Wall clock time and date at job start Tue Mar 31 2020 14:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47063 * 2 1 4 4 C 1.38311 * 119.96493 * 270.01895 * 3 2 1 5 5 C 1.38260 * 120.14010 * 179.97438 * 4 3 2 6 6 C 1.38135 * 120.07252 * 359.72306 * 5 4 3 7 7 C 1.38851 * 119.92499 * 0.55200 * 6 5 4 8 8 N 1.39929 * 120.06803 * 179.71768 * 7 6 5 9 9 C 1.34775 * 120.00092 * 324.64832 * 8 7 6 10 10 O 1.21290 * 119.99713 * 4.51815 * 9 8 7 11 11 C 1.50702 * 120.00034 * 184.51436 * 9 8 7 12 12 C 1.50692 * 109.47233 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96402 * 270.02324 * 12 11 9 14 14 C 1.38278 * 120.13889 * 179.97438 * 13 12 11 15 15 C 1.38134 * 120.06628 * 359.67917 * 14 13 12 16 16 C 1.38855 * 119.92972 * 0.59545 * 15 14 13 17 17 O 1.35752 * 120.06477 * 179.69434 * 16 15 14 18 18 C 1.34825 * 117.00401 * 354.36013 * 17 16 15 19 19 H 1.08001 * 120.00022 * 5.02072 * 18 17 16 20 20 C 1.38654 * 120.00134 * 185.01712 * 18 17 16 21 21 N 1.31557 * 119.99832 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47482 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46603 * 120.00633 * 22 20 18 25 25 H 1.48505 * 109.47143 * 240.00069 * 22 20 18 26 26 C 1.38085 * 119.96839 * 89.99873 * 12 11 9 27 27 C 1.38090 * 119.96607 * 89.99948 * 3 2 1 28 28 H 1.09002 * 109.47081 * 60.00330 * 1 2 3 29 29 H 1.09007 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47489 * 300.00206 * 1 2 3 31 31 H 1.09001 * 109.47393 * 239.99960 * 2 1 3 32 32 H 1.09002 * 109.47081 * 119.99669 * 2 1 3 33 33 H 1.08000 * 119.92427 * 359.95590 * 4 3 2 34 34 H 1.08000 * 119.96049 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.03438 * 180.27804 * 6 5 4 36 36 H 0.96998 * 119.99376 * 144.63858 * 8 7 6 37 37 H 1.08994 * 109.46882 * 59.99931 * 11 9 8 38 38 H 1.09000 * 109.47172 * 300.00253 * 11 9 8 39 39 H 1.08002 * 119.93052 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.96874 * 179.97438 * 14 13 12 41 41 H 1.08003 * 120.03111 * 180.31580 * 15 14 13 42 42 H 0.97002 * 119.99576 * 179.97438 * 21 20 18 43 43 H 1.07993 * 120.03174 * 0.04735 * 26 12 11 44 44 H 1.07996 * 120.03567 * 0.04106 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0722 -1.1982 5 6 2.7225 3.3759 -1.2025 6 6 2.9489 4.0340 -0.0092 7 6 2.7245 3.3808 1.1954 8 7 2.9585 4.0426 2.4059 9 6 3.9787 4.9171 2.5097 10 8 4.6431 5.1923 1.5330 11 6 4.2939 5.5529 3.8391 12 6 5.4689 6.4837 3.6848 13 6 6.7552 6.0088 3.8675 14 6 7.8360 6.8596 3.7262 15 6 7.6344 8.1856 3.3955 16 6 6.3442 8.6666 3.2171 17 8 6.1426 9.9707 2.8982 18 6 7.2267 10.7721 2.8840 19 1 8.2099 10.3533 3.0400 20 6 7.0794 12.1339 2.6692 21 7 5.8817 12.6442 2.4796 22 14 8.5815 13.2443 2.6503 23 1 9.8013 12.4312 2.8870 24 1 8.6835 13.9164 1.3300 25 1 8.4536 14.2682 3.7183 26 6 5.2605 7.8097 3.3606 27 6 2.2622 2.0711 1.1963 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0819 1.5613 -2.1325 34 1 2.9006 3.8820 -2.1398 35 1 3.3042 5.0538 -0.0132 36 1 2.3862 3.8720 3.1703 37 1 4.5376 4.7767 4.5644 38 1 3.4279 6.1161 4.1869 39 1 6.9156 4.9713 4.1210 40 1 8.8391 6.4860 3.8699 41 1 8.4793 8.8484 3.2804 42 1 5.7787 13.5970 2.3297 43 1 4.2560 8.1799 3.2184 44 1 2.0828 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089590455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:38 Heat of formation + Delta-G solvation = -20.860317 kcal Electronic energy + Delta-G solvation = -25622.588896 eV Core-core repulsion = 21891.161421 eV Total energy + Delta-G solvation = -3731.427475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63027 -39.19624 -38.56028 -36.51287 -35.17565 -33.80238 -32.40369 -32.02530 -30.20157 -29.39269 -29.00134 -26.97591 -25.22695 -24.25913 -22.79734 -22.05796 -21.57706 -20.71512 -19.91704 -17.92167 -17.44408 -16.91855 -16.77070 -16.27176 -15.72856 -15.17551 -14.93116 -14.64418 -14.34399 -14.32844 -14.03942 -13.79799 -13.67606 -13.44416 -13.38588 -13.23545 -12.68210 -12.44487 -12.40846 -12.09618 -11.84038 -11.76305 -11.53287 -11.35135 -11.26030 -11.08091 -10.82696 -10.76044 -10.59957 -10.40781 -10.34769 -9.72366 -9.30647 -8.86328 -8.81047 -8.20269 -8.05021 -7.19191 -6.41232 -4.00099 1.18873 1.28269 2.09139 2.41573 2.64999 3.04785 3.15650 3.15989 3.21690 3.68909 3.99491 4.49550 4.52058 4.64532 4.81450 4.88747 5.03604 5.06185 5.08199 5.12460 5.18190 5.24094 5.28969 5.43142 5.46929 5.48041 5.59402 5.65876 5.72105 5.76447 5.84673 5.94054 5.95718 6.19560 6.23612 6.29933 6.36112 6.47488 6.49741 6.67925 6.93891 6.97502 7.10415 7.27863 7.30824 7.39869 7.46921 7.85029 8.04013 8.15830 9.04703 9.75566 10.77117 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023206 B = 0.002184 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.277890 B =12817.204992 C =13372.114954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.069 4.069 4 C -0.137 4.137 5 C -0.098 4.098 6 C -0.125 4.125 7 C 0.153 3.847 8 N -0.682 5.682 9 C 0.513 3.487 10 O -0.497 6.497 11 C -0.091 4.091 12 C -0.036 4.036 13 C -0.195 4.195 14 C -0.075 4.075 15 C -0.229 4.229 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.174 4.174 27 C -0.147 4.147 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.409 0.591 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.114 0.886 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 -22.845 -0.577 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.069 4.069 4 C -0.156 4.156 5 C -0.117 4.117 6 C -0.145 4.145 7 C 0.059 3.941 8 N -0.329 5.329 9 C 0.300 3.700 10 O -0.369 6.369 11 C -0.131 4.131 12 C -0.036 4.036 13 C -0.214 4.214 14 C -0.093 4.093 15 C -0.248 4.248 16 C 0.101 3.899 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.193 4.193 27 C -0.168 4.168 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.245 0.755 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.030 -22.224 -1.333 24.025 hybrid contribution 0.567 0.491 0.359 0.832 sum -8.463 -21.733 -0.974 23.343 Atomic orbital electron populations 1.21747 0.94721 1.01599 1.02304 1.20524 0.96144 0.92580 1.02814 1.19621 0.98729 0.95967 0.92604 1.20980 1.01957 0.95294 0.97373 1.21078 0.98044 0.94654 0.97915 1.21388 1.00728 1.01484 0.90881 1.17763 0.99104 0.91223 0.85997 1.43654 1.32527 1.43925 1.12757 1.21012 0.78939 0.78253 0.91753 1.90763 1.48736 1.58672 1.38737 1.20586 0.99282 0.99109 0.94128 1.18620 0.92765 0.92382 0.99880 1.20350 0.92063 0.98588 1.10447 1.20685 0.97630 0.93237 0.97750 1.21190 0.97251 0.96419 1.09990 1.19271 0.92737 0.86017 0.91887 1.83975 1.35466 1.13808 1.75077 1.21367 0.85929 0.88339 1.51007 0.89061 1.25283 0.98384 0.96268 0.96674 1.70053 1.21596 1.13248 1.45030 0.85649 0.79905 0.79648 0.78228 1.19118 1.20187 1.20177 1.19943 0.97482 0.92467 1.09430 1.20716 1.05129 0.92694 0.98226 0.92496 0.92486 0.92551 0.90996 0.91125 0.86270 0.85744 0.84181 0.75548 0.88036 0.87897 0.87934 0.87448 0.85585 0.92150 0.86795 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.08 -0.57 6.06 -27.89 -0.17 -0.74 16 3 C -0.07 -0.65 5.13 -104.65 -0.54 -1.18 16 4 C -0.14 -1.37 9.70 -39.55 -0.38 -1.75 16 5 C -0.10 -1.14 10.04 -39.61 -0.40 -1.54 16 6 C -0.12 -1.72 8.69 -39.39 -0.34 -2.06 16 7 C 0.15 1.87 6.29 -83.69 -0.53 1.34 16 8 N -0.68 -7.44 5.34 -9.86 -0.05 -7.49 16 9 C 0.51 7.34 7.67 -10.99 -0.08 7.26 16 10 O -0.50 -9.47 13.49 5.55 0.07 -9.39 16 11 C -0.09 -1.17 5.83 -29.04 -0.17 -1.34 16 12 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 13 C -0.20 -3.53 9.70 -39.53 -0.38 -3.91 16 14 C -0.07 -1.44 10.04 -39.60 -0.40 -1.84 16 15 C -0.23 -5.20 9.17 -39.39 -0.36 -5.56 16 16 C 0.15 3.86 6.65 -39.11 -0.26 3.60 16 17 O -0.18 -5.26 9.76 0.06 0.00 -5.26 16 18 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 22 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 26 C -0.17 -3.79 9.65 -39.39 -0.38 -4.17 16 27 C -0.15 -1.46 9.62 -39.39 -0.38 -1.84 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.14 2.26 6.25 -52.49 -0.33 1.93 16 36 H 0.41 2.86 8.82 -40.82 -0.36 2.50 16 37 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -34.81 375.94 -9.12 -43.93 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.88 Total: 6.89 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -4.66 Total: -25.25 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.71 Total: -32.48 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.65 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.81 -9.12 -43.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089590455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.071 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds