Wall clock time and date at job start Tue Mar 31 2020 15:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47125 * 2 1 4 4 C 1.53003 * 109.46957 * 119.99542 * 2 1 3 5 5 N 1.46503 * 109.46960 * 63.53796 * 4 2 1 6 6 C 1.46499 * 120.00152 * 83.29428 * 5 4 2 7 7 C 1.53002 * 109.47143 * 297.04072 * 6 5 4 8 8 C 1.53004 * 109.46802 * 57.03797 * 6 5 4 9 9 S 1.65601 * 119.99802 * 263.56746 * 5 4 2 10 10 O 1.42102 * 106.40122 * 23.26718 * 9 5 4 11 11 O 1.42106 * 106.40112 * 156.18523 * 9 5 4 12 12 C 1.76203 * 107.22025 * 269.72736 * 9 5 4 13 13 C 1.38638 * 119.74536 * 269.73356 * 12 9 5 14 14 C 1.37622 * 120.24272 * 179.72071 * 13 12 9 15 15 C 1.40718 * 119.74551 * 0.56637 * 14 13 12 16 16 C 1.41396 * 120.24159 * 179.68085 * 15 14 13 17 17 H 1.07994 * 120.00116 * 207.03417 * 16 15 14 18 18 C 1.39944 * 120.00032 * 27.03844 * 16 15 14 19 19 N 1.30832 * 120.00003 * 12.92061 * 18 16 15 20 20 Si 1.86804 * 119.99962 * 192.91834 * 18 16 15 21 21 H 1.48492 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46957 * 120.00108 * 20 18 16 23 23 H 1.48495 * 109.46942 * 239.99829 * 20 18 16 24 24 C 1.40709 * 119.50943 * 359.70490 * 15 14 13 25 25 C 1.37613 * 119.75066 * 359.97438 * 24 15 14 26 26 H 1.09006 * 109.46737 * 300.00393 * 1 2 3 27 27 H 1.08994 * 109.46773 * 60.00300 * 1 2 3 28 28 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47386 * 239.99757 * 2 1 3 30 30 H 1.09007 * 109.47454 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47281 * 299.99935 * 3 2 1 32 32 H 1.09002 * 109.47821 * 59.99702 * 3 2 1 33 33 H 1.09003 * 109.47067 * 303.53943 * 4 2 1 34 34 H 1.08996 * 109.47142 * 183.53768 * 4 2 1 35 35 H 1.08998 * 109.47175 * 177.03764 * 6 5 4 36 36 H 1.09000 * 109.46901 * 68.34557 * 7 6 5 37 37 H 1.08999 * 109.47312 * 188.34780 * 7 6 5 38 38 H 1.08999 * 109.46505 * 308.34824 * 7 6 5 39 39 H 1.09000 * 109.47367 * 60.00188 * 8 6 5 40 40 H 1.08998 * 109.46661 * 179.97438 * 8 6 5 41 41 H 1.08998 * 109.47228 * 299.99935 * 8 6 5 42 42 H 1.07995 * 119.87952 * 359.96669 * 13 12 9 43 43 H 1.08003 * 120.12137 * 180.27017 * 14 13 12 44 44 H 0.97001 * 119.99832 * 179.97438 * 19 18 16 45 45 H 1.08008 * 120.12451 * 179.97438 * 24 15 14 46 46 H 1.07994 * 119.88040 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6225 -2.1248 1.2075 6 6 2.4099 -3.1011 0.4505 7 6 2.3971 -2.7265 -1.0329 8 6 3.8512 -3.1018 0.9639 9 16 0.2566 -2.6066 2.0105 10 8 -0.5525 -1.4476 2.1570 11 8 -0.1915 -3.7908 1.3653 12 6 0.7464 -3.0801 3.6355 13 6 1.1062 -4.3946 3.8898 14 6 1.4960 -4.7744 5.1539 15 6 1.5169 -3.8254 6.1926 16 6 1.9091 -4.2057 7.4968 17 1 1.5348 -3.6640 8.3528 18 6 2.7824 -5.2840 7.6784 19 7 3.4326 -5.7785 6.6564 20 14 3.0200 -6.0173 9.3800 21 1 2.1764 -5.2836 10.3573 22 1 2.6246 -7.4485 9.3618 23 1 4.4473 -5.9030 9.7734 24 6 1.1443 -2.4954 5.9240 25 6 0.7643 -2.1366 4.6510 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6258 -0.2452 2.1382 34 1 3.1281 -0.6666 1.2816 35 1 1.9782 -4.0937 0.5784 36 1 2.9594 -1.8044 -1.1796 37 1 2.8544 -3.5274 -1.6138 38 1 1.3682 -2.5809 -1.3618 39 1 3.8604 -3.3687 2.0207 40 1 4.4370 -3.8285 0.4010 41 1 4.2830 -2.1092 0.8360 42 1 1.0844 -5.1224 3.0922 43 1 1.7800 -5.7980 5.3488 44 1 4.0382 -6.5257 6.7824 45 1 1.1563 -1.7590 6.7140 46 1 0.4775 -1.1165 4.4426 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081300294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:28 Heat of formation + Delta-G solvation = -91.482809 kcal Electronic energy + Delta-G solvation = -26999.003054 eV Core-core repulsion = 23399.957109 eV Total energy + Delta-G solvation = -3599.045944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.40274 -39.31140 -38.24397 -36.76037 -35.79868 -35.53096 -32.08619 -31.94956 -31.31302 -28.23662 -27.80809 -27.58667 -26.84427 -23.28314 -23.01309 -22.01403 -21.00871 -19.80375 -19.44010 -18.88758 -18.22802 -17.25464 -16.95511 -15.89795 -15.87627 -15.62371 -15.39937 -15.15448 -15.05468 -14.81313 -14.21496 -14.12018 -13.98790 -13.92607 -13.63699 -13.39896 -13.26250 -13.16058 -12.97595 -12.92847 -12.87198 -12.75697 -12.68080 -12.64029 -12.44078 -12.28419 -11.99258 -11.85586 -11.80561 -11.58752 -11.50669 -11.29695 -11.23880 -11.08852 -9.90585 -9.72399 -9.56804 -8.83613 -6.66581 -0.31402 0.46447 1.02662 1.35699 1.41077 1.52120 2.11570 2.18755 2.53967 2.95748 3.49269 3.52175 3.75847 4.03043 4.09036 4.21599 4.26092 4.27949 4.28740 4.32393 4.48515 4.70518 4.78642 4.82149 4.84501 4.85629 4.91107 4.94251 4.97318 5.04696 5.09313 5.10298 5.18491 5.22119 5.22600 5.31400 5.44479 5.48260 5.50782 5.51438 5.56733 5.65912 5.73243 5.88154 5.94150 6.14327 6.48430 6.68026 6.79207 8.10778 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.003696 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.403859 B = 7572.949182 C = 7835.374702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.141 4.141 4 C 0.121 3.879 5 N -0.987 5.987 6 C 0.135 3.865 7 C -0.155 4.155 8 C -0.157 4.157 9 S 2.709 3.291 10 O -0.984 6.984 11 O -1.007 7.007 12 C -0.796 4.796 13 C -0.024 4.024 14 C -0.201 4.201 15 C 0.112 3.888 16 C -0.469 4.469 17 H 0.090 0.910 18 C 0.033 3.967 19 N -0.802 5.802 20 Si 0.993 3.007 21 H -0.255 1.255 22 H -0.263 1.263 23 H -0.261 1.261 24 C -0.254 4.254 25 C -0.003 4.003 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.297 0.703 45 H 0.112 0.888 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 7.132 -10.901 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.198 4.198 4 C -0.004 4.004 5 N -0.825 5.825 6 C 0.029 3.971 7 C -0.214 4.214 8 C -0.216 4.216 9 S 2.807 3.193 10 O -0.975 6.975 11 O -0.998 6.998 12 C -0.888 4.888 13 C -0.044 4.044 14 C -0.221 4.221 15 C 0.108 3.892 16 C -0.496 4.496 17 H 0.108 0.892 18 C -0.185 4.185 19 N -0.426 5.426 20 Si 0.812 3.188 21 H -0.178 1.178 22 H -0.187 1.187 23 H -0.185 1.185 24 C -0.274 4.274 25 C -0.022 4.022 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.130 0.870 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.490 6.944 -11.336 13.744 hybrid contribution 0.366 -0.805 1.514 1.754 sum 3.857 6.139 -9.821 12.207 Atomic orbital electron populations 1.21925 0.96135 1.00103 1.02002 1.21807 0.95468 0.97565 0.99112 1.21752 1.01619 0.94162 1.02314 1.21552 1.01757 0.78349 0.98697 1.57523 1.45148 1.15719 1.64065 1.21001 0.92424 0.91070 0.92587 1.22275 1.02301 1.03353 0.93424 1.22124 0.95056 1.03628 1.00801 1.00859 0.73431 0.72002 0.73053 1.93491 1.66549 1.49900 1.87533 1.93434 1.80365 1.50248 1.75756 1.29871 1.34321 1.02575 1.21998 1.20429 0.93510 0.93689 0.96771 1.21385 1.07438 0.99760 0.93546 1.18209 0.85943 0.91233 0.93774 1.20234 1.23176 1.12590 0.93640 0.89169 1.26985 0.92916 0.94936 1.03680 1.69843 1.18136 1.20029 1.34571 0.84988 0.79374 0.78540 0.75903 1.17810 1.18708 1.18519 1.21319 1.13217 0.95979 0.96926 1.20439 0.92135 0.97176 0.92492 0.92594 0.91737 0.96052 0.88681 0.91196 0.91530 0.92959 0.91125 0.88355 0.90551 0.89921 0.90074 0.93110 0.94373 0.89888 0.90418 0.87297 0.86995 0.89198 0.86971 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 7.65 71.98 0.55 -3.24 16 2 C -0.12 -2.53 2.84 -10.79 -0.03 -2.56 16 3 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 4 C 0.12 3.02 4.68 86.38 0.40 3.42 16 5 N -0.99 -29.76 2.41 -493.38 -1.19 -30.95 16 6 C 0.13 3.56 3.21 44.99 0.14 3.71 16 7 C -0.15 -3.08 7.87 71.98 0.57 -2.51 16 8 C -0.16 -3.70 9.08 71.98 0.65 -3.04 16 9 S 2.71 106.30 4.80 -56.49 -0.27 106.03 16 10 O -0.98 -39.96 12.88 -128.00 -1.65 -41.60 16 11 O -1.01 -44.19 15.85 -128.00 -2.03 -46.22 16 12 C -0.80 -36.04 6.00 22.46 0.13 -35.90 16 13 C -0.02 -1.17 9.49 22.22 0.21 -0.96 16 14 C -0.20 -10.57 8.67 22.73 0.20 -10.37 16 15 C 0.11 5.90 5.56 -21.29 -0.12 5.78 16 16 C -0.47 -23.79 9.07 23.46 0.21 -23.58 16 17 H 0.09 4.33 7.88 -2.91 -0.02 4.31 16 18 C 0.03 1.55 5.22 85.26 0.45 1.99 16 19 N -0.80 -38.99 10.84 21.83 0.24 -38.75 16 20 Si 0.99 34.99 29.58 68.60 2.03 37.02 16 21 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 22 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 23 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 24 C -0.25 -12.34 9.80 22.73 0.22 -12.12 16 25 C 0.00 -0.12 9.49 22.22 0.21 0.09 16 26 H 0.05 1.64 7.39 -2.38 -0.02 1.62 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.02 0.64 5.97 -2.38 -0.01 0.62 16 29 H 0.10 1.76 4.77 -2.39 -0.01 1.74 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.91 7.55 -2.39 -0.02 1.90 16 34 H 0.10 2.00 6.33 -2.39 -0.02 1.98 16 35 H 0.08 2.32 6.97 -2.39 -0.02 2.31 16 36 H 0.08 1.31 6.33 -2.39 -0.02 1.29 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.11 8.04 -2.39 -0.02 1.09 16 39 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.50 6.64 -2.39 -0.02 1.49 16 42 H 0.11 4.97 7.59 -2.91 -0.02 4.94 16 43 H 0.11 6.02 6.17 -2.91 -0.02 6.00 16 44 H 0.30 12.79 8.30 -92.71 -0.77 12.02 16 45 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 46 H 0.13 4.99 7.60 -2.91 -0.02 4.97 16 Total: -1.00 -62.97 368.07 2.56 -60.42 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.96 Total: 34.98 kcal Atomic # 6 Polarization: -85.39 SS G_CDS: 4.47 Total: -80.93 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -0.95 Total: -69.70 kcal Atomic # 8 Polarization: -84.15 SS G_CDS: -3.68 Total: -87.82 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Atomic # 16 Polarization: 106.30 SS G_CDS: -0.27 Total: 106.03 kcal Total: -62.97 2.56 -60.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.067 kcal (2) G-P(sol) polarization free energy of solvation -62.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds