Wall clock time and date at job start Tue Mar 31 2020 14:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46983 * 2 1 4 4 C 1.53007 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47150 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.46812 * 55.00370 * 6 5 4 8 8 C 1.52999 * 109.46835 * 174.99882 * 6 5 4 9 9 N 1.46500 * 109.47143 * 294.99838 * 6 5 4 10 10 S 1.65592 * 119.99807 * 145.00127 * 9 6 5 11 11 O 1.42103 * 106.40462 * 178.54047 * 10 9 6 12 12 O 1.42104 * 106.40330 * 311.45907 * 10 9 6 13 13 C 1.76197 * 107.22102 * 64.99889 * 10 9 6 14 14 C 1.38634 * 119.75040 * 269.73054 * 13 10 9 15 15 C 1.37618 * 120.24427 * 179.71861 * 14 13 10 16 16 C 1.40711 * 119.75016 * 0.57076 * 15 14 13 17 17 C 1.41394 * 120.24833 * 179.68040 * 16 15 14 18 18 H 1.08000 * 120.00129 * 155.30820 * 17 16 15 19 19 C 1.39942 * 119.99954 * 335.31106 * 17 16 15 20 20 N 1.30819 * 120.00095 * 342.22988 * 19 17 16 21 21 Si 1.86800 * 120.00021 * 162.22833 * 19 17 16 22 22 H 1.48510 * 109.47062 * 94.66826 * 21 19 17 23 23 H 1.48492 * 109.47340 * 214.66224 * 21 19 17 24 24 H 1.48495 * 109.47533 * 334.66735 * 21 19 17 25 25 C 1.40717 * 119.50982 * 359.70106 * 16 15 14 26 26 C 1.37622 * 119.74483 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47040 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47052 * 299.99957 * 1 2 3 29 29 H 1.09001 * 109.47236 * 59.99634 * 1 2 3 30 30 H 1.09001 * 109.47278 * 240.00767 * 2 1 3 31 31 H 1.08991 * 109.47250 * 120.00368 * 2 1 3 32 32 H 1.09001 * 109.46936 * 60.00574 * 3 2 1 33 33 H 1.09001 * 109.47433 * 300.00245 * 3 2 1 34 34 H 1.08998 * 109.46946 * 59.99981 * 4 3 2 35 35 H 1.09000 * 109.46880 * 299.99943 * 4 3 2 36 36 H 1.09007 * 109.47027 * 59.99461 * 5 4 3 37 37 H 1.09001 * 109.47082 * 300.00135 * 5 4 3 38 38 H 1.09000 * 109.47370 * 60.00032 * 8 6 5 39 39 H 1.08999 * 109.47209 * 299.99876 * 8 6 5 40 40 H 1.09003 * 109.47056 * 179.97438 * 8 6 5 41 41 H 0.97001 * 119.99930 * 325.00105 * 9 6 5 42 42 H 1.07996 * 119.87512 * 359.97438 * 14 13 10 43 43 H 1.08000 * 120.12468 * 180.27492 * 15 14 13 44 44 H 0.97001 * 120.00702 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.12882 * 179.97438 * 25 16 15 46 46 H 1.08000 * 119.87893 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0013 6 6 5.6100 2.8851 0.0013 7 1 5.9733 2.2961 -0.8408 8 6 6.1199 4.3222 -0.1238 9 7 6.0983 2.3008 1.2528 10 16 7.4819 1.3910 1.2574 11 8 7.7032 1.0038 2.6066 12 8 7.3527 0.4588 0.1926 13 6 8.8119 2.4618 0.8225 14 6 9.1660 2.6131 -0.5092 15 6 10.1993 3.4513 -0.8608 16 6 10.9051 4.1467 0.1384 17 6 11.9729 5.0053 -0.2104 18 1 12.2497 5.8170 0.4460 19 6 12.6711 4.8034 -1.4063 20 7 12.5888 3.6542 -2.0258 21 14 13.7206 6.1750 -2.1181 22 1 15.1271 6.0039 -1.6732 23 1 13.6612 6.1252 -3.6010 24 1 13.2082 7.4864 -1.6460 25 6 10.5405 3.9810 1.4873 26 6 9.5001 3.1420 1.8154 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8909 36 1 3.7162 3.3987 0.8913 37 1 3.7170 3.3992 -0.8887 38 1 5.7566 4.9113 0.7182 39 1 5.7566 4.7568 -1.0550 40 1 7.2100 4.3222 -0.1234 41 1 5.6112 2.4470 2.0788 42 1 8.6262 2.0744 -1.2739 43 1 10.4707 3.5711 -1.8992 44 1 13.0730 3.5140 -2.8546 45 1 11.0757 4.5095 2.2624 46 1 9.2188 3.0129 2.8501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081298790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:25 Heat of formation + Delta-G solvation = -119.235981 kcal Electronic energy + Delta-G solvation = -25627.243993 eV Core-core repulsion = 22026.994581 eV Total energy + Delta-G solvation = -3600.249412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.39801 -38.64414 -38.01192 -36.76618 -36.17946 -35.78691 -32.49546 -32.07094 -31.28096 -30.57093 -27.62606 -27.15370 -23.38819 -23.28932 -22.94010 -21.85742 -21.70814 -20.46099 -19.41255 -18.71993 -18.13389 -17.19759 -17.10815 -16.47523 -15.98640 -15.80488 -15.21443 -15.10322 -14.94026 -14.87609 -14.47231 -14.12370 -14.01954 -13.94539 -13.79651 -13.50577 -13.23649 -13.10651 -13.01745 -12.93773 -12.85857 -12.77586 -12.56927 -12.45998 -12.39646 -12.07351 -11.97253 -11.69977 -11.64672 -11.53772 -11.35100 -11.29375 -11.27534 -11.15527 -10.30438 -9.74464 -9.52571 -8.86205 -6.63516 -0.26694 0.50557 1.07492 1.35779 1.41916 1.52724 2.11450 2.28115 2.55626 2.96258 3.54509 3.62288 3.70894 4.06685 4.09952 4.21867 4.30403 4.32370 4.35306 4.36866 4.52692 4.58236 4.76489 4.84979 4.85795 4.88118 4.95621 4.97948 5.02563 5.11337 5.11696 5.14773 5.16655 5.25717 5.29884 5.39764 5.42862 5.50796 5.53984 5.56686 5.59829 5.61287 5.78513 5.94543 6.17050 6.29078 6.50626 6.69908 6.82588 8.09029 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002844 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.190500 B = 9842.414510 C =10378.557490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.113 4.113 4 C -0.128 4.128 5 C -0.111 4.111 6 C 0.146 3.854 7 H 0.075 0.925 8 C -0.175 4.175 9 N -1.101 6.101 10 S 2.720 3.280 11 O -1.008 7.008 12 O -1.005 7.005 13 C -0.790 4.790 14 C -0.014 4.014 15 C -0.205 4.205 16 C 0.113 3.887 17 C -0.467 4.467 18 H 0.091 0.909 19 C 0.034 3.966 20 N -0.800 5.800 21 Si 0.991 3.009 22 H -0.261 1.261 23 H -0.263 1.263 24 H -0.253 1.253 25 C -0.257 4.257 26 C -0.001 4.001 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.423 0.577 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.298 0.702 45 H 0.109 0.891 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.750 1.737 0.270 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.151 4.151 4 C -0.165 4.165 5 C -0.150 4.150 6 C 0.040 3.960 7 H 0.093 0.907 8 C -0.234 4.234 9 N -0.862 5.862 10 S 2.816 3.184 11 O -0.998 6.998 12 O -0.995 6.995 13 C -0.883 4.883 14 C -0.034 4.034 15 C -0.225 4.225 16 C 0.109 3.891 17 C -0.494 4.494 18 H 0.109 0.891 19 C -0.185 4.185 20 N -0.423 5.423 21 Si 0.810 3.190 22 H -0.185 1.185 23 H -0.187 1.187 24 H -0.176 1.176 25 C -0.277 4.277 26 C -0.021 4.021 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.259 0.741 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.549 0.632 0.095 16.562 hybrid contribution 1.121 0.859 -0.174 1.423 sum -15.429 1.491 -0.079 15.501 Atomic orbital electron populations 1.21758 0.95081 1.01800 1.02089 1.21590 0.96530 0.97234 1.01632 1.21583 0.94228 0.96658 1.02614 1.21666 0.96144 0.96920 1.01797 1.21836 0.91621 0.97254 1.04332 1.20920 0.96358 0.94114 0.84639 0.90671 1.22365 1.01559 0.96196 1.03279 1.55347 1.42241 1.71599 1.17063 1.00367 0.73028 0.73384 0.71646 1.93454 1.86295 1.82631 1.37437 1.93461 1.86938 1.60952 1.58124 1.29583 1.27143 1.30710 1.00909 1.20361 0.95171 0.94219 0.93613 1.21323 0.98467 1.03543 0.99184 1.18181 0.90306 0.88819 0.91763 1.20202 1.12231 1.12237 1.04701 0.89082 1.27018 0.97541 0.98299 0.95664 1.69861 1.33374 1.23659 1.15384 0.85053 0.77924 0.77982 0.78057 1.18510 1.18724 1.17643 1.21237 1.03739 1.07076 0.95633 1.20415 0.92841 0.91794 0.97032 0.92682 0.92406 0.92379 0.92603 0.92672 0.91311 0.91270 0.92861 0.92807 0.89754 0.89015 0.91022 0.90236 0.93679 0.74055 0.87027 0.87262 0.89106 0.87261 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.13 -2.12 5.93 30.59 0.18 -1.94 16 3 C -0.11 -1.75 5.21 30.60 0.16 -1.59 16 4 C -0.13 -2.48 5.10 30.60 0.16 -2.33 16 5 C -0.11 -1.97 4.81 30.59 0.15 -1.82 16 6 C 0.15 3.58 2.91 44.99 0.13 3.71 16 7 H 0.08 2.08 7.50 -2.39 -0.02 2.06 16 8 C -0.18 -4.34 9.52 71.98 0.69 -3.66 16 9 N -1.10 -29.93 4.92 -169.40 -0.83 -30.76 16 10 S 2.72 102.24 5.71 -56.49 -0.32 101.92 16 11 O -1.01 -41.89 17.26 -128.00 -2.21 -44.10 16 12 O -1.00 -42.52 16.59 -128.00 -2.12 -44.64 16 13 C -0.79 -34.25 5.08 22.46 0.11 -34.13 16 14 C -0.01 -0.63 8.57 22.22 0.19 -0.44 16 15 C -0.20 -10.41 8.70 22.73 0.20 -10.21 16 16 C 0.11 5.82 5.57 -21.29 -0.12 5.70 16 17 C -0.47 -23.27 9.05 23.46 0.21 -23.06 16 18 H 0.09 4.28 7.91 -2.91 -0.02 4.25 16 19 C 0.03 1.57 5.14 85.26 0.44 2.01 16 20 N -0.80 -39.11 10.97 21.82 0.24 -38.87 16 21 Si 0.99 34.55 29.59 68.60 2.03 36.58 16 22 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 23 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 24 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 25 C -0.26 -12.24 9.80 22.73 0.22 -12.02 16 26 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 36 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.43 6.18 -2.39 -0.01 1.42 16 41 H 0.42 9.16 8.84 -96.75 -0.85 8.30 16 42 H 0.11 4.80 7.59 -2.91 -0.02 4.78 16 43 H 0.11 5.70 6.18 -2.91 -0.02 5.68 16 44 H 0.30 12.96 8.30 -92.71 -0.77 12.19 16 45 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 46 H 0.12 4.84 7.60 -2.91 -0.02 4.82 16 Total: -1.00 -63.22 384.77 0.53 -62.69 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.10 Total: 38.03 kcal Atomic # 6 Polarization: -84.49 SS G_CDS: 3.64 Total: -80.85 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -0.59 Total: -69.63 kcal Atomic # 8 Polarization: -84.41 SS G_CDS: -4.33 Total: -88.74 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Atomic # 16 Polarization: 102.24 SS G_CDS: -0.32 Total: 101.92 kcal Total: -63.22 0.53 -62.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.542 kcal (2) G-P(sol) polarization free energy of solvation -63.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds