Wall clock time and date at job start Tue Mar 31 2020 14:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34897 * 116.99816 * 2 1 4 4 O 1.21626 * 120.00505 * 0.02562 * 3 2 1 5 5 C 1.46395 * 119.99671 * 180.02562 * 3 2 1 6 6 S 1.75835 * 125.46624 * 0.14795 * 5 3 2 7 7 C 1.70610 * 91.56654 * 180.20761 * 6 5 3 8 8 C 1.33864 * 110.96179 * 359.80815 * 7 6 5 9 9 C 1.36754 * 125.46455 * 180.02562 * 5 3 2 10 10 C 1.50706 * 123.35361 * 359.97438 * 9 5 3 11 11 N 1.46901 * 109.47059 * 73.51882 * 10 9 5 12 12 C 1.46899 * 111.00184 * 174.22723 * 11 10 9 13 13 C 1.50693 * 109.47579 * 179.66694 * 12 11 10 14 14 H 1.08000 * 119.99634 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00351 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00301 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99936 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47307 * 89.99892 * 17 15 13 19 19 H 1.48501 * 109.47153 * 210.00179 * 17 15 13 20 20 H 1.48497 * 109.46994 * 329.99533 * 17 15 13 21 21 C 1.46904 * 111.00035 * 50.27124 * 11 10 9 22 22 C 1.53004 * 109.46575 * 79.24759 * 21 11 10 23 23 C 1.52999 * 109.47243 * 76.28681 * 22 21 11 24 24 C 1.52999 * 109.46815 * 196.28931 * 22 21 11 25 25 C 1.53005 * 109.47309 * 316.28322 * 22 21 11 26 26 H 1.08999 * 109.46599 * 299.99847 * 1 2 3 27 27 H 1.09001 * 109.46976 * 59.99411 * 1 2 3 28 28 H 1.09002 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.08003 * 124.52343 * 179.84695 * 7 6 5 30 30 H 1.08000 * 122.44550 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46727 * 313.52406 * 10 9 5 32 32 H 1.08995 * 109.47015 * 193.51713 * 10 9 5 33 33 H 1.08999 * 109.47041 * 299.67189 * 12 11 10 34 34 H 1.09002 * 109.46547 * 59.66811 * 12 11 10 35 35 H 0.97003 * 120.00254 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.47022 * 199.24420 * 21 11 10 37 37 H 1.08993 * 109.47171 * 319.24978 * 21 11 10 38 38 H 1.09000 * 109.46790 * 41.23094 * 23 22 21 39 39 H 1.09002 * 109.47127 * 161.22738 * 23 22 21 40 40 H 1.08998 * 109.47287 * 281.22736 * 23 22 21 41 41 H 1.09002 * 109.47330 * 59.99839 * 24 22 21 42 42 H 1.08996 * 109.47070 * 180.02562 * 24 22 21 43 43 H 1.09005 * 109.46835 * 299.99574 * 24 22 21 44 44 H 1.09006 * 109.46847 * 76.06365 * 25 22 21 45 45 H 1.08997 * 109.47023 * 196.06525 * 25 22 21 46 46 H 1.08995 * 109.46921 * 316.06998 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5264 1.2785 -0.0006 6 16 4.6201 -0.0982 -0.0050 7 6 5.9845 0.9261 0.0033 8 6 5.6170 2.2133 0.0048 9 6 4.2605 2.4324 -0.0001 10 6 3.6432 3.8072 0.0005 11 7 3.0842 4.0924 1.3287 12 6 2.5953 5.4753 1.4083 13 6 2.0231 5.7278 2.7793 14 1 2.0231 4.9399 3.5179 15 6 1.5007 6.9650 3.0912 16 7 1.0018 7.1855 4.2879 17 14 1.5014 8.3281 1.8139 18 1 0.2429 8.2706 1.0278 19 1 1.6002 9.6443 2.4946 20 1 2.6619 8.1532 0.9040 21 6 4.0695 3.8208 2.3839 22 6 5.0560 4.9870 2.4728 23 6 4.3897 6.1653 3.1860 24 6 6.2937 4.5491 3.2584 25 6 5.4710 5.4126 1.0630 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 7.0082 0.5820 0.0063 30 1 6.3342 3.0207 0.0094 31 1 2.8487 3.8490 -0.7447 32 1 4.4058 4.5480 -0.2395 33 1 3.4208 6.1635 1.2267 34 1 1.8208 5.6306 0.6571 35 1 0.6339 8.0559 4.5072 36 1 3.5567 3.7050 3.3387 37 1 4.6106 2.9043 2.1486 38 1 3.8071 5.7966 4.0302 39 1 5.1556 6.8525 3.5456 40 1 3.7319 6.6862 2.4903 41 1 6.7683 3.7096 2.7503 42 1 6.9963 5.3799 3.3221 43 1 5.9981 4.2458 4.2628 44 1 4.6638 5.9831 0.6034 45 1 6.3668 6.0309 1.1191 46 1 5.6777 4.5270 0.4622 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088512252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:42 Heat of formation + Delta-G solvation = -1.299312 kcal Electronic energy + Delta-G solvation = -27785.442490 eV Core-core repulsion = 24190.307196 eV Total energy + Delta-G solvation = -3595.135295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.72401 -40.92886 -38.73515 -37.18505 -35.08035 -34.65242 -31.63408 -30.82500 -29.46345 -28.58405 -27.38399 -27.03170 -26.15065 -24.08037 -22.96501 -21.92481 -19.87982 -19.74180 -19.36954 -18.90228 -17.63569 -17.33208 -16.93110 -16.65518 -16.56026 -16.19422 -15.82179 -15.44534 -14.74576 -14.64126 -14.44905 -14.30635 -14.28524 -13.74743 -13.61423 -13.46342 -13.25204 -12.96935 -12.91525 -12.81860 -12.61761 -12.47470 -12.36048 -12.20327 -12.03441 -11.77287 -11.73483 -11.69048 -11.56758 -11.52767 -11.28623 -10.91604 -10.87881 -10.52422 -9.82501 -9.35838 -8.48174 -8.18102 -6.05350 -0.54306 0.54197 1.00815 1.31509 1.32505 1.34245 1.41695 1.77300 1.98888 2.37102 3.14916 3.47085 3.91072 3.95461 4.04467 4.07888 4.20163 4.26117 4.32842 4.35261 4.38972 4.55206 4.56719 4.70477 4.73547 4.80014 4.80734 4.92165 4.97416 4.99570 5.05491 5.08867 5.19904 5.25669 5.28472 5.32996 5.36144 5.42961 5.48838 5.52537 5.63182 5.74911 6.08346 6.12788 6.55152 6.80237 6.83153 6.84747 7.42237 8.98654 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.005333 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.767595 B = 5249.429096 C = 6594.508127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.522 3.478 4 O -0.500 6.500 5 C -0.285 4.285 6 S 0.272 5.728 7 C -0.205 4.205 8 C -0.164 4.164 9 C -0.006 4.006 10 C 0.076 3.924 11 N -0.520 5.520 12 C 0.148 3.852 13 C -0.468 4.468 14 H 0.035 0.965 15 C 0.013 3.987 16 N -0.949 5.949 17 Si 0.919 3.081 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.243 1.243 21 C 0.087 3.913 22 C -0.091 4.091 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.166 4.166 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.139 0.861 29 H 0.210 0.790 30 H 0.166 0.834 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.000 1.000 35 H 0.261 0.739 36 H 0.031 0.969 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.019 0.981 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.319 -15.720 -12.044 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.366 3.634 4 O -0.388 6.388 5 C -0.404 4.404 6 S 0.542 5.458 7 C -0.343 4.343 8 C -0.194 4.194 9 C -0.022 4.022 10 C -0.052 4.052 11 N -0.243 5.243 12 C 0.022 3.978 13 C -0.506 4.506 14 H 0.053 0.947 15 C -0.183 4.183 16 N -0.591 5.591 17 Si 0.744 3.256 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.166 1.166 21 C -0.041 4.041 22 C -0.093 4.093 23 C -0.191 4.191 24 C -0.185 4.185 25 C -0.222 4.222 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.157 0.843 29 H 0.227 0.773 30 H 0.183 0.817 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.405 -17.237 -11.891 24.339 hybrid contribution -0.427 3.210 0.126 3.241 sum 11.978 -14.027 -11.766 21.878 Atomic orbital electron populations 1.23465 0.74636 1.05574 1.02083 1.86518 1.24942 1.31847 1.85074 1.20047 0.88108 0.81761 0.73510 1.91002 1.66401 1.36359 1.45071 1.23462 0.93889 0.99837 1.23181 1.82892 0.91998 1.05183 1.65776 1.25857 1.06301 0.97203 1.04957 1.20038 0.93882 0.98533 1.06991 1.19522 0.93599 0.94227 0.94896 1.21529 0.98587 0.92468 0.92615 1.62022 1.35509 1.25187 1.01585 1.20755 0.94843 0.86939 0.95275 1.20893 1.36018 0.96698 0.97031 0.94689 1.25475 0.95815 1.00430 0.96619 1.70017 1.43249 1.23833 1.21999 0.86159 0.79730 0.79394 0.80363 1.20466 1.20948 1.16614 1.22044 0.91144 0.96575 0.94370 1.21097 0.95889 0.96128 0.96156 1.22704 0.97757 0.97359 1.01324 1.21773 0.96015 1.01466 0.99221 1.22791 1.01229 1.02104 0.96078 0.93247 0.92058 0.84333 0.77329 0.81707 0.92155 0.89722 0.94361 0.98146 0.92977 0.95047 0.90751 0.94914 0.96160 0.90232 0.90957 0.92202 0.94075 0.92962 0.91568 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 10.57 113.37 1.20 2.02 16 2 O -0.37 -10.56 10.42 -58.12 -0.61 -11.17 16 3 C 0.52 18.10 7.92 69.95 0.55 18.66 16 4 O -0.50 -21.39 13.94 19.42 0.27 -21.12 16 5 C -0.29 -8.35 6.45 24.05 0.16 -8.19 16 6 S 0.27 5.09 22.92 -56.49 -1.29 3.79 16 7 C -0.21 -3.10 10.92 66.82 0.73 -2.37 16 8 C -0.16 -3.34 8.50 21.08 0.18 -3.16 16 9 C -0.01 -0.17 3.71 -20.41 -0.08 -0.25 16 10 C 0.08 2.69 3.87 85.56 0.33 3.02 16 11 N -0.52 -22.46 4.25 -905.37 -3.85 -26.31 16 12 C 0.15 7.26 3.10 85.56 0.27 7.52 16 13 C -0.47 -26.93 5.53 25.60 0.14 -26.79 16 14 H 0.03 2.29 6.49 -2.91 -0.02 2.27 16 15 C 0.01 0.74 4.82 84.65 0.41 1.14 16 16 N -0.95 -60.03 13.96 21.44 0.30 -59.73 16 17 Si 0.92 45.04 26.56 68.60 1.82 46.87 16 18 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.24 -10.84 6.54 99.48 0.65 -10.19 16 21 C 0.09 3.42 4.47 86.30 0.39 3.81 16 22 C -0.09 -3.19 0.77 -52.18 -0.04 -3.23 16 23 C -0.13 -5.95 6.55 71.98 0.47 -5.48 16 24 C -0.13 -3.54 8.26 71.98 0.59 -2.95 16 25 C -0.17 -4.92 6.62 71.98 0.48 -4.44 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.21 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.17 2.74 6.15 -2.91 -0.02 2.72 16 31 H 0.06 2.38 7.06 -2.39 -0.02 2.36 16 32 H 0.09 2.64 3.61 -2.39 -0.01 2.63 16 33 H 0.04 1.81 1.79 -2.39 0.00 1.81 16 34 H 0.00 0.03 7.57 -2.39 -0.02 0.01 16 35 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.03 1.49 6.53 -2.39 -0.02 1.47 16 37 H 0.07 2.55 5.42 -2.39 -0.01 2.53 16 38 H 0.03 1.69 6.16 -2.39 -0.01 1.67 16 39 H 0.02 0.80 7.99 -2.39 -0.02 0.78 16 40 H 0.08 3.81 2.20 -2.39 -0.01 3.81 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 43 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.05 1.80 4.27 -2.38 -0.01 1.79 16 45 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 46 H 0.09 2.14 2.96 -2.39 -0.01 2.13 16 Total: -1.00 -74.92 346.30 3.38 -71.54 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.97 Total: 16.81 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 5.77 Total: -20.68 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -3.55 Total: -86.04 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.34 Total: -32.29 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.82 Total: 46.87 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.29 Total: 3.79 kcal Total: -74.92 3.38 -71.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088512252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.238 kcal (2) G-P(sol) polarization free energy of solvation -74.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds