175 1.95514 1.22886 0.93135 0.84819 1.01004 1.21492 0.93144 0.99328 0.87005 1.47932 1.64246 1.08394 1.11440 1.19577 0.95343 0.76693 0.98115 1.21545 0.97140 0.92887 1.46102 0.95187 1.25735 0.96949 1.00726 0.94393 1.70054 1.20648 1.18119 1.49470 0.85855 0.80497 0.78104 0.79521 1.18204 1.21245 1.16657 1.21026 0.75964 0.86512 0.86428 1.90566 1.56498 1.15493 1.85220 1.21661 1.03985 0.99671 0.92005 1.21169 1.01433 0.96522 0.92752 1.20161 1.03267 0.94287 0.90861 1.24537 0.97074 1.05065 1.03195 1.20360 0.98599 0.98400 1.00462 1.20290 0.98951 1.01022 0.97708 1.24871 0.96401 1.04328 1.04797 1.20430 1.03159 0.96458 0.93884 1.84172 1.15187 1.35551 1.30789 0.88909 0.92605 0.93820 0.90131 0.93838 0.90346 0.89339 0.93603 0.93866 0.92327 0.87665 0.88784 0.92784 0.92105 0.89616 0.89320 0.83916 0.82645 0.89637 0.90878 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.84 16 2 O -0.41 -13.13 9.53 -148.98 -1.42 -14.55 16 3 C 0.06 1.79 6.28 71.98 0.45 2.24 16 4 C 0.11 4.17 5.81 86.38 0.50 4.67 16 5 N -0.59 -24.55 2.42 -826.14 -2.00 -26.55 16 6 C 0.22 10.01 3.85 85.63 0.33 10.34 16 7 C -0.54 -29.10 9.83 25.60 0.25 -28.84 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.02 1.13 5.47 84.65 0.46 1.60 16 10 N -0.94 -56.37 13.96 21.45 0.30 -56.07 16 11 Si 0.94 40.74 27.47 68.60 1.88 42.62 16 12 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 13 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 15 C 0.51 20.87 7.67 87.66 0.67 21.55 16 16 O -0.59 -26.25 15.56 -3.02 -0.05 -26.30 16 17 C -0.13 -4.63 4.25 29.85 0.13 -4.51 16 18 C -0.08 -2.47 4.49 30.60 0.14 -2.33 16 19 C -0.05 -1.20 5.71 29.85 0.17 -1.02 16 20 C -0.18 -4.61 5.76 24.59 0.14 -4.47 16 21 C -0.15 -3.58 10.05 21.22 0.21 -3.37 16 22 C -0.15 -3.15 10.05 21.22 0.21 -2.94 16 23 C -0.19 -3.74 6.51 24.59 0.16 -3.58 16 24 C -0.08 -1.05 10.38 71.24 0.74 -0.31 16 25 S 0.08 1.80 23.31 -56.49 -1.32 0.48 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 2.98 8.07 -2.39 -0.02 2.96 16 32 H 0.09 3.21 7.42 -2.39 -0.02 3.19 16 33 H 0.05 2.08 6.17 -2.39 -0.01 2.06 16 34 H 0.04 1.80 5.87 -2.38 -0.01 1.78 16 35 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.11 3.22 7.40 -2.39 -0.02 3.20 16 37 H 0.09 3.56 8.00 -2.39 -0.02 3.54 16 38 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 39 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 43 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -68.39 393.17 4.11 -64.28 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.89 Total: 25.23 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 5.82 Total: -9.14 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.70 Total: -82.62 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.47 Total: -40.85 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.88 Total: 42.62 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.32 Total: 0.48 kcal Total: -68.39 4.11 -64.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079541567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.791 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds