Wall clock time and date at job start Tue Mar 31 2020 14:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46983 * 2 1 4 4 C 1.53007 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47150 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.46812 * 55.00370 * 6 5 4 8 8 C 1.52999 * 109.46835 * 174.99882 * 6 5 4 9 9 N 1.46500 * 109.47143 * 294.99838 * 6 5 4 10 10 S 1.65592 * 119.99807 * 145.00127 * 9 6 5 11 11 O 1.42103 * 106.40462 * 178.54047 * 10 9 6 12 12 O 1.42104 * 106.40330 * 311.45907 * 10 9 6 13 13 C 1.76197 * 107.22102 * 64.99889 * 10 9 6 14 14 C 1.38634 * 119.75040 * 269.73054 * 13 10 9 15 15 C 1.37618 * 120.24427 * 179.71861 * 14 13 10 16 16 C 1.40711 * 119.75016 * 0.57076 * 15 14 13 17 17 C 1.41394 * 120.24833 * 179.68040 * 16 15 14 18 18 H 1.08000 * 120.00129 * 155.30820 * 17 16 15 19 19 C 1.39942 * 119.99954 * 335.31106 * 17 16 15 20 20 N 1.30819 * 120.00095 * 342.22988 * 19 17 16 21 21 Si 1.86800 * 120.00021 * 162.22833 * 19 17 16 22 22 H 1.48510 * 109.47062 * 94.66826 * 21 19 17 23 23 H 1.48492 * 109.47340 * 214.66224 * 21 19 17 24 24 H 1.48495 * 109.47533 * 334.66735 * 21 19 17 25 25 C 1.40717 * 119.50982 * 359.70106 * 16 15 14 26 26 C 1.37622 * 119.74483 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47040 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47052 * 299.99957 * 1 2 3 29 29 H 1.09001 * 109.47236 * 59.99634 * 1 2 3 30 30 H 1.09001 * 109.47278 * 240.00767 * 2 1 3 31 31 H 1.08991 * 109.47250 * 120.00368 * 2 1 3 32 32 H 1.09001 * 109.46936 * 60.00574 * 3 2 1 33 33 H 1.09001 * 109.47433 * 300.00245 * 3 2 1 34 34 H 1.08998 * 109.46946 * 59.99981 * 4 3 2 35 35 H 1.09000 * 109.46880 * 299.99943 * 4 3 2 36 36 H 1.09007 * 109.47027 * 59.99461 * 5 4 3 37 37 H 1.09001 * 109.47082 * 300.00135 * 5 4 3 38 38 H 1.09000 * 109.47370 * 60.00032 * 8 6 5 39 39 H 1.08999 * 109.47209 * 299.99876 * 8 6 5 40 40 H 1.09003 * 109.47056 * 179.97438 * 8 6 5 41 41 H 0.97001 * 119.99930 * 325.00105 * 9 6 5 42 42 H 1.07996 * 119.87512 * 359.97438 * 14 13 10 43 43 H 1.08000 * 120.12468 * 180.27492 * 15 14 13 44 44 H 0.97001 * 120.00702 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.12882 * 179.97438 * 25 16 15 46 46 H 1.08000 * 119.87893 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0013 6 6 5.6100 2.8851 0.0013 7 1 5.9733 2.2961 -0.8408 8 6 6.1199 4.3222 -0.1238 9 7 6.0983 2.3008 1.2528 10 16 7.4819 1.3910 1.2574 11 8 7.7032 1.0038 2.6066 12 8 7.3527 0.4588 0.1926 13 6 8.8119 2.4618 0.8225 14 6 9.1660 2.6131 -0.5092 15 6 10.1993 3.4513 -0.8608 16 6 10.9051 4.1467 0.1384 17 6 11.9729 5.0053 -0.2104 18 1 12.2497 5.8170 0.4460 19 6 12.6711 4.8034 -1.4063 20 7 12.5888 3.6542 -2.0258 21 14 13.7206 6.1750 -2.1181 22 1 15.1271 6.0039 -1.6732 23 1 13.6612 6.1252 -3.6010 24 1 13.2082 7.4864 -1.6460 25 6 10.5405 3.9810 1.4873 26 6 9.5001 3.1420 1.8154 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8909 36 1 3.7162 3.3987 0.8913 37 1 3.7170 3.3992 -0.8887 38 1 5.7566 4.9113 0.7182 39 1 5.7566 4.7568 -1.0550 40 1 7.2100 4.3222 -0.1234 41 1 5.6112 2.4470 2.0788 42 1 8.6262 2.0744 -1.2739 43 1 10.4707 3.5711 -1.8992 44 1 13.0730 3.5140 -2.8546 45 1 11.0757 4.5095 2.2624 46 1 9.2188 3.0129 2.8501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081298790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:26 Heat of formation + Delta-G solvation = -102.958472 kcal Electronic energy + Delta-G solvation = -25626.538147 eV Core-core repulsion = 22026.994581 eV Total energy + Delta-G solvation = -3599.543567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -37.70992 -37.49255 -36.40752 -35.33395 -35.08613 -34.03645 -31.59351 -30.28705 -29.53786 -29.41803 -26.41550 -25.78457 -22.52838 -21.51565 -21.17807 -21.03119 -20.77367 -18.97573 -17.61784 -17.16931 -16.52452 -16.00215 -15.51236 -15.49011 -14.55787 -14.21888 -14.12952 -13.98648 -13.67451 -13.41950 -13.22584 -13.06376 -12.75588 -12.47343 -12.25158 -12.14182 -12.01390 -11.78408 -11.64631 -11.44489 -11.37730 -11.29433 -11.24977 -11.19782 -11.16165 -10.89954 -10.88308 -10.82149 -10.54268 -10.43958 -10.35074 -9.75502 -9.63099 -9.47323 -9.01580 -7.93703 -7.69643 -7.13676 -4.79545 1.30231 2.26507 2.87018 2.88942 2.92654 2.95380 3.65878 3.76886 4.24967 4.50744 4.60185 4.78756 4.89416 5.04385 5.11101 5.12842 5.26951 5.37768 5.39319 5.53591 5.57722 5.60601 5.68732 5.76106 5.86246 5.91181 5.92167 5.94351 6.08489 6.10307 6.11644 6.13031 6.22469 6.36659 6.51168 6.60272 6.68598 6.71990 6.92081 7.05558 7.33332 7.38681 7.43606 7.64224 7.77211 7.97599 8.32247 8.51838 8.65371 9.77848 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002844 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.190500 B = 9842.414510 C =10378.557490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.124 4.124 5 C -0.120 4.120 6 C 0.152 3.848 7 H 0.089 0.911 8 C -0.177 4.177 9 N -1.120 6.120 10 S 2.692 3.308 11 O -0.989 6.989 12 O -0.984 6.984 13 C -0.785 4.785 14 C -0.014 4.014 15 C -0.183 4.183 16 C 0.140 3.860 17 C -0.436 4.436 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.765 5.765 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.239 4.239 26 C 0.003 3.997 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.408 0.592 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.289 0.711 45 H 0.099 0.901 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.148 0.709 0.196 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.156 4.156 4 C -0.162 4.162 5 C -0.159 4.159 6 C 0.045 3.955 7 H 0.107 0.893 8 C -0.236 4.236 9 N -0.876 5.876 10 S 2.790 3.210 11 O -0.980 6.980 12 O -0.974 6.974 13 C -0.881 4.881 14 C -0.035 4.035 15 C -0.203 4.203 16 C 0.136 3.864 17 C -0.464 4.464 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.387 5.387 21 Si 0.739 3.261 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.180 1.180 25 C -0.260 4.260 26 C -0.017 4.017 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.241 0.759 42 H 0.120 0.880 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.961 -0.402 0.006 14.967 hybrid contribution 0.753 1.265 -0.189 1.484 sum -14.208 0.863 -0.183 14.235 Atomic orbital electron populations 1.21777 0.96168 1.01395 1.01599 1.21560 0.95528 0.97261 1.02228 1.21628 0.95750 0.96513 1.01751 1.21646 0.94715 0.96882 1.02947 1.21867 0.94371 0.97157 1.02511 1.20717 0.94177 0.94593 0.86056 0.89281 1.22394 1.03755 0.95866 1.01568 1.55803 1.44177 1.72080 1.15509 1.01236 0.73042 0.73965 0.72728 1.93486 1.85676 1.82177 1.36626 1.93485 1.86593 1.60045 1.57304 1.29137 1.26064 1.31443 1.01481 1.20226 0.95771 0.94783 0.92684 1.21325 0.97323 1.02055 0.99634 1.17841 0.89492 0.88066 0.90962 1.19921 1.11531 1.11690 1.03215 0.89514 1.26133 0.96693 0.96170 0.96005 1.69822 1.32326 1.21877 1.14712 0.86162 0.79858 0.81401 0.78707 1.19126 1.19595 1.18029 1.21016 1.02936 1.06243 0.95791 1.20146 0.93317 0.92327 0.95899 0.92965 0.92903 0.92892 0.91960 0.92017 0.92234 0.92170 0.91550 0.91682 0.91552 0.90929 0.92471 0.92086 0.90349 0.75938 0.88000 0.86085 0.89967 0.88287 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.05 5.21 -26.73 -0.14 -1.19 16 4 C -0.12 -1.32 5.10 -26.73 -0.14 -1.46 16 5 C -0.12 -1.23 4.81 -26.73 -0.13 -1.36 16 6 C 0.15 1.99 2.91 -67.93 -0.20 1.79 16 7 H 0.09 1.27 7.50 -51.93 -0.39 0.88 16 8 C -0.18 -2.33 9.52 37.16 0.35 -1.98 16 9 N -1.12 -16.09 4.92 -4.89 -0.02 -16.12 16 10 S 2.69 51.51 5.71 -107.50 -0.61 50.90 16 11 O -0.99 -21.10 17.26 -57.17 -0.99 -22.08 16 12 O -0.98 -20.99 16.59 -57.17 -0.95 -21.94 16 13 C -0.79 -16.95 5.08 -39.29 -0.20 -17.15 16 14 C -0.01 -0.32 8.57 -39.66 -0.34 -0.66 16 15 C -0.18 -4.48 8.70 -38.87 -0.34 -4.82 16 16 C 0.14 3.50 5.57 -106.83 -0.60 2.90 16 17 C -0.44 -10.60 9.05 -37.74 -0.34 -10.94 16 18 H 0.09 1.99 7.91 -52.49 -0.41 1.58 16 19 C 0.07 1.66 5.14 -17.35 -0.09 1.57 16 20 N -0.77 -18.27 10.97 55.55 0.61 -17.66 16 21 Si 0.92 16.91 29.59 -169.99 -5.03 11.88 16 22 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 24 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 25 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 26 C 0.00 0.07 9.49 -39.66 -0.38 -0.30 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 36 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.26 6.18 -51.93 -0.32 0.94 16 41 H 0.41 4.90 8.84 -34.47 -0.30 4.59 16 42 H 0.10 2.14 7.59 -52.49 -0.40 1.74 16 43 H 0.12 3.01 6.18 -52.49 -0.32 2.68 16 44 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 45 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 46 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -29.08 384.77 -11.48 -40.57 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -7.58 Total: 10.31 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: -2.70 Total: -41.65 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.59 Total: -33.78 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.94 Total: -44.02 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 51.51 SS G_CDS: -0.61 Total: 50.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.08 -11.48 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.393 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds