Wall clock time and date at job start Tue Mar 31 2020 13:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38237 * 120.00130 * 2 1 4 4 C 1.38229 * 119.99952 * 180.02562 * 3 2 1 5 5 C 1.38241 * 120.00029 * 359.97438 * 4 3 2 6 6 S 1.76198 * 120.00132 * 179.97438 * 5 4 3 7 7 O 1.42106 * 104.27564 * 333.92989 * 6 5 4 8 8 O 1.42094 * 104.27929 * 206.07116 * 6 5 4 9 9 C 1.81401 * 104.45205 * 89.99636 * 6 5 4 10 10 C 1.53000 * 109.47361 * 179.97438 * 9 6 5 11 11 C 1.53001 * 109.47057 * 180.02562 * 10 9 6 12 12 N 1.46897 * 109.46850 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99820 * 66.04976 * 12 11 10 14 14 C 1.46900 * 111.00093 * 189.99621 * 12 11 10 15 15 H 1.09000 * 109.46640 * 55.00217 * 14 12 11 16 16 C 1.52995 * 109.47259 * 295.00639 * 14 12 11 17 17 C 1.50695 * 109.47152 * 175.00052 * 14 12 11 18 18 H 1.07997 * 120.00446 * 5.59093 * 17 14 12 19 19 C 1.37883 * 119.99801 * 185.58411 * 17 14 12 20 20 N 1.31518 * 119.99963 * 198.29625 * 19 17 14 21 21 Si 1.86803 * 120.00001 * 18.57489 * 19 17 14 22 22 H 1.48502 * 109.46996 * 179.72365 * 21 19 17 23 23 H 1.48498 * 109.46761 * 299.71964 * 21 19 17 24 24 H 1.48496 * 109.47235 * 59.72150 * 21 19 17 25 25 C 1.38232 * 119.99964 * 0.25379 * 5 4 3 26 26 C 1.38233 * 119.99922 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46933 * 89.99471 * 1 2 3 28 28 H 1.08990 * 109.47450 * 210.00146 * 1 2 3 29 29 H 1.09001 * 109.46540 * 330.00216 * 1 2 3 30 30 H 1.07999 * 119.99643 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.00098 * 179.97438 * 4 3 2 32 32 H 1.09007 * 109.46472 * 60.00022 * 9 6 5 33 33 H 1.09003 * 109.47275 * 300.00757 * 9 6 5 34 34 H 1.08997 * 109.46889 * 60.00170 * 10 9 6 35 35 H 1.08999 * 109.47089 * 300.00606 * 10 9 6 36 36 H 1.09003 * 109.47150 * 60.00445 * 11 10 9 37 37 H 1.08997 * 109.46908 * 299.99852 * 11 10 9 38 38 H 1.08998 * 109.47081 * 183.95562 * 13 12 11 39 39 H 1.09008 * 109.46951 * 303.94762 * 13 12 11 40 40 H 1.08997 * 109.47794 * 63.94939 * 13 12 11 41 41 H 1.08997 * 109.47167 * 294.31181 * 16 14 12 42 42 H 1.09000 * 109.47599 * 54.31301 * 16 14 12 43 43 H 1.09005 * 109.47053 * 174.31555 * 16 14 12 44 44 H 0.97000 * 119.99730 * 355.23455 * 20 19 17 45 45 H 1.07999 * 120.00266 * 179.72844 * 25 5 4 46 46 H 1.08008 * 120.00059 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 16 6.0337 -0.0002 -0.0019 7 8 6.3837 1.2366 -0.6080 8 8 6.3836 -1.2374 -0.6068 9 6 6.4878 0.0007 1.7544 10 6 8.0120 0.0000 1.8871 11 6 8.3949 0.0001 3.3684 12 7 9.8584 -0.0011 3.4958 13 6 10.4322 1.2516 2.9865 14 6 10.2655 -0.2391 4.8870 15 1 9.8119 -1.1633 5.2453 16 6 9.8025 0.9283 5.7608 17 6 11.7663 -0.3557 4.9583 18 1 12.3645 -0.1731 4.0779 19 6 12.3756 -0.6954 6.1476 20 7 13.6566 -0.4542 6.3226 21 14 11.3835 -1.5053 7.5075 22 1 12.2659 -1.7738 8.6713 23 1 10.2803 -0.6013 7.9209 24 1 10.8156 -2.7845 7.0113 25 6 3.5805 -1.1972 -0.0053 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1206 2.1324 -0.0010 32 1 6.0811 -0.8891 2.2351 33 1 6.0812 0.8909 2.2344 34 1 8.4189 0.8895 1.4062 35 1 8.4181 -0.8904 1.4072 36 1 7.9880 -0.8897 3.8489 37 1 7.9888 0.8904 3.8486 38 1 11.5200 1.1961 3.0276 39 1 10.1150 1.4034 1.9547 40 1 10.0874 2.0847 3.5989 41 1 10.3327 1.8343 5.4674 42 1 8.7305 1.0765 5.6310 43 1 10.0146 0.7059 6.8066 44 1 14.1879 -0.1014 5.5917 45 1 4.1205 -2.1325 -0.0097 46 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091591761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:53 Heat of formation + Delta-G solvation = -44.522969 kcal Electronic energy + Delta-G solvation = -25062.211118 eV Core-core repulsion = 21465.201505 eV Total energy + Delta-G solvation = -3597.009613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.74103 -37.81027 -37.23817 -36.07735 -34.18031 -33.48282 -32.27689 -31.47007 -29.46284 -27.80790 -26.93109 -25.02054 -24.24145 -23.29367 -22.32501 -21.12812 -19.30526 -19.10114 -18.00810 -17.30570 -16.49996 -16.45732 -15.77768 -15.66787 -15.17960 -14.89663 -14.73686 -14.35852 -14.12003 -13.97320 -13.67307 -13.45084 -12.99566 -12.83175 -12.76148 -12.57227 -12.47717 -12.20292 -12.13513 -12.01980 -11.82596 -11.58571 -11.58054 -11.52338 -11.22443 -11.07258 -10.91819 -10.56969 -10.45540 -10.20795 -9.83843 -9.72800 -9.49365 -9.46591 -8.93882 -8.14762 -7.37261 -6.44791 -4.02302 -0.15294 0.43053 0.88355 2.69901 3.01729 3.35321 3.42849 3.59178 3.69337 3.92019 4.28276 4.28605 4.38042 4.48865 4.49332 4.57349 4.84884 4.88038 5.01091 5.03040 5.11684 5.16601 5.18146 5.28280 5.37089 5.46523 5.53099 5.59024 5.69211 5.73566 5.79018 5.99888 6.02249 6.09121 6.18908 6.28953 6.33277 6.40233 6.41995 6.64742 6.71794 6.96643 7.26564 7.69477 8.01170 8.31292 8.45773 8.98984 9.64547 10.96234 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.002415 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.405439 B =11590.168672 C =12091.915219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.035 4.035 3 C -0.144 4.144 4 C -0.020 4.020 5 C -0.665 4.665 6 S 2.494 3.506 7 O -0.938 6.938 8 O -0.935 6.935 9 C -0.597 4.597 10 C -0.113 4.113 11 C 0.059 3.941 12 N -0.528 5.528 13 C 0.030 3.970 14 C 0.186 3.814 15 H 0.031 0.969 16 C -0.188 4.188 17 C -0.587 4.587 18 H 0.064 0.936 19 C 0.029 3.971 20 N -0.907 5.907 21 Si 1.045 2.955 22 H -0.286 1.286 23 H -0.277 1.277 24 H -0.283 1.283 25 C -0.019 4.019 26 C -0.144 4.144 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.050 0.950 42 H 0.022 0.978 43 H 0.057 0.943 44 H 0.267 0.733 45 H 0.143 0.857 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.441 2.020 -11.433 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.035 4.035 3 C -0.163 4.163 4 C -0.039 4.039 5 C -0.751 4.751 6 S 2.675 3.325 7 O -0.935 6.935 8 O -0.933 6.933 9 C -0.728 4.728 10 C -0.152 4.152 11 C -0.071 4.071 12 N -0.251 5.251 13 C -0.118 4.118 14 C 0.079 3.921 15 H 0.049 0.951 16 C -0.247 4.247 17 C -0.626 4.626 18 H 0.083 0.917 19 C -0.176 4.176 20 N -0.541 5.541 21 Si 0.874 3.126 22 H -0.212 1.212 23 H -0.203 1.203 24 H -0.209 1.209 25 C -0.038 4.038 26 C -0.162 4.162 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.161 0.839 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.640 1.072 -10.899 28.803 hybrid contribution -1.178 1.272 -0.439 1.788 sum -27.818 2.344 -11.339 30.131 Atomic orbital electron populations 1.20943 0.90582 1.03483 1.03009 1.20296 0.96523 0.93372 0.93322 1.21193 0.94196 0.98027 1.02846 1.20989 0.94723 0.96803 0.91361 1.30679 1.26433 0.99424 1.18581 1.05544 0.73979 0.74822 0.78122 1.93566 1.81934 1.44543 1.73464 1.93572 1.81861 1.44389 1.73447 1.30267 1.07096 1.12058 1.23378 1.21440 0.88500 1.04426 1.00820 1.22021 0.91211 1.00648 0.93245 1.62245 1.05510 1.33912 1.23404 1.22325 1.01859 0.90268 0.97392 1.19645 0.97495 0.92651 0.82347 0.95091 1.22884 0.97276 1.02153 1.02363 1.21950 0.89778 1.52073 0.98751 0.91748 1.25687 0.97411 0.94901 0.99635 1.70864 1.07956 1.41840 1.33452 0.84053 0.75390 0.76954 0.76194 1.21193 1.20346 1.20905 1.21004 0.94725 0.96846 0.91234 1.21203 0.94204 0.98034 1.02788 0.90343 0.90899 0.90924 0.85041 0.84001 0.84513 0.84797 0.90241 0.89280 0.91053 0.95052 0.90484 0.93442 0.96249 0.93139 0.95919 0.92375 0.92261 0.83904 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.01 36.01 0.36 -0.17 16 2 C -0.04 -0.25 5.88 -104.62 -0.62 -0.86 16 3 C -0.14 -1.09 9.70 -39.58 -0.38 -1.47 16 4 C -0.02 -0.18 9.47 -39.58 -0.37 -0.55 16 5 C -0.67 -6.48 5.66 -39.58 -0.22 -6.71 16 6 S 2.49 27.62 5.16 -107.50 -0.55 27.07 16 7 O -0.94 -12.95 17.13 -57.54 -0.99 -13.93 16 8 O -0.94 -13.07 17.12 -57.54 -0.98 -14.06 16 9 C -0.60 -5.68 5.98 37.16 0.22 -5.46 16 10 C -0.11 -1.50 5.15 -26.73 -0.14 -1.64 16 11 C 0.06 0.95 4.41 -3.82 -0.02 0.93 16 12 N -0.53 -10.86 4.74 -236.29 -1.12 -11.98 16 13 C 0.03 0.58 8.70 60.07 0.52 1.10 16 14 C 0.19 4.37 1.93 -68.87 -0.13 4.23 16 15 H 0.03 0.74 6.67 -51.93 -0.35 0.39 16 16 C -0.19 -4.06 8.12 37.15 0.30 -3.76 16 17 C -0.59 -16.23 8.31 -34.44 -0.29 -16.52 16 18 H 0.06 1.93 6.78 -52.49 -0.36 1.57 16 19 C 0.03 0.82 5.34 -17.82 -0.10 0.72 16 20 N -0.91 -27.59 13.70 55.43 0.76 -26.83 16 21 Si 1.04 24.85 26.46 -169.99 -4.50 20.35 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.05 5.53 56.52 0.31 -5.74 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.02 -0.17 9.47 -39.58 -0.37 -0.55 16 26 C -0.14 -1.09 9.70 -39.58 -0.38 -1.47 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 29 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 30 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.14 1.09 7.57 -52.49 -0.40 0.69 16 32 H 0.14 1.02 8.14 -51.92 -0.42 0.59 16 33 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.08 1.04 6.47 -51.93 -0.34 0.70 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 37 H 0.03 0.48 6.81 -51.93 -0.35 0.13 16 38 H 0.08 1.67 6.43 -51.93 -0.33 1.33 16 39 H 0.05 0.78 6.30 -51.92 -0.33 0.46 16 40 H 0.02 0.36 6.41 -51.93 -0.33 0.03 16 41 H 0.05 1.11 6.71 -51.93 -0.35 0.76 16 42 H 0.02 0.42 6.49 -51.93 -0.34 0.08 16 43 H 0.06 1.30 4.88 -51.93 -0.25 1.04 16 44 H 0.27 8.12 8.73 -40.82 -0.36 7.77 16 45 H 0.14 1.11 7.56 -52.49 -0.40 0.72 16 46 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -35.29 372.55 -10.54 -45.84 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.15 Total: 0.12 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: -1.62 Total: -32.19 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.36 Total: -38.81 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -1.97 Total: -27.99 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -4.50 Total: 20.35 kcal Atomic # 16 Polarization: 27.62 SS G_CDS: -0.55 Total: 27.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.29 -10.54 -45.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091591761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.313 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds