Wall clock time and date at job start Tue Mar 31 2020 15:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47125 * 2 1 4 4 C 1.53003 * 109.46957 * 119.99542 * 2 1 3 5 5 N 1.46503 * 109.46960 * 63.53796 * 4 2 1 6 6 C 1.46499 * 120.00152 * 83.29428 * 5 4 2 7 7 C 1.53002 * 109.47143 * 297.04072 * 6 5 4 8 8 C 1.53004 * 109.46802 * 57.03797 * 6 5 4 9 9 S 1.65601 * 119.99802 * 263.56746 * 5 4 2 10 10 O 1.42102 * 106.40122 * 23.26718 * 9 5 4 11 11 O 1.42106 * 106.40112 * 156.18523 * 9 5 4 12 12 C 1.76203 * 107.22025 * 269.72736 * 9 5 4 13 13 C 1.38638 * 119.74536 * 269.73356 * 12 9 5 14 14 C 1.37622 * 120.24272 * 179.72071 * 13 12 9 15 15 C 1.40718 * 119.74551 * 0.56637 * 14 13 12 16 16 C 1.41396 * 120.24159 * 179.68085 * 15 14 13 17 17 H 1.07994 * 120.00116 * 207.03417 * 16 15 14 18 18 C 1.39944 * 120.00032 * 27.03844 * 16 15 14 19 19 N 1.30832 * 120.00003 * 12.92061 * 18 16 15 20 20 Si 1.86804 * 119.99962 * 192.91834 * 18 16 15 21 21 H 1.48492 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46957 * 120.00108 * 20 18 16 23 23 H 1.48495 * 109.46942 * 239.99829 * 20 18 16 24 24 C 1.40709 * 119.50943 * 359.70490 * 15 14 13 25 25 C 1.37613 * 119.75066 * 359.97438 * 24 15 14 26 26 H 1.09006 * 109.46737 * 300.00393 * 1 2 3 27 27 H 1.08994 * 109.46773 * 60.00300 * 1 2 3 28 28 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47386 * 239.99757 * 2 1 3 30 30 H 1.09007 * 109.47454 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47281 * 299.99935 * 3 2 1 32 32 H 1.09002 * 109.47821 * 59.99702 * 3 2 1 33 33 H 1.09003 * 109.47067 * 303.53943 * 4 2 1 34 34 H 1.08996 * 109.47142 * 183.53768 * 4 2 1 35 35 H 1.08998 * 109.47175 * 177.03764 * 6 5 4 36 36 H 1.09000 * 109.46901 * 68.34557 * 7 6 5 37 37 H 1.08999 * 109.47312 * 188.34780 * 7 6 5 38 38 H 1.08999 * 109.46505 * 308.34824 * 7 6 5 39 39 H 1.09000 * 109.47367 * 60.00188 * 8 6 5 40 40 H 1.08998 * 109.46661 * 179.97438 * 8 6 5 41 41 H 1.08998 * 109.47228 * 299.99935 * 8 6 5 42 42 H 1.07995 * 119.87952 * 359.96669 * 13 12 9 43 43 H 1.08003 * 120.12137 * 180.27017 * 14 13 12 44 44 H 0.97001 * 119.99832 * 179.97438 * 19 18 16 45 45 H 1.08008 * 120.12451 * 179.97438 * 24 15 14 46 46 H 1.07994 * 119.88040 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6225 -2.1248 1.2075 6 6 2.4099 -3.1011 0.4505 7 6 2.3971 -2.7265 -1.0329 8 6 3.8512 -3.1018 0.9639 9 16 0.2566 -2.6066 2.0105 10 8 -0.5525 -1.4476 2.1570 11 8 -0.1915 -3.7908 1.3653 12 6 0.7464 -3.0801 3.6355 13 6 1.1062 -4.3946 3.8898 14 6 1.4960 -4.7744 5.1539 15 6 1.5169 -3.8254 6.1926 16 6 1.9091 -4.2057 7.4968 17 1 1.5348 -3.6640 8.3528 18 6 2.7824 -5.2840 7.6784 19 7 3.4326 -5.7785 6.6564 20 14 3.0200 -6.0173 9.3800 21 1 2.1764 -5.2836 10.3573 22 1 2.6246 -7.4485 9.3618 23 1 4.4473 -5.9030 9.7734 24 6 1.1443 -2.4954 5.9240 25 6 0.7643 -2.1366 4.6510 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6258 -0.2452 2.1382 34 1 3.1281 -0.6666 1.2816 35 1 1.9782 -4.0937 0.5784 36 1 2.9594 -1.8044 -1.1796 37 1 2.8544 -3.5274 -1.6138 38 1 1.3682 -2.5809 -1.3618 39 1 3.8604 -3.3687 2.0207 40 1 4.4370 -3.8285 0.4010 41 1 4.2830 -2.1092 0.8360 42 1 1.0844 -5.1224 3.0922 43 1 1.7800 -5.7980 5.3488 44 1 4.0382 -6.5257 6.7824 45 1 1.1563 -1.7590 6.7140 46 1 0.4775 -1.1165 4.4426 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081300294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:29 Heat of formation + Delta-G solvation = -76.670579 kcal Electronic energy + Delta-G solvation = -26998.360747 eV Core-core repulsion = 23399.957109 eV Total energy + Delta-G solvation = -3598.403638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.20372 -37.57111 -36.63018 -35.11450 -34.50162 -34.00256 -30.85310 -30.23388 -29.46611 -27.26067 -26.83208 -25.83447 -25.74576 -21.48437 -21.23290 -20.82018 -19.94275 -18.47391 -17.62377 -17.36048 -16.58277 -15.71244 -15.46035 -14.66738 -14.37219 -14.31484 -14.04130 -13.96322 -13.38483 -13.20893 -13.16994 -13.01032 -12.40013 -12.27039 -12.17673 -12.12629 -12.08331 -11.85967 -11.80871 -11.56551 -11.39155 -11.28610 -11.26599 -11.19195 -11.07285 -10.91194 -10.82902 -10.77299 -10.41277 -10.33029 -10.12895 -9.74728 -9.55353 -9.54567 -8.62635 -7.91199 -7.69556 -7.09213 -4.79896 1.24501 2.25433 2.88629 2.89866 2.92578 2.95749 3.63528 3.68070 4.27618 4.55689 4.86325 4.91460 5.02785 5.13682 5.19337 5.30347 5.35267 5.40710 5.52612 5.66532 5.72059 5.78025 5.81231 5.83668 5.98656 5.99220 6.03091 6.06411 6.10444 6.11745 6.16924 6.21377 6.42020 6.48121 6.58045 6.67725 6.68587 6.71695 6.89146 7.04299 7.10547 7.35417 7.42132 7.63908 7.78416 7.98234 8.33706 8.52841 8.65465 9.81513 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.003696 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.403859 B = 7572.949182 C = 7835.374702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C -0.144 4.144 4 C 0.131 3.869 5 N -0.996 5.996 6 C 0.144 3.856 7 C -0.160 4.160 8 C -0.163 4.163 9 S 2.687 3.313 10 O -0.976 6.976 11 O -0.985 6.985 12 C -0.784 4.784 13 C -0.018 4.018 14 C -0.178 4.178 15 C 0.140 3.860 16 C -0.438 4.438 17 H 0.087 0.913 18 C 0.071 3.929 19 N -0.773 5.773 20 Si 0.918 3.082 21 H -0.257 1.257 22 H -0.268 1.268 23 H -0.271 1.271 24 C -0.237 4.237 25 C 0.000 4.000 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.287 0.713 45 H 0.100 0.900 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 6.050 -9.787 11.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.202 4.202 4 C 0.005 3.995 5 N -0.830 5.830 6 C 0.038 3.962 7 C -0.219 4.219 8 C -0.221 4.221 9 S 2.787 3.213 10 O -0.967 6.967 11 O -0.976 6.976 12 C -0.879 4.879 13 C -0.038 4.038 14 C -0.198 4.198 15 C 0.136 3.864 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.150 4.150 19 N -0.396 5.396 20 Si 0.741 3.259 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.257 4.257 25 C -0.020 4.020 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.142 0.858 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.132 5.863 -10.247 11.997 hybrid contribution 0.795 -0.524 1.324 1.631 sum 2.927 5.339 -8.923 10.802 Atomic orbital electron populations 1.21899 0.94416 1.01631 1.01830 1.21819 0.97021 0.96088 0.99582 1.21771 1.00578 0.95946 1.01890 1.21244 1.00308 0.79889 0.98019 1.57812 1.45843 1.14331 1.65013 1.20757 0.92268 0.92299 0.90861 1.22307 1.02221 1.01616 0.95739 1.22158 0.95582 1.01870 1.02527 1.01521 0.72913 0.72699 0.74137 1.93504 1.65590 1.50026 1.87592 1.93470 1.79359 1.48856 1.75868 1.29330 1.35828 1.03067 1.19723 1.20267 0.93760 0.92706 0.97101 1.21387 1.05753 1.00094 0.92597 1.17867 0.85034 0.90397 0.93081 1.19956 1.21945 1.10936 0.93746 0.89515 1.26109 0.93938 0.95290 0.99662 1.69807 1.17817 1.19564 1.32443 0.86085 0.79144 0.79502 0.81133 1.18063 1.19305 1.19559 1.21084 1.12636 0.96151 0.95864 1.20156 0.92876 0.96072 0.92943 0.90938 0.93675 0.93736 0.90121 0.92865 0.92779 0.92461 0.90125 0.90710 0.88588 0.91947 0.92045 0.92243 0.91375 0.91977 0.92358 0.88063 0.85779 0.90176 0.88217 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.65 37.16 0.28 -1.67 16 2 C -0.13 -1.49 2.84 -90.62 -0.26 -1.75 16 3 C -0.14 -1.41 9.19 37.15 0.34 -1.07 16 4 C 0.13 1.76 4.68 -4.04 -0.02 1.74 16 5 N -1.00 -15.50 2.41 -107.30 -0.26 -15.76 16 6 C 0.14 2.01 3.21 -67.93 -0.22 1.79 16 7 C -0.16 -1.82 7.87 37.16 0.29 -1.53 16 8 C -0.16 -2.06 9.08 37.16 0.34 -1.72 16 9 S 2.69 52.49 4.80 -107.50 -0.52 51.97 16 10 O -0.98 -19.84 12.88 -57.17 -0.74 -20.58 16 11 O -0.98 -21.33 15.85 -57.17 -0.91 -22.23 16 12 C -0.78 -17.40 6.00 -39.29 -0.24 -17.64 16 13 C -0.02 -0.42 9.49 -39.66 -0.38 -0.80 16 14 C -0.18 -4.47 8.67 -38.87 -0.34 -4.81 16 15 C 0.14 3.55 5.56 -106.83 -0.59 2.96 16 16 C -0.44 -10.79 9.07 -37.74 -0.34 -11.13 16 17 H 0.09 2.03 7.88 -52.49 -0.41 1.62 16 18 C 0.07 1.64 5.22 -17.34 -0.09 1.54 16 19 N -0.77 -18.36 10.84 55.55 0.60 -17.76 16 20 Si 0.92 17.12 29.58 -169.99 -5.03 12.09 16 21 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 24 C -0.24 -5.60 9.80 -38.88 -0.38 -5.98 16 25 C 0.00 -0.01 9.49 -39.66 -0.38 -0.38 16 26 H 0.07 1.09 7.39 -51.93 -0.38 0.71 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.70 5.97 -51.93 -0.31 0.39 16 29 H 0.08 0.90 4.77 -51.93 -0.25 0.65 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.14 7.55 -51.93 -0.39 0.75 16 34 H 0.07 0.88 6.33 -51.93 -0.33 0.55 16 35 H 0.10 1.47 6.97 -51.93 -0.36 1.10 16 36 H 0.06 0.63 6.33 -51.93 -0.33 0.30 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.66 6.64 -51.93 -0.34 0.31 16 42 H 0.10 2.21 7.59 -52.49 -0.40 1.81 16 43 H 0.12 3.16 6.17 -52.48 -0.32 2.84 16 44 H 0.29 6.10 8.30 -40.82 -0.34 5.77 16 45 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 46 H 0.10 2.06 7.60 -52.49 -0.40 1.67 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -28.30 368.07 -10.43 -38.74 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.17 Total: 8.43 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: -1.97 Total: -40.44 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.34 Total: -33.51 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.64 Total: -42.81 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 52.49 SS G_CDS: -0.52 Total: 51.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.30 -10.43 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.934 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds