Wall clock time and date at job start Tue Mar 31 2020 14:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46981 * 2 1 4 4 C 1.38277 * 119.93083 * 89.99926 * 3 2 1 5 5 C 1.38116 * 120.07281 * 179.97438 * 4 3 2 6 6 C 1.38869 * 119.92239 * 0.02562 * 5 4 3 7 7 N 1.39936 * 120.06420 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99895 * 33.35303 * 7 6 5 9 9 O 1.21291 * 120.00234 * 5.34223 * 8 7 6 10 10 C 1.50704 * 119.99758 * 185.34096 * 8 7 6 11 11 C 1.50704 * 109.47134 * 180.02562 * 10 8 7 12 12 C 1.38321 * 119.96090 * 270.02352 * 11 10 8 13 13 C 1.38285 * 120.13745 * 180.02562 * 12 11 10 14 14 C 1.38123 * 120.06403 * 359.67343 * 13 12 11 15 15 C 1.38851 * 119.93507 * 0.59965 * 14 13 12 16 16 O 1.35748 * 120.07398 * 179.69802 * 15 14 13 17 17 C 1.34830 * 116.99766 * 353.91205 * 16 15 14 18 18 H 1.07999 * 119.99744 * 354.61975 * 17 16 15 19 19 C 1.38653 * 120.00176 * 174.60930 * 17 16 15 20 20 N 1.31560 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00064 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47076 * 90.00590 * 21 19 17 23 23 H 1.48499 * 109.46929 * 210.00323 * 21 19 17 24 24 H 1.48495 * 109.46955 * 330.00391 * 21 19 17 25 25 C 1.38071 * 119.96601 * 89.99479 * 11 10 8 26 26 C 1.38864 * 119.86733 * 0.27007 * 6 5 4 27 27 C 1.38117 * 119.92364 * 359.47330 * 26 6 5 28 28 H 1.09003 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47136 * 299.99429 * 1 2 3 30 30 H 1.08996 * 109.47338 * 59.99897 * 1 2 3 31 31 H 1.09001 * 109.47003 * 240.00033 * 2 1 3 32 32 H 1.08996 * 109.47338 * 120.00103 * 2 1 3 33 33 H 1.08004 * 119.96575 * 0.02664 * 4 3 2 34 34 H 1.07996 * 120.03696 * 179.97438 * 5 4 3 35 35 H 0.96996 * 119.99560 * 213.35544 * 7 6 5 36 36 H 1.08987 * 109.46938 * 59.99789 * 10 8 7 37 37 H 1.09001 * 109.46672 * 299.99968 * 10 8 7 38 38 H 1.08002 * 119.93505 * 359.97395 * 12 11 10 39 39 H 1.07997 * 119.96095 * 179.97438 * 13 12 11 40 40 H 1.08001 * 120.03282 * 180.31801 * 14 13 12 41 41 H 0.96991 * 120.00446 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.03936 * 0.04669 * 25 11 10 43 43 H 1.07996 * 120.04154 * 179.72957 * 26 6 5 44 44 H 1.08001 * 119.96082 * 180.25864 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0714 1.1983 5 6 2.7231 3.3734 1.2018 6 6 2.9550 4.0293 -0.0001 7 7 3.4225 5.3483 -0.0001 8 6 4.2528 5.7689 0.9746 9 8 4.6721 4.9811 1.7960 10 6 4.6604 7.2181 1.0438 11 6 5.5857 7.4244 2.2153 12 6 5.0676 7.7498 3.4558 13 6 5.9134 7.9404 4.5332 14 6 7.2783 7.7995 4.3748 15 6 7.8018 7.4785 3.1295 16 8 9.1432 7.3454 2.9693 17 6 9.9200 7.6606 4.0253 18 1 9.4766 8.0832 4.9148 19 6 11.2881 7.4422 3.9694 20 7 11.8283 6.9278 2.8857 21 14 12.3642 7.8784 5.4327 22 1 12.4652 6.7068 6.3395 23 1 13.7196 8.2536 4.9559 24 1 11.7632 9.0214 6.1657 25 6 6.9496 7.2876 2.0493 26 6 2.7173 3.3754 -1.2019 27 6 2.2615 2.0716 -1.1984 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0821 1.5605 2.1327 34 1 2.9021 3.8810 2.1380 35 1 3.1488 5.9597 -0.7016 36 1 3.7735 7.8394 1.1670 37 1 5.1733 7.4956 0.1228 38 1 4.0004 7.8562 3.5832 39 1 5.5058 8.1948 5.5004 40 1 7.9379 7.9434 5.2177 41 1 12.7854 6.7753 2.8464 42 1 7.3535 7.0338 1.0804 43 1 2.8925 3.8843 -2.1381 44 1 2.0804 1.5611 -2.1327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089600553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:42 Heat of formation + Delta-G solvation = -21.715694 kcal Electronic energy + Delta-G solvation = -25591.136909 eV Core-core repulsion = 21859.672342 eV Total energy + Delta-G solvation = -3731.464567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.61958 -39.19160 -38.56215 -36.52093 -35.35398 -33.26400 -32.35777 -31.95164 -31.04162 -29.31425 -28.75800 -26.92434 -25.23032 -23.95256 -23.10088 -21.81694 -21.48704 -20.75974 -20.14174 -18.05862 -17.47224 -17.02236 -16.84532 -15.87569 -15.67712 -15.18525 -14.90210 -14.53783 -14.32261 -14.24637 -13.96395 -13.88237 -13.57271 -13.50794 -13.38300 -13.32009 -12.77298 -12.59773 -12.39289 -12.23351 -11.83631 -11.55285 -11.52774 -11.27326 -11.24413 -11.06121 -10.84343 -10.74530 -10.59047 -10.40739 -10.29439 -9.76915 -9.33633 -9.01540 -8.80037 -8.09022 -8.04702 -7.19026 -6.40631 -3.99681 1.15215 1.31365 2.09572 2.41617 2.65533 3.05869 3.15627 3.17047 3.20948 3.69412 3.99898 4.51277 4.58980 4.64558 4.83377 4.87240 4.93885 5.03170 5.11384 5.16194 5.20338 5.28419 5.31410 5.40239 5.47630 5.52607 5.64139 5.66570 5.74561 5.76878 5.91785 5.92324 5.95649 6.19606 6.20336 6.24863 6.36481 6.43497 6.52941 6.68012 6.94178 6.95591 7.10792 7.27800 7.31237 7.39245 7.47087 7.85349 8.04172 8.16214 9.04990 9.75952 10.77646 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.002235 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.383332 B =12527.652270 C =13071.146531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.104 4.104 4 C -0.097 4.097 5 C -0.119 4.119 6 C 0.150 3.850 7 N -0.683 5.683 8 C 0.512 3.488 9 O -0.496 6.496 10 C -0.091 4.091 11 C -0.036 4.036 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.229 4.229 15 C 0.154 3.846 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.174 4.174 26 C -0.147 4.147 27 C -0.099 4.099 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.409 0.591 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.132 -6.113 -7.868 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.105 4.105 4 C -0.116 4.116 5 C -0.139 4.139 6 C 0.056 3.944 7 N -0.329 5.329 8 C 0.300 3.700 9 O -0.368 6.368 10 C -0.131 4.131 11 C -0.037 4.037 12 C -0.215 4.215 13 C -0.093 4.093 14 C -0.248 4.248 15 C 0.100 3.900 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.193 4.193 26 C -0.168 4.168 27 C -0.118 4.118 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.153 0.847 35 H 0.244 0.756 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.142 0.858 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.397 -6.743 -7.496 23.654 hybrid contribution 0.484 0.526 0.411 0.824 sum -20.913 -6.217 -7.086 22.939 Atomic orbital electron populations 1.21752 0.94913 1.01517 1.02160 1.20502 0.95984 0.92741 1.02787 1.19847 1.01067 0.96460 0.93144 1.20917 0.98749 0.94272 0.97629 1.21184 0.99309 0.95584 0.97800 1.17767 0.97408 0.85223 0.94032 1.43693 1.48467 1.10844 1.29894 1.21012 0.77338 0.91255 0.80444 1.90783 1.51662 1.55654 1.38670 1.20591 1.00555 0.92099 0.99880 1.18619 0.92175 0.99634 0.93228 1.20342 0.98097 1.10174 0.92925 1.20683 0.93099 0.98038 0.97495 1.21185 0.95465 1.10231 0.97938 1.19284 0.85313 0.92610 0.92746 1.83992 1.10979 1.74579 1.38718 1.21306 0.88433 1.42169 0.94757 0.89153 1.25286 0.96285 0.96597 0.98429 1.70040 1.12319 1.40783 1.26732 0.85718 0.78996 0.78958 0.79791 1.19906 1.20292 1.19214 1.19944 0.91575 1.09783 0.97990 1.20857 1.04226 0.95331 0.96382 1.20762 0.99523 0.93960 0.97536 0.92565 0.92570 0.92643 0.91184 0.91097 0.85915 0.84712 0.75552 0.87984 0.87963 0.87921 0.87449 0.85600 0.92083 0.86820 0.85810 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.10 -1.05 5.14 -104.59 -0.54 -1.58 16 4 C -0.10 -1.11 9.69 -39.61 -0.38 -1.49 16 5 C -0.12 -1.58 8.65 -39.39 -0.34 -1.92 16 6 C 0.15 1.82 6.28 -83.69 -0.53 1.30 16 7 N -0.68 -7.46 5.34 -9.86 -0.05 -7.51 16 8 C 0.51 7.36 7.56 -10.98 -0.08 7.28 16 9 O -0.50 -9.55 13.73 5.55 0.08 -9.47 16 10 C -0.09 -1.17 5.83 -29.03 -0.17 -1.34 16 11 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 12 C -0.20 -3.52 9.70 -39.53 -0.38 -3.90 16 13 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 14 C -0.23 -5.19 9.13 -39.40 -0.36 -5.55 16 15 C 0.15 3.87 6.65 -39.11 -0.26 3.61 16 16 O -0.18 -5.27 9.76 0.06 0.00 -5.27 16 17 C -0.39 -11.19 9.44 30.89 0.29 -10.89 16 18 H 0.09 2.40 5.30 -52.49 -0.28 2.12 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 21 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.17 -3.81 9.65 -39.39 -0.38 -4.19 16 26 C -0.15 -1.49 9.96 -39.39 -0.39 -1.88 16 27 C -0.10 -0.95 9.69 -39.61 -0.38 -1.33 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.14 2.02 6.42 -52.49 -0.34 1.68 16 35 H 0.41 2.85 8.82 -40.82 -0.36 2.49 16 36 H 0.10 0.97 8.08 -51.94 -0.42 0.55 16 37 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 38 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.13 2.84 5.72 -52.49 -0.30 2.54 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -35.14 376.28 -9.13 -44.27 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.90 Total: 6.76 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -4.66 Total: -25.26 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.71 Total: -32.63 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.08 Total: -14.74 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.14 -9.13 -44.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089600553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.552 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds