Wall clock time and date at job start Tue Mar 31 2020 14:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34897 * 116.99816 * 2 1 4 4 O 1.21626 * 120.00505 * 0.02562 * 3 2 1 5 5 C 1.46395 * 119.99671 * 180.02562 * 3 2 1 6 6 S 1.75835 * 125.46624 * 0.14795 * 5 3 2 7 7 C 1.70610 * 91.56654 * 180.20761 * 6 5 3 8 8 C 1.33864 * 110.96179 * 359.80815 * 7 6 5 9 9 C 1.36754 * 125.46455 * 180.02562 * 5 3 2 10 10 C 1.50706 * 123.35361 * 359.97438 * 9 5 3 11 11 N 1.46901 * 109.47059 * 73.51882 * 10 9 5 12 12 C 1.46899 * 111.00184 * 174.22723 * 11 10 9 13 13 C 1.50693 * 109.47579 * 179.66694 * 12 11 10 14 14 H 1.08000 * 119.99634 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00351 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00301 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99936 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47307 * 89.99892 * 17 15 13 19 19 H 1.48501 * 109.47153 * 210.00179 * 17 15 13 20 20 H 1.48497 * 109.46994 * 329.99533 * 17 15 13 21 21 C 1.46904 * 111.00035 * 50.27124 * 11 10 9 22 22 C 1.53004 * 109.46575 * 79.24759 * 21 11 10 23 23 C 1.52999 * 109.47243 * 76.28681 * 22 21 11 24 24 C 1.52999 * 109.46815 * 196.28931 * 22 21 11 25 25 C 1.53005 * 109.47309 * 316.28322 * 22 21 11 26 26 H 1.08999 * 109.46599 * 299.99847 * 1 2 3 27 27 H 1.09001 * 109.46976 * 59.99411 * 1 2 3 28 28 H 1.09002 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.08003 * 124.52343 * 179.84695 * 7 6 5 30 30 H 1.08000 * 122.44550 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46727 * 313.52406 * 10 9 5 32 32 H 1.08995 * 109.47015 * 193.51713 * 10 9 5 33 33 H 1.08999 * 109.47041 * 299.67189 * 12 11 10 34 34 H 1.09002 * 109.46547 * 59.66811 * 12 11 10 35 35 H 0.97003 * 120.00254 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.47022 * 199.24420 * 21 11 10 37 37 H 1.08993 * 109.47171 * 319.24978 * 21 11 10 38 38 H 1.09000 * 109.46790 * 41.23094 * 23 22 21 39 39 H 1.09002 * 109.47127 * 161.22738 * 23 22 21 40 40 H 1.08998 * 109.47287 * 281.22736 * 23 22 21 41 41 H 1.09002 * 109.47330 * 59.99839 * 24 22 21 42 42 H 1.08996 * 109.47070 * 180.02562 * 24 22 21 43 43 H 1.09005 * 109.46835 * 299.99574 * 24 22 21 44 44 H 1.09006 * 109.46847 * 76.06365 * 25 22 21 45 45 H 1.08997 * 109.47023 * 196.06525 * 25 22 21 46 46 H 1.08995 * 109.46921 * 316.06998 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5264 1.2785 -0.0006 6 16 4.6201 -0.0982 -0.0050 7 6 5.9845 0.9261 0.0033 8 6 5.6170 2.2133 0.0048 9 6 4.2605 2.4324 -0.0001 10 6 3.6432 3.8072 0.0005 11 7 3.0842 4.0924 1.3287 12 6 2.5953 5.4753 1.4083 13 6 2.0231 5.7278 2.7793 14 1 2.0231 4.9399 3.5179 15 6 1.5007 6.9650 3.0912 16 7 1.0018 7.1855 4.2879 17 14 1.5014 8.3281 1.8139 18 1 0.2429 8.2706 1.0278 19 1 1.6002 9.6443 2.4946 20 1 2.6619 8.1532 0.9040 21 6 4.0695 3.8208 2.3839 22 6 5.0560 4.9870 2.4728 23 6 4.3897 6.1653 3.1860 24 6 6.2937 4.5491 3.2584 25 6 5.4710 5.4126 1.0630 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 7.0082 0.5820 0.0063 30 1 6.3342 3.0207 0.0094 31 1 2.8487 3.8490 -0.7447 32 1 4.4058 4.5480 -0.2395 33 1 3.4208 6.1635 1.2267 34 1 1.8208 5.6306 0.6571 35 1 0.6339 8.0559 4.5072 36 1 3.5567 3.7050 3.3387 37 1 4.6106 2.9043 2.1486 38 1 3.8071 5.7966 4.0302 39 1 5.1556 6.8525 3.5456 40 1 3.7319 6.6862 2.4903 41 1 6.7683 3.7096 2.7503 42 1 6.9963 5.3799 3.3221 43 1 5.9981 4.2458 4.2628 44 1 4.6638 5.9831 0.6034 45 1 6.3668 6.0309 1.1191 46 1 5.6777 4.5270 0.4622 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088512252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:43 Heat of formation + Delta-G solvation = 19.160558 kcal Electronic energy + Delta-G solvation = -27784.555284 eV Core-core repulsion = 24190.307196 eV Total energy + Delta-G solvation = -3594.248088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38515 -39.56958 -37.56218 -35.93396 -33.46044 -32.71094 -30.37971 -29.21342 -27.96987 -27.46370 -26.02705 -25.58483 -24.56050 -22.58090 -21.86684 -20.22921 -18.75047 -18.30298 -18.12864 -16.88903 -16.44909 -16.11963 -15.74495 -15.09278 -14.99030 -14.80861 -14.39760 -13.85021 -13.43860 -13.23408 -13.15109 -13.05057 -12.67364 -12.49214 -12.28487 -12.23774 -11.92244 -11.70345 -11.39720 -11.22513 -11.17715 -10.97195 -10.82844 -10.57958 -10.53765 -10.45895 -10.42619 -10.09691 -9.91607 -9.80031 -9.68863 -9.24438 -8.96516 -8.80750 -8.40045 -8.34801 -6.87412 -5.97169 -3.81397 0.49438 1.50709 1.92083 2.35981 2.86077 3.18572 3.31864 3.38637 3.41021 4.47069 4.80360 5.05105 5.09780 5.22565 5.24597 5.31856 5.32348 5.35655 5.47040 5.52328 5.61289 5.65280 5.74029 5.89947 6.01511 6.08510 6.16411 6.21198 6.23517 6.36163 6.39347 6.44132 6.52186 6.58430 6.65477 6.84780 6.91693 7.01370 7.10357 7.16202 7.39028 7.71174 7.92426 8.04913 8.06725 8.22960 8.75803 9.08558 9.62878 11.16127 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.005333 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.767595 B = 5249.429096 C = 6594.508127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.368 6.368 3 C 0.526 3.474 4 O -0.450 6.450 5 C -0.240 4.240 6 S 0.213 5.787 7 C -0.232 4.232 8 C -0.148 4.148 9 C 0.004 3.996 10 C 0.072 3.928 11 N -0.500 5.500 12 C 0.137 3.863 13 C -0.483 4.483 14 H 0.081 0.919 15 C 0.065 3.935 16 N -0.901 5.901 17 Si 0.862 3.138 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.267 1.267 21 C 0.077 3.923 22 C -0.093 4.093 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.171 4.171 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.167 0.833 30 H 0.148 0.852 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.007 0.993 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.476 -14.067 -9.857 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.287 6.287 3 C 0.367 3.633 4 O -0.335 6.335 5 C -0.359 4.359 6 S 0.482 5.518 7 C -0.370 4.370 8 C -0.179 4.179 9 C -0.011 4.011 10 C -0.057 4.057 11 N -0.222 5.222 12 C 0.011 3.989 13 C -0.521 4.521 14 H 0.099 0.901 15 C -0.136 4.136 16 N -0.541 5.541 17 Si 0.689 3.311 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.192 1.192 21 C -0.052 4.052 22 C -0.095 4.095 23 C -0.198 4.198 24 C -0.191 4.191 25 C -0.227 4.227 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.185 0.815 30 H 0.165 0.835 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.026 0.974 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.540 -15.540 -9.685 20.204 hybrid contribution 0.786 2.929 -0.591 3.090 sum 9.326 -12.611 -10.276 18.751 Atomic orbital electron populations 1.23201 0.76000 1.03153 1.02916 1.86526 1.23541 1.32992 1.85611 1.19547 0.87055 0.81879 0.74813 1.91031 1.65076 1.34879 1.42469 1.23308 0.94133 0.97373 1.21078 1.83056 0.93367 1.07578 1.67808 1.25342 1.04658 0.98246 1.08750 1.20006 0.95383 0.96972 1.05568 1.19570 0.92054 0.95770 0.93734 1.21634 0.98828 0.89912 0.95356 1.62277 1.33537 1.27146 0.99248 1.20988 0.94929 0.84485 0.98484 1.20844 1.36825 0.98067 0.96374 0.90134 1.24768 0.95917 0.97984 0.94882 1.69862 1.41318 1.23175 1.19729 0.87092 0.79026 0.82430 0.82504 1.20307 1.21379 1.19186 1.22203 0.91419 0.94730 0.96825 1.21159 0.95288 0.98456 0.94611 1.22939 0.98052 0.95806 1.03004 1.21835 0.97332 0.99885 1.00017 1.22890 1.01197 1.00912 0.97733 0.91479 0.92053 0.88469 0.81498 0.83496 0.89901 0.91455 0.96095 0.96216 0.92870 0.90659 0.93147 0.90573 0.97390 0.88160 0.93913 0.93597 0.92979 0.90765 0.93917 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.57 101.05 1.07 1.54 16 2 O -0.37 -5.34 10.42 -41.03 -0.43 -5.76 16 3 C 0.53 8.93 7.92 34.01 0.27 9.20 16 4 O -0.45 -9.09 13.94 -19.36 -0.27 -9.36 16 5 C -0.24 -3.66 6.45 -36.84 -0.24 -3.90 16 6 S 0.21 2.39 22.92 -107.50 -2.46 -0.07 16 7 C -0.23 -2.40 10.92 29.20 0.32 -2.09 16 8 C -0.15 -1.83 8.50 -41.42 -0.35 -2.18 16 9 C 0.00 0.06 3.71 -105.46 -0.39 -0.33 16 10 C 0.07 1.27 3.87 -4.97 -0.02 1.25 16 11 N -0.50 -10.46 4.25 -237.52 -1.01 -11.47 16 12 C 0.14 3.23 3.10 -4.98 -0.02 3.21 16 13 C -0.48 -13.07 5.53 -34.45 -0.19 -13.26 16 14 H 0.08 2.42 6.49 -52.49 -0.34 2.08 16 15 C 0.06 1.82 4.82 -17.82 -0.09 1.73 16 16 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 17 Si 0.86 21.32 26.56 -169.99 -4.52 16.81 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 21 C 0.08 1.49 4.47 -3.82 -0.02 1.47 16 22 C -0.09 -1.69 0.77 -154.50 -0.12 -1.81 16 23 C -0.14 -3.07 6.55 37.16 0.24 -2.83 16 24 C -0.13 -2.05 8.26 37.16 0.31 -1.74 16 25 C -0.17 -2.80 6.62 37.16 0.25 -2.55 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16 30 H 0.15 1.65 6.15 -52.49 -0.32 1.33 16 31 H 0.08 1.58 7.06 -51.93 -0.37 1.21 16 32 H 0.07 1.11 3.61 -51.93 -0.19 0.92 16 33 H 0.02 0.51 1.79 -51.93 -0.09 0.41 16 34 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.08 1.67 6.53 -51.93 -0.34 1.33 16 37 H 0.05 0.90 5.42 -51.93 -0.28 0.61 16 38 H 0.08 1.87 6.16 -51.93 -0.32 1.55 16 39 H 0.01 0.15 7.99 -51.93 -0.42 -0.27 16 40 H 0.10 2.37 2.20 -51.93 -0.11 2.25 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.36 4.27 -51.93 -0.22 1.14 16 45 H 0.04 0.64 8.04 -51.93 -0.42 0.22 16 46 H 0.06 0.89 2.96 -51.93 -0.15 0.73 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -31.12 346.30 -7.76 -38.88 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.09 Total: 4.27 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 1.03 Total: -12.26 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.24 Total: -37.71 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.70 Total: -15.13 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.52 Total: 16.81 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.46 Total: -0.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.12 -7.76 -38.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088512252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.039 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds