Wall clock time and date at job start Tue Mar 31 2020 13:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38237 * 120.00130 * 2 1 4 4 C 1.38229 * 119.99952 * 180.02562 * 3 2 1 5 5 C 1.38241 * 120.00029 * 359.97438 * 4 3 2 6 6 S 1.76198 * 120.00132 * 179.97438 * 5 4 3 7 7 O 1.42106 * 104.27564 * 333.92989 * 6 5 4 8 8 O 1.42094 * 104.27929 * 206.07116 * 6 5 4 9 9 C 1.81401 * 104.45205 * 89.99636 * 6 5 4 10 10 C 1.53000 * 109.47361 * 179.97438 * 9 6 5 11 11 C 1.53001 * 109.47057 * 180.02562 * 10 9 6 12 12 N 1.46897 * 109.46850 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99820 * 66.04976 * 12 11 10 14 14 C 1.46900 * 111.00093 * 189.99621 * 12 11 10 15 15 H 1.09000 * 109.46640 * 55.00217 * 14 12 11 16 16 C 1.52995 * 109.47259 * 295.00639 * 14 12 11 17 17 C 1.50695 * 109.47152 * 175.00052 * 14 12 11 18 18 H 1.07997 * 120.00446 * 5.59093 * 17 14 12 19 19 C 1.37883 * 119.99801 * 185.58411 * 17 14 12 20 20 N 1.31518 * 119.99963 * 198.29625 * 19 17 14 21 21 Si 1.86803 * 120.00001 * 18.57489 * 19 17 14 22 22 H 1.48502 * 109.46996 * 179.72365 * 21 19 17 23 23 H 1.48498 * 109.46761 * 299.71964 * 21 19 17 24 24 H 1.48496 * 109.47235 * 59.72150 * 21 19 17 25 25 C 1.38232 * 119.99964 * 0.25379 * 5 4 3 26 26 C 1.38233 * 119.99922 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46933 * 89.99471 * 1 2 3 28 28 H 1.08990 * 109.47450 * 210.00146 * 1 2 3 29 29 H 1.09001 * 109.46540 * 330.00216 * 1 2 3 30 30 H 1.07999 * 119.99643 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.00098 * 179.97438 * 4 3 2 32 32 H 1.09007 * 109.46472 * 60.00022 * 9 6 5 33 33 H 1.09003 * 109.47275 * 300.00757 * 9 6 5 34 34 H 1.08997 * 109.46889 * 60.00170 * 10 9 6 35 35 H 1.08999 * 109.47089 * 300.00606 * 10 9 6 36 36 H 1.09003 * 109.47150 * 60.00445 * 11 10 9 37 37 H 1.08997 * 109.46908 * 299.99852 * 11 10 9 38 38 H 1.08998 * 109.47081 * 183.95562 * 13 12 11 39 39 H 1.09008 * 109.46951 * 303.94762 * 13 12 11 40 40 H 1.08997 * 109.47794 * 63.94939 * 13 12 11 41 41 H 1.08997 * 109.47167 * 294.31181 * 16 14 12 42 42 H 1.09000 * 109.47599 * 54.31301 * 16 14 12 43 43 H 1.09005 * 109.47053 * 174.31555 * 16 14 12 44 44 H 0.97000 * 119.99730 * 355.23455 * 20 19 17 45 45 H 1.07999 * 120.00266 * 179.72844 * 25 5 4 46 46 H 1.08008 * 120.00059 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 16 6.0337 -0.0002 -0.0019 7 8 6.3837 1.2366 -0.6080 8 8 6.3836 -1.2374 -0.6068 9 6 6.4878 0.0007 1.7544 10 6 8.0120 0.0000 1.8871 11 6 8.3949 0.0001 3.3684 12 7 9.8584 -0.0011 3.4958 13 6 10.4322 1.2516 2.9865 14 6 10.2655 -0.2391 4.8870 15 1 9.8119 -1.1633 5.2453 16 6 9.8025 0.9283 5.7608 17 6 11.7663 -0.3557 4.9583 18 1 12.3645 -0.1731 4.0779 19 6 12.3756 -0.6954 6.1476 20 7 13.6566 -0.4542 6.3226 21 14 11.3835 -1.5053 7.5075 22 1 12.2659 -1.7738 8.6713 23 1 10.2803 -0.6013 7.9209 24 1 10.8156 -2.7845 7.0113 25 6 3.5805 -1.1972 -0.0053 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1206 2.1324 -0.0010 32 1 6.0811 -0.8891 2.2351 33 1 6.0812 0.8909 2.2344 34 1 8.4189 0.8895 1.4062 35 1 8.4181 -0.8904 1.4072 36 1 7.9880 -0.8897 3.8489 37 1 7.9888 0.8904 3.8486 38 1 11.5200 1.1961 3.0276 39 1 10.1150 1.4034 1.9547 40 1 10.0874 2.0847 3.5989 41 1 10.3327 1.8343 5.4674 42 1 8.7305 1.0765 5.6310 43 1 10.0146 0.7059 6.8066 44 1 14.1879 -0.1014 5.5917 45 1 4.1205 -2.1325 -0.0097 46 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091591761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:52 Heat of formation + Delta-G solvation = -69.904442 kcal Electronic energy + Delta-G solvation = -25063.311741 eV Core-core repulsion = 21465.201505 eV Total energy + Delta-G solvation = -3598.110236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.29861 -39.36754 -38.19339 -37.03549 -35.61608 -34.11984 -33.98997 -32.03910 -31.16063 -28.42097 -28.12545 -26.88872 -25.74043 -23.86434 -23.03089 -22.34698 -20.91118 -20.02459 -19.36724 -18.79134 -17.50130 -17.31705 -16.76404 -16.50889 -16.29939 -15.87591 -15.76791 -15.39906 -15.21781 -15.05160 -14.75292 -14.51999 -14.44880 -14.05221 -13.60141 -13.31196 -13.26134 -13.21005 -13.12647 -13.11409 -13.08498 -13.05355 -12.97333 -12.71798 -12.47706 -12.29124 -12.10044 -11.86434 -11.71471 -11.64954 -11.53738 -11.31756 -10.98662 -10.29628 -10.06070 -10.05295 -8.96468 -8.70072 -6.28466 -0.97179 -0.19900 0.30206 1.46422 1.56407 1.73849 1.91281 2.40055 2.52299 2.87480 3.11323 3.13361 3.22937 3.71596 3.77683 3.83512 3.86246 3.95406 4.05844 4.26820 4.35426 4.40553 4.44613 4.52470 4.56998 4.64403 4.67010 4.69881 4.71323 4.79115 4.79153 4.85630 5.00077 5.00780 5.02087 5.09484 5.09898 5.16173 5.24217 5.24383 5.48528 5.53073 5.84570 5.87975 6.09086 6.28428 6.60741 6.76616 7.48530 8.69010 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.002415 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.405439 B =11590.168672 C =12091.915219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.037 4.037 3 C -0.150 4.150 4 C -0.036 4.036 5 C -0.671 4.671 6 S 2.501 3.499 7 O -0.973 6.973 8 O -0.974 6.974 9 C -0.581 4.581 10 C -0.118 4.118 11 C 0.056 3.944 12 N -0.549 5.549 13 C 0.035 3.965 14 C 0.185 3.815 15 H 0.037 0.963 16 C -0.180 4.180 17 C -0.587 4.587 18 H 0.022 0.978 19 C -0.026 4.026 20 N -0.942 5.942 21 Si 1.085 2.915 22 H -0.293 1.293 23 H -0.240 1.240 24 H -0.265 1.265 25 C -0.036 4.036 26 C -0.149 4.149 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.026 0.974 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.249 0.751 45 H 0.148 0.852 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.968 1.988 -10.565 33.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.037 4.037 3 C -0.168 4.168 4 C -0.055 4.055 5 C -0.760 4.760 6 S 2.687 3.313 7 O -0.971 6.971 8 O -0.971 6.971 9 C -0.713 4.713 10 C -0.157 4.157 11 C -0.073 4.073 12 N -0.272 5.272 13 C -0.113 4.113 14 C 0.077 3.923 15 H 0.055 0.945 16 C -0.239 4.239 17 C -0.625 4.625 18 H 0.040 0.960 19 C -0.224 4.224 20 N -0.578 5.578 21 Si 0.907 3.093 22 H -0.220 1.220 23 H -0.165 1.165 24 H -0.190 1.190 25 C -0.055 4.055 26 C -0.168 4.168 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.165 0.835 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -31.166 1.057 -10.086 32.775 hybrid contribution 0.172 1.303 -0.830 1.555 sum -30.994 2.360 -10.916 32.945 Atomic orbital electron populations 1.21015 0.88445 1.04608 1.03843 1.20701 0.98150 0.92994 0.91830 1.21532 0.93781 0.99376 1.02128 1.21214 0.95651 0.96767 0.91852 1.30305 1.24813 1.00285 1.20574 1.04971 0.74431 0.73282 0.78597 1.93516 1.83006 1.45569 1.74960 1.93520 1.82980 1.45581 1.75012 1.30126 1.04441 1.14951 1.21808 1.21405 0.91176 1.04123 0.98984 1.22143 0.88006 1.01924 0.95182 1.62097 1.08860 1.34613 1.21666 1.22243 0.99614 0.90272 0.99218 1.19501 0.94379 0.93774 0.84669 0.94526 1.22720 0.99430 1.00496 1.01248 1.22169 0.92506 1.50667 0.97137 0.95955 1.27188 0.97521 0.94876 1.02772 1.71005 1.09293 1.44457 1.33065 0.83582 0.75089 0.77416 0.73248 1.21965 1.16459 1.18965 1.21219 0.95669 0.96807 0.91815 1.21535 0.93770 0.99393 1.02113 0.89484 0.89836 0.89823 0.82789 0.83428 0.81822 0.81905 0.90375 0.90170 0.89896 0.93415 0.94193 0.90737 0.95547 0.94403 0.92218 0.92939 0.94187 0.83480 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 71.24 0.71 0.07 16 2 C -0.04 -0.42 5.88 -19.86 -0.12 -0.54 16 3 C -0.15 -1.88 9.70 22.27 0.22 -1.67 16 4 C -0.04 -0.58 9.47 22.27 0.21 -0.37 16 5 C -0.67 -12.18 5.66 22.27 0.13 -12.06 16 6 S 2.50 53.41 5.16 -56.49 -0.29 53.12 16 7 O -0.97 -26.70 17.13 -127.65 -2.19 -28.89 16 8 O -0.97 -27.31 17.12 -127.65 -2.19 -29.49 16 9 C -0.58 -9.37 5.98 71.98 0.43 -8.94 16 10 C -0.12 -2.88 5.15 30.59 0.16 -2.72 16 11 C 0.06 1.64 4.41 86.30 0.38 2.02 16 12 N -0.55 -21.94 4.74 -901.48 -4.28 -26.22 16 13 C 0.03 1.34 8.70 127.69 1.11 2.45 16 14 C 0.19 8.43 1.93 44.17 0.09 8.51 16 15 H 0.04 1.65 6.67 -2.39 -0.02 1.63 16 16 C -0.18 -7.30 8.12 71.98 0.58 -6.72 16 17 C -0.59 -33.18 8.31 25.60 0.21 -32.97 16 18 H 0.02 1.41 6.78 -2.91 -0.02 1.39 16 19 C -0.03 -1.52 5.34 84.66 0.45 -1.07 16 20 N -0.94 -59.41 13.70 21.45 0.29 -59.11 16 21 Si 1.09 49.03 26.46 68.60 1.82 50.85 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.24 -9.41 5.53 99.48 0.55 -8.86 16 24 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 25 C -0.04 -0.59 9.47 22.27 0.21 -0.38 16 26 C -0.15 -1.91 9.70 22.27 0.22 -1.69 16 27 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.08 0.28 8.08 -2.39 -0.02 0.26 16 29 H 0.08 0.28 8.09 -2.39 -0.02 0.26 16 30 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.15 2.08 7.57 -2.91 -0.02 2.06 16 32 H 0.16 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.16 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.91 6.47 -2.39 -0.02 1.90 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.23 8.00 -2.39 -0.02 2.21 16 37 H 0.05 1.25 6.81 -2.39 -0.02 1.24 16 38 H 0.04 1.80 6.43 -2.39 -0.02 1.79 16 39 H 0.07 2.41 6.30 -2.38 -0.02 2.40 16 40 H 0.03 0.96 6.41 -2.39 -0.02 0.94 16 41 H 0.04 1.60 6.71 -2.39 -0.02 1.58 16 42 H 0.06 1.97 6.49 -2.39 -0.02 1.95 16 43 H 0.05 2.17 4.88 -2.38 -0.01 2.16 16 44 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 45 H 0.15 2.15 7.56 -2.91 -0.02 2.13 16 46 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -79.52 372.55 -1.07 -80.59 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.77 Total: 15.22 kcal Atomic # 6 Polarization: -61.06 SS G_CDS: 4.99 Total: -56.07 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.98 Total: -85.33 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -4.37 Total: -58.38 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 1.82 Total: 50.85 kcal Atomic # 16 Polarization: 53.41 SS G_CDS: -0.29 Total: 53.12 kcal Total: -79.52 -1.07 -80.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091591761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.686 kcal (2) G-P(sol) polarization free energy of solvation -79.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds