Wall clock time and date at job start Tue Mar 31 2020 14:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46981 * 2 1 4 4 C 1.38277 * 119.93083 * 89.99926 * 3 2 1 5 5 C 1.38116 * 120.07281 * 179.97438 * 4 3 2 6 6 C 1.38869 * 119.92239 * 0.02562 * 5 4 3 7 7 N 1.39936 * 120.06420 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99895 * 33.35303 * 7 6 5 9 9 O 1.21291 * 120.00234 * 5.34223 * 8 7 6 10 10 C 1.50704 * 119.99758 * 185.34096 * 8 7 6 11 11 C 1.50704 * 109.47134 * 180.02562 * 10 8 7 12 12 C 1.38321 * 119.96090 * 270.02352 * 11 10 8 13 13 C 1.38285 * 120.13745 * 180.02562 * 12 11 10 14 14 C 1.38123 * 120.06403 * 359.67343 * 13 12 11 15 15 C 1.38851 * 119.93507 * 0.59965 * 14 13 12 16 16 O 1.35748 * 120.07398 * 179.69802 * 15 14 13 17 17 C 1.34830 * 116.99766 * 353.91205 * 16 15 14 18 18 H 1.07999 * 119.99744 * 354.61975 * 17 16 15 19 19 C 1.38653 * 120.00176 * 174.60930 * 17 16 15 20 20 N 1.31560 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00064 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47076 * 90.00590 * 21 19 17 23 23 H 1.48499 * 109.46929 * 210.00323 * 21 19 17 24 24 H 1.48495 * 109.46955 * 330.00391 * 21 19 17 25 25 C 1.38071 * 119.96601 * 89.99479 * 11 10 8 26 26 C 1.38864 * 119.86733 * 0.27007 * 6 5 4 27 27 C 1.38117 * 119.92364 * 359.47330 * 26 6 5 28 28 H 1.09003 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47136 * 299.99429 * 1 2 3 30 30 H 1.08996 * 109.47338 * 59.99897 * 1 2 3 31 31 H 1.09001 * 109.47003 * 240.00033 * 2 1 3 32 32 H 1.08996 * 109.47338 * 120.00103 * 2 1 3 33 33 H 1.08004 * 119.96575 * 0.02664 * 4 3 2 34 34 H 1.07996 * 120.03696 * 179.97438 * 5 4 3 35 35 H 0.96996 * 119.99560 * 213.35544 * 7 6 5 36 36 H 1.08987 * 109.46938 * 59.99789 * 10 8 7 37 37 H 1.09001 * 109.46672 * 299.99968 * 10 8 7 38 38 H 1.08002 * 119.93505 * 359.97395 * 12 11 10 39 39 H 1.07997 * 119.96095 * 179.97438 * 13 12 11 40 40 H 1.08001 * 120.03282 * 180.31801 * 14 13 12 41 41 H 0.96991 * 120.00446 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.03936 * 0.04669 * 25 11 10 43 43 H 1.07996 * 120.04154 * 179.72957 * 26 6 5 44 44 H 1.08001 * 119.96082 * 180.25864 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0714 1.1983 5 6 2.7231 3.3734 1.2018 6 6 2.9550 4.0293 -0.0001 7 7 3.4225 5.3483 -0.0001 8 6 4.2528 5.7689 0.9746 9 8 4.6721 4.9811 1.7960 10 6 4.6604 7.2181 1.0438 11 6 5.5857 7.4244 2.2153 12 6 5.0676 7.7498 3.4558 13 6 5.9134 7.9404 4.5332 14 6 7.2783 7.7995 4.3748 15 6 7.8018 7.4785 3.1295 16 8 9.1432 7.3454 2.9693 17 6 9.9200 7.6606 4.0253 18 1 9.4766 8.0832 4.9148 19 6 11.2881 7.4422 3.9694 20 7 11.8283 6.9278 2.8857 21 14 12.3642 7.8784 5.4327 22 1 12.4652 6.7068 6.3395 23 1 13.7196 8.2536 4.9559 24 1 11.7632 9.0214 6.1657 25 6 6.9496 7.2876 2.0493 26 6 2.7173 3.3754 -1.2019 27 6 2.2615 2.0716 -1.1984 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0821 1.5605 2.1327 34 1 2.9021 3.8810 2.1380 35 1 3.1488 5.9597 -0.7016 36 1 3.7735 7.8394 1.1670 37 1 5.1733 7.4956 0.1228 38 1 4.0004 7.8562 3.5832 39 1 5.5058 8.1948 5.5004 40 1 7.9379 7.9434 5.2177 41 1 12.7854 6.7753 2.8464 42 1 7.3535 7.0338 1.0804 43 1 2.8925 3.8843 -2.1381 44 1 2.0804 1.5611 -2.1327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089600553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:41 Heat of formation + Delta-G solvation = -43.184374 kcal Electronic energy + Delta-G solvation = -25592.067861 eV Core-core repulsion = 21859.672342 eV Total energy + Delta-G solvation = -3732.395519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66105 -40.72995 -39.73568 -38.22048 -36.32119 -34.37467 -34.09834 -33.33080 -31.87140 -30.93866 -29.79884 -28.18984 -27.23812 -24.76733 -23.94658 -23.31101 -22.88212 -21.87677 -21.25966 -19.58519 -18.97989 -18.47355 -18.06677 -16.92396 -16.74005 -16.51918 -16.29060 -16.12025 -15.72836 -15.52640 -15.34926 -14.95058 -14.76889 -14.62673 -14.35990 -14.24890 -14.09504 -14.02403 -13.60908 -13.49328 -12.99789 -12.95791 -12.79602 -12.52603 -12.37141 -12.27034 -12.22784 -12.10668 -11.91926 -11.70226 -11.27555 -11.24236 -10.89913 -10.79892 -9.86276 -9.65975 -8.99295 -8.95790 -8.48083 -6.16624 0.28434 0.47108 0.50123 0.74413 1.32975 1.42977 1.51107 1.60316 2.08451 2.16959 2.83276 2.85775 3.16370 3.41636 3.72510 3.89427 3.92345 4.03519 4.09190 4.11382 4.30575 4.31777 4.41553 4.47823 4.54848 4.57082 4.60886 4.65005 4.66486 4.72842 4.81620 5.04702 5.07209 5.11518 5.11681 5.16557 5.29144 5.34805 5.39089 5.44171 5.56494 5.63534 5.71565 5.73602 5.73817 6.01474 6.10999 6.21937 6.46013 6.96382 7.17336 7.78084 8.75571 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.002235 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.383332 B =12527.652270 C =13071.146531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.105 4.105 4 C -0.112 4.112 5 C -0.143 4.143 6 C 0.127 3.873 7 N -0.662 5.662 8 C 0.512 3.488 9 O -0.556 6.556 10 C -0.087 4.087 11 C -0.028 4.028 12 C -0.179 4.179 13 C -0.075 4.075 14 C -0.245 4.245 15 C 0.110 3.890 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.252 1.252 25 C -0.192 4.192 26 C -0.143 4.143 27 C -0.101 4.101 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.430 0.570 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.272 0.728 42 H 0.107 0.893 43 H 0.152 0.848 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.383 -5.780 -8.581 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.105 4.105 4 C -0.131 4.131 5 C -0.164 4.164 6 C 0.033 3.967 7 N -0.309 5.309 8 C 0.302 3.698 9 O -0.432 6.432 10 C -0.126 4.126 11 C -0.028 4.028 12 C -0.198 4.198 13 C -0.092 4.092 14 C -0.265 4.265 15 C 0.060 3.940 16 O -0.141 6.141 17 C -0.489 4.489 18 H 0.117 0.883 19 C -0.223 4.223 20 N -0.560 5.560 21 Si 0.839 3.161 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.175 1.175 25 C -0.211 4.211 26 C -0.163 4.163 27 C -0.120 4.120 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.127 0.873 35 H 0.269 0.731 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.170 0.830 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -24.745 -6.384 -8.253 26.855 hybrid contribution 1.093 0.358 0.529 1.266 sum -23.652 -6.026 -7.724 25.601 Atomic orbital electron populations 1.21727 0.93945 1.02369 1.01984 1.20564 0.96743 0.91261 1.03446 1.20172 1.00044 0.97523 0.92794 1.21072 0.99249 0.93960 0.98794 1.21149 1.01080 0.96604 0.97526 1.17956 0.98512 0.85824 0.94429 1.43428 1.47086 1.10974 1.29434 1.21219 0.77056 0.91356 0.80214 1.90782 1.54140 1.57136 1.41180 1.20708 1.01398 0.91871 0.98632 1.19161 0.91262 0.96789 0.95612 1.20981 1.00214 1.06564 0.92008 1.21139 0.91571 0.96691 0.99845 1.21301 0.97275 1.11082 0.96800 1.19902 0.84543 0.94591 0.94968 1.83946 1.13047 1.77378 1.39761 1.21807 0.89255 1.42734 0.95109 0.88267 1.26636 0.97493 0.96277 1.01890 1.70190 1.12819 1.43465 1.29573 0.84566 0.76706 0.79261 0.75528 1.18992 1.19355 1.17510 1.20234 0.93281 1.10465 0.97120 1.21185 1.02917 0.95581 0.96587 1.21171 0.98435 0.93893 0.98468 0.91227 0.93299 0.92268 0.89841 0.91173 0.85481 0.87260 0.73070 0.83245 0.85411 0.83445 0.83727 0.86519 0.91855 0.87488 0.83030 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.08 -1.10 6.06 29.85 0.18 -0.92 16 3 C -0.10 -1.93 5.14 -19.84 -0.10 -2.03 16 4 C -0.11 -2.57 9.69 22.25 0.22 -2.35 16 5 C -0.14 -3.86 8.65 22.39 0.19 -3.67 16 6 C 0.13 2.91 6.28 38.15 0.24 3.15 16 7 N -0.66 -12.97 5.34 -303.50 -1.62 -14.59 16 8 C 0.51 13.89 7.56 87.66 0.66 14.55 16 9 O -0.56 -21.58 13.73 -3.06 -0.04 -21.62 16 10 C -0.09 -1.93 5.83 29.10 0.17 -1.77 16 11 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 12 C -0.18 -5.86 9.70 22.30 0.22 -5.64 16 13 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 14 C -0.25 -11.43 9.13 22.39 0.20 -11.22 16 15 C 0.11 5.84 6.65 22.58 0.15 5.99 16 16 O -0.23 -14.85 9.76 -22.72 -0.22 -15.07 16 17 C -0.41 -25.11 9.44 67.92 0.64 -24.47 16 18 H 0.10 5.56 5.30 -2.91 -0.02 5.54 16 19 C -0.03 -1.53 5.49 84.83 0.47 -1.06 16 20 N -0.92 -58.53 13.67 21.61 0.30 -58.23 16 21 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 25 C -0.19 -8.67 9.65 22.39 0.22 -8.45 16 26 C -0.14 -2.50 9.96 22.39 0.22 -2.28 16 27 C -0.10 -1.66 9.69 22.25 0.22 -1.44 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 32 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 33 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.11 3.45 6.42 -2.91 -0.02 3.43 16 35 H 0.43 4.46 8.82 -92.71 -0.82 3.64 16 36 H 0.15 1.97 8.08 -2.39 -0.02 1.95 16 37 H 0.13 2.27 8.08 -2.39 -0.02 2.25 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 40 H 0.12 5.51 5.72 -2.91 -0.02 5.49 16 41 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -85.41 376.28 5.39 -80.03 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.21 Total: 29.09 kcal Atomic # 6 Polarization: -50.78 SS G_CDS: 4.74 Total: -46.04 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -1.33 Total: -72.82 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.26 Total: -36.69 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -85.41 5.39 -80.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089600553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.841 kcal (2) G-P(sol) polarization free energy of solvation -85.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds