Wall clock time and date at job start Tue Mar 31 2020 14:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47063 * 2 1 4 4 C 1.38311 * 119.96493 * 270.01895 * 3 2 1 5 5 C 1.38260 * 120.14010 * 179.97438 * 4 3 2 6 6 C 1.38135 * 120.07252 * 359.72306 * 5 4 3 7 7 C 1.38851 * 119.92499 * 0.55200 * 6 5 4 8 8 N 1.39929 * 120.06803 * 179.71768 * 7 6 5 9 9 C 1.34775 * 120.00092 * 324.64832 * 8 7 6 10 10 O 1.21290 * 119.99713 * 4.51815 * 9 8 7 11 11 C 1.50702 * 120.00034 * 184.51436 * 9 8 7 12 12 C 1.50692 * 109.47233 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96402 * 270.02324 * 12 11 9 14 14 C 1.38278 * 120.13889 * 179.97438 * 13 12 11 15 15 C 1.38134 * 120.06628 * 359.67917 * 14 13 12 16 16 C 1.38855 * 119.92972 * 0.59545 * 15 14 13 17 17 O 1.35752 * 120.06477 * 179.69434 * 16 15 14 18 18 C 1.34825 * 117.00401 * 354.36013 * 17 16 15 19 19 H 1.08001 * 120.00022 * 5.02072 * 18 17 16 20 20 C 1.38654 * 120.00134 * 185.01712 * 18 17 16 21 21 N 1.31557 * 119.99832 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47482 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46603 * 120.00633 * 22 20 18 25 25 H 1.48505 * 109.47143 * 240.00069 * 22 20 18 26 26 C 1.38085 * 119.96839 * 89.99873 * 12 11 9 27 27 C 1.38090 * 119.96607 * 89.99948 * 3 2 1 28 28 H 1.09002 * 109.47081 * 60.00330 * 1 2 3 29 29 H 1.09007 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47489 * 300.00206 * 1 2 3 31 31 H 1.09001 * 109.47393 * 239.99960 * 2 1 3 32 32 H 1.09002 * 109.47081 * 119.99669 * 2 1 3 33 33 H 1.08000 * 119.92427 * 359.95590 * 4 3 2 34 34 H 1.08000 * 119.96049 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.03438 * 180.27804 * 6 5 4 36 36 H 0.96998 * 119.99376 * 144.63858 * 8 7 6 37 37 H 1.08994 * 109.46882 * 59.99931 * 11 9 8 38 38 H 1.09000 * 109.47172 * 300.00253 * 11 9 8 39 39 H 1.08002 * 119.93052 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.96874 * 179.97438 * 14 13 12 41 41 H 1.08003 * 120.03111 * 180.31580 * 15 14 13 42 42 H 0.97002 * 119.99576 * 179.97438 * 21 20 18 43 43 H 1.07993 * 120.03174 * 0.04735 * 26 12 11 44 44 H 1.07996 * 120.03567 * 0.04106 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0722 -1.1982 5 6 2.7225 3.3759 -1.2025 6 6 2.9489 4.0340 -0.0092 7 6 2.7245 3.3808 1.1954 8 7 2.9585 4.0426 2.4059 9 6 3.9787 4.9171 2.5097 10 8 4.6431 5.1923 1.5330 11 6 4.2939 5.5529 3.8391 12 6 5.4689 6.4837 3.6848 13 6 6.7552 6.0088 3.8675 14 6 7.8360 6.8596 3.7262 15 6 7.6344 8.1856 3.3955 16 6 6.3442 8.6666 3.2171 17 8 6.1426 9.9707 2.8982 18 6 7.2267 10.7721 2.8840 19 1 8.2099 10.3533 3.0400 20 6 7.0794 12.1339 2.6692 21 7 5.8817 12.6442 2.4796 22 14 8.5815 13.2443 2.6503 23 1 9.8013 12.4312 2.8870 24 1 8.6835 13.9164 1.3300 25 1 8.4536 14.2682 3.7183 26 6 5.2605 7.8097 3.3606 27 6 2.2622 2.0711 1.1963 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0819 1.5613 -2.1325 34 1 2.9006 3.8820 -2.1398 35 1 3.3042 5.0538 -0.0132 36 1 2.3862 3.8720 3.1703 37 1 4.5376 4.7767 4.5644 38 1 3.4279 6.1161 4.1869 39 1 6.9156 4.9713 4.1210 40 1 8.8391 6.4860 3.8699 41 1 8.4793 8.8484 3.2804 42 1 5.7787 13.5970 2.3297 43 1 4.2560 8.1799 3.2184 44 1 2.0828 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089590455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:37 Heat of formation + Delta-G solvation = -42.059520 kcal Electronic energy + Delta-G solvation = -25623.508162 eV Core-core repulsion = 21891.161421 eV Total energy + Delta-G solvation = -3732.346741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.67384 -40.73731 -39.73611 -38.21729 -36.14024 -34.58388 -34.34149 -33.49510 -31.18422 -30.80773 -30.03341 -28.32113 -27.24704 -24.93790 -23.85300 -23.25320 -22.95371 -22.13879 -20.91479 -19.57021 -18.93417 -18.41104 -17.81242 -17.16472 -16.86152 -16.67520 -16.26316 -16.12130 -15.72672 -15.59783 -15.39391 -14.98168 -14.83297 -14.49537 -14.38871 -14.31904 -14.01994 -14.00629 -13.61450 -13.26811 -12.99226 -12.92276 -12.66655 -12.50206 -12.47484 -12.38863 -12.23932 -12.09392 -11.94526 -11.68962 -11.32077 -11.21769 -10.88062 -10.80310 -9.70067 -9.65651 -9.09875 -8.99192 -8.48388 -6.16841 0.30415 0.43319 0.49908 0.74255 1.33009 1.41794 1.51904 1.59627 2.07081 2.16597 2.83061 2.83919 3.15858 3.41802 3.72692 3.83781 3.93331 4.03254 4.09290 4.23945 4.30372 4.36304 4.40907 4.41966 4.54194 4.57277 4.61051 4.62673 4.68692 4.72524 4.75961 5.04674 5.11028 5.12080 5.13785 5.16307 5.29040 5.38647 5.40339 5.46960 5.59929 5.63488 5.70680 5.71195 5.73501 6.01708 6.10932 6.21563 6.45030 6.96256 7.16916 7.77836 8.75385 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023206 B = 0.002184 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.277890 B =12817.204992 C =13372.114954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.067 4.067 4 C -0.137 4.137 5 C -0.112 4.112 6 C -0.157 4.157 7 C 0.136 3.864 8 N -0.662 5.662 9 C 0.513 3.487 10 O -0.555 6.555 11 C -0.087 4.087 12 C -0.027 4.027 13 C -0.179 4.179 14 C -0.075 4.075 15 C -0.246 4.246 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.021 2.979 23 H -0.252 1.252 24 H -0.269 1.269 25 H -0.265 1.265 26 C -0.192 4.192 27 C -0.140 4.140 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.430 0.570 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.117 0.883 42 H 0.272 0.728 43 H 0.107 0.893 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.122 -27.135 0.895 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.068 4.068 4 C -0.156 4.156 5 C -0.130 4.130 6 C -0.177 4.177 7 C 0.042 3.958 8 N -0.309 5.309 9 C 0.302 3.698 10 O -0.432 6.432 11 C -0.126 4.126 12 C -0.028 4.028 13 C -0.197 4.197 14 C -0.092 4.092 15 C -0.265 4.265 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.223 4.223 21 N -0.560 5.560 22 Si 0.840 3.160 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.190 1.190 26 C -0.211 4.211 27 C -0.160 4.160 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.122 0.878 36 H 0.269 0.731 37 H 0.168 0.832 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.924 -26.599 0.181 28.057 hybrid contribution 0.410 1.421 -0.087 1.482 sum -8.513 -25.178 0.094 26.579 Atomic orbital electron populations 1.21739 0.94045 1.02486 1.01981 1.20587 0.96569 0.90667 1.03984 1.20043 0.97350 0.97267 0.92122 1.21273 1.00929 0.94460 0.98913 1.21221 0.98578 0.95712 0.97508 1.21279 1.03006 1.00550 0.92881 1.17917 0.99993 0.92282 0.85621 1.43397 1.31690 1.42612 1.13218 1.21227 0.78995 0.78181 0.91425 1.90769 1.51090 1.60752 1.40553 1.20702 0.98029 0.99460 0.94385 1.19160 0.95312 0.91462 0.96875 1.20984 0.91338 1.00349 1.07075 1.21139 1.00175 0.91717 0.96217 1.21302 0.95993 0.98183 1.11015 1.19887 0.94943 0.85312 0.93792 1.83934 1.36311 1.15810 1.78086 1.21861 0.86450 0.89147 1.51481 0.88245 1.26628 1.02130 0.97587 0.95917 1.70199 1.24416 1.13826 1.47587 0.84506 0.75696 0.77191 0.78632 1.17522 1.19417 1.19022 1.20233 0.96555 0.94101 1.10217 1.21010 1.03664 0.91550 0.99793 0.93064 0.91029 0.92695 0.90061 0.89812 0.84043 0.85357 0.87762 0.73052 0.83193 0.85455 0.83455 0.83739 0.86518 0.91854 0.87490 0.83017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 71.98 0.71 -0.55 16 2 C -0.08 -0.80 6.06 29.85 0.18 -0.62 16 3 C -0.07 -1.08 5.13 -19.88 -0.10 -1.18 16 4 C -0.14 -2.52 9.70 22.29 0.22 -2.30 16 5 C -0.11 -2.64 10.04 22.25 0.22 -2.42 16 6 C -0.16 -4.49 8.69 22.39 0.19 -4.29 16 7 C 0.14 3.15 6.29 38.15 0.24 3.39 16 8 N -0.66 -13.00 5.34 -303.50 -1.62 -14.62 16 9 C 0.51 13.90 7.67 87.66 0.67 14.57 16 10 O -0.56 -21.48 13.49 -3.06 -0.04 -21.52 16 11 C -0.09 -1.93 5.83 29.10 0.17 -1.76 16 12 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 13 C -0.18 -5.88 9.70 22.30 0.22 -5.66 16 14 C -0.07 -2.74 10.04 22.25 0.22 -2.52 16 15 C -0.25 -11.45 9.17 22.39 0.21 -11.25 16 16 C 0.11 5.87 6.65 22.58 0.15 6.02 16 17 O -0.23 -14.84 9.76 -22.72 -0.22 -15.07 16 18 C -0.41 -25.15 9.49 67.92 0.64 -24.50 16 19 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 20 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 21 N -0.92 -58.34 13.67 21.61 0.30 -58.04 16 22 Si 1.02 44.41 29.55 68.60 2.03 46.43 16 23 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 C -0.19 -8.67 9.65 22.39 0.22 -8.45 16 27 C -0.14 -2.38 9.62 22.39 0.22 -2.16 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 32 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 33 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.10 3.70 6.25 -2.91 -0.02 3.69 16 36 H 0.43 4.50 8.82 -92.71 -0.82 3.68 16 37 H 0.15 1.97 8.09 -2.39 -0.02 1.95 16 38 H 0.13 2.29 8.08 -2.39 -0.02 2.27 16 39 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 41 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 42 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 44 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -85.22 375.94 5.40 -79.82 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.21 Total: 28.79 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 4.76 Total: -45.78 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -1.32 Total: -72.67 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.26 Total: -36.59 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -85.22 5.40 -79.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089590455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.757 kcal (2) G-P(sol) polarization free energy of solvation -85.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds