Wall clock time and date at job start Tue Mar 31 2020 14:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47345 * 2 1 4 4 C 1.52994 * 109.47502 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47502 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47270 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47341 * 305.00130 * 6 5 4 8 8 C 1.52998 * 109.46968 * 184.99958 * 6 5 4 9 9 N 1.46502 * 109.47078 * 65.00406 * 6 5 4 10 10 S 1.65595 * 119.99755 * 214.72529 * 9 6 5 11 11 O 1.42107 * 106.40010 * 178.81470 * 10 9 6 12 12 O 1.42097 * 106.40490 * 311.73145 * 10 9 6 13 13 C 1.76196 * 107.22290 * 65.27292 * 10 9 6 14 14 C 1.38630 * 119.74913 * 269.73051 * 13 10 9 15 15 C 1.37623 * 120.25034 * 179.71608 * 14 13 10 16 16 C 1.40720 * 119.73917 * 0.57109 * 15 14 13 17 17 C 1.41392 * 120.24346 * 179.68068 * 16 15 14 18 18 H 1.08000 * 120.00428 * 24.40733 * 17 16 15 19 19 C 1.39947 * 120.00253 * 204.41283 * 17 16 15 20 20 N 1.30831 * 119.99849 * 17.85120 * 19 17 16 21 21 Si 1.86803 * 120.00262 * 197.85655 * 19 17 16 22 22 H 1.48493 * 109.47062 * 59.99496 * 21 19 17 23 23 H 1.48494 * 109.47289 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46751 * 299.99844 * 21 19 17 25 25 C 1.40720 * 119.51269 * 359.70437 * 16 15 14 26 26 C 1.37616 * 119.74404 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.46801 * 59.99977 * 1 2 3 28 28 H 1.09003 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47609 * 299.99746 * 1 2 3 30 30 H 1.09001 * 109.47232 * 239.99869 * 2 1 3 31 31 H 1.09000 * 109.47146 * 120.00426 * 2 1 3 32 32 H 1.09006 * 109.46915 * 60.00203 * 3 2 1 33 33 H 1.09000 * 109.47346 * 300.00303 * 3 2 1 34 34 H 1.09001 * 109.46731 * 60.00079 * 4 3 2 35 35 H 1.09000 * 109.47489 * 300.00732 * 4 3 2 36 36 H 1.09001 * 109.47062 * 60.00282 * 5 4 3 37 37 H 1.09000 * 109.47346 * 300.00819 * 5 4 3 38 38 H 1.08996 * 109.47871 * 300.00126 * 8 6 5 39 39 H 1.09007 * 109.47330 * 60.00355 * 8 6 5 40 40 H 1.09002 * 109.47499 * 179.97438 * 8 6 5 41 41 H 0.96999 * 119.99652 * 34.99420 * 9 6 5 42 42 H 1.07998 * 119.88004 * 359.97438 * 14 13 10 43 43 H 1.07994 * 120.13238 * 180.27610 * 15 14 13 44 44 H 0.97001 * 119.99764 * 180.02562 * 20 19 17 45 45 H 1.08002 * 120.12313 * 179.97438 * 25 16 15 46 46 H 1.08001 * 119.87435 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6100 2.8849 0.0013 7 1 5.9734 2.2951 0.8428 8 6 6.1200 4.3219 0.1276 9 7 6.0983 2.3018 -1.2508 10 16 7.4856 1.3976 -1.2574 11 8 7.6720 0.9585 -2.5960 12 8 8.4577 2.1488 -0.5435 13 6 7.1711 -0.0472 -0.2991 14 6 7.4320 -0.0398 1.0624 15 6 7.1848 -1.1606 1.8218 16 6 6.6765 -2.3209 1.2089 17 6 6.4250 -3.4805 1.9778 18 1 6.2362 -3.3953 3.0377 19 6 6.4207 -4.7388 1.3653 20 7 6.9783 -4.8974 0.1925 21 14 5.6185 -6.1920 2.2223 22 1 4.1808 -5.8996 2.4515 23 1 5.7476 -7.4017 1.3708 24 1 6.2892 -6.4297 3.5258 25 6 6.4210 -2.3187 -0.1749 26 6 6.6695 -1.1843 -0.9133 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9336 0.9285 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3985 0.8913 37 1 3.7170 3.3991 -0.8886 38 1 5.7567 4.9118 -0.7138 39 1 5.7567 4.7558 1.0593 40 1 7.2100 4.3219 0.1281 41 1 5.6112 2.4487 -2.0766 42 1 7.8268 0.8502 1.5298 43 1 7.3845 -1.1512 2.8831 44 1 6.9750 -5.7695 -0.2321 45 1 6.0313 -3.2039 -0.6555 46 1 6.4737 -1.1802 -1.9754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081298792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:30 Heat of formation + Delta-G solvation = -103.148121 kcal Electronic energy + Delta-G solvation = -26298.239568 eV Core-core repulsion = 22698.687777 eV Total energy + Delta-G solvation = -3599.551790 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -37.67492 -37.44848 -36.40416 -35.19252 -35.06189 -34.03201 -31.45655 -30.25015 -29.55940 -29.45579 -26.32216 -25.80750 -22.42901 -21.48722 -21.23818 -20.83396 -20.68965 -18.95474 -17.61994 -17.14016 -16.44626 -16.01230 -15.50870 -15.40645 -14.47388 -14.16105 -14.06111 -13.93997 -13.55978 -13.36065 -13.21881 -13.04522 -12.75347 -12.41011 -12.18148 -12.16796 -11.96618 -11.73746 -11.56681 -11.42339 -11.35709 -11.32999 -11.24313 -11.21617 -11.00131 -10.87515 -10.72814 -10.67673 -10.44910 -10.35952 -10.31250 -9.75157 -9.62530 -9.47420 -9.02133 -7.94993 -7.69377 -7.13322 -4.79435 1.30414 2.27310 2.87606 2.89243 2.92212 2.94429 3.65854 3.76794 4.25526 4.55071 4.67725 4.98692 5.05183 5.12396 5.21140 5.27587 5.29692 5.39218 5.46317 5.62305 5.65546 5.69857 5.74762 5.87374 5.94281 5.98431 6.04866 6.06682 6.10371 6.13768 6.16158 6.34715 6.37796 6.40477 6.55293 6.60563 6.68725 6.71766 6.93150 7.05420 7.33384 7.37376 7.44384 7.64900 7.77387 7.97633 8.32720 8.52008 8.65885 9.78112 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.004894 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.711781 B = 5719.384912 C = 7742.869349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.115 4.115 4 C -0.124 4.124 5 C -0.120 4.120 6 C 0.154 3.846 7 H 0.087 0.913 8 C -0.171 4.171 9 N -1.120 6.120 10 S 2.691 3.309 11 O -0.987 6.987 12 O -0.986 6.986 13 C -0.784 4.784 14 C 0.000 4.000 15 C -0.238 4.238 16 C 0.141 3.859 17 C -0.437 4.437 18 H 0.086 0.914 19 C 0.073 3.927 20 N -0.765 5.765 21 Si 0.916 3.084 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.261 1.261 25 C -0.183 4.183 26 C -0.013 4.013 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.408 0.592 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.290 0.710 45 H 0.121 0.879 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 9.111 0.260 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.153 4.153 4 C -0.162 4.162 5 C -0.159 4.159 6 C 0.046 3.954 7 H 0.105 0.895 8 C -0.230 4.230 9 N -0.875 5.875 10 S 2.789 3.211 11 O -0.978 6.978 12 O -0.976 6.976 13 C -0.880 4.880 14 C -0.020 4.020 15 C -0.258 4.258 16 C 0.137 3.863 17 C -0.464 4.464 18 H 0.104 0.896 19 C -0.149 4.149 20 N -0.387 5.387 21 Si 0.739 3.261 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.186 1.186 25 C -0.203 4.203 26 C -0.033 4.033 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.241 0.759 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.139 0.861 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.609 9.176 -0.212 12.584 hybrid contribution -0.877 -1.221 0.380 1.551 sum -9.486 7.955 0.168 12.381 Atomic orbital electron populations 1.21770 0.96394 1.01363 1.01273 1.21551 0.95241 0.97127 1.02699 1.21586 0.95834 0.96595 1.01286 1.21634 0.94668 0.96275 1.03599 1.21874 0.94141 0.97669 1.02217 1.20680 0.94413 0.94235 0.86028 0.89527 1.22339 1.02840 0.96277 1.01593 1.55829 1.47322 1.69000 1.15397 1.01285 0.72603 0.73828 0.73337 1.93493 1.84925 1.82677 1.36708 1.93477 1.57664 1.71561 1.74868 1.29120 1.34182 1.17334 1.07402 1.20155 0.93244 0.96997 0.91642 1.21005 1.10870 0.95487 0.98485 1.17827 0.84509 0.91564 0.92377 1.19893 1.39208 0.90506 0.96782 0.89561 1.26126 0.92800 1.01291 0.94717 1.69822 1.28450 1.26380 1.14073 0.86221 0.80798 0.78904 0.80181 1.18379 1.19902 1.18561 1.21320 1.06751 0.97490 0.94725 1.20222 0.93689 0.92164 0.97220 0.93119 0.92961 0.93053 0.91877 0.91677 0.92472 0.92545 0.91244 0.91270 0.91134 0.91749 0.92558 0.91963 0.91117 0.75902 0.87939 0.88318 0.89909 0.86104 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.14 16 2 C -0.13 -1.51 5.93 -26.73 -0.16 -1.67 16 3 C -0.12 -1.26 5.21 -26.74 -0.14 -1.40 16 4 C -0.12 -1.55 5.10 -26.74 -0.14 -1.68 16 5 C -0.12 -1.29 4.81 -26.73 -0.13 -1.42 16 6 C 0.15 1.98 2.77 -67.93 -0.19 1.79 16 7 H 0.09 1.22 7.26 -51.93 -0.38 0.84 16 8 C -0.17 -1.99 9.52 37.16 0.35 -1.64 16 9 N -1.12 -16.07 4.93 -4.89 -0.02 -16.09 16 10 S 2.69 51.39 5.65 -107.50 -0.61 50.78 16 11 O -0.99 -21.36 17.26 -57.17 -0.99 -22.35 16 12 O -0.99 -20.66 16.48 -57.17 -0.94 -21.61 16 13 C -0.78 -16.86 5.85 -39.29 -0.23 -17.09 16 14 C 0.00 -0.01 8.89 -39.66 -0.35 -0.36 16 15 C -0.24 -5.49 9.80 -38.87 -0.38 -5.87 16 16 C 0.14 3.50 5.58 -106.82 -0.60 2.90 16 17 C -0.44 -10.56 9.05 -37.74 -0.34 -10.90 16 18 H 0.09 1.97 7.91 -52.49 -0.41 1.55 16 19 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 20 N -0.77 -18.29 10.95 55.55 0.61 -17.68 16 21 Si 0.92 16.92 29.60 -169.99 -5.03 11.88 16 22 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 23 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 24 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 25 C -0.18 -4.49 8.70 -38.87 -0.34 -4.82 16 26 C -0.01 -0.29 9.49 -39.66 -0.38 -0.66 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.07 0.96 7.61 -51.93 -0.40 0.56 16 41 H 0.41 4.94 8.84 -34.47 -0.30 4.64 16 42 H 0.10 2.01 7.59 -52.49 -0.40 1.61 16 43 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 44 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 45 H 0.12 3.03 6.15 -52.49 -0.32 2.70 16 46 H 0.10 2.18 7.60 -52.49 -0.40 1.78 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -28.93 386.71 -11.53 -40.46 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.64 Total: 11.14 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: -2.73 Total: -42.37 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.58 Total: -33.77 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -1.93 Total: -43.96 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.61 Total: 50.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.93 -11.53 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.686 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds