Wall clock time and date at job start Tue Mar 31 2020 14:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99638 * 0.52647 * 6 5 4 8 8 S 1.76206 * 119.99895 * 179.77234 * 7 6 5 9 9 O 1.42096 * 106.40186 * 23.51595 * 8 7 6 10 10 O 1.42097 * 106.40216 * 156.44088 * 8 7 6 11 11 N 1.65600 * 107.21543 * 269.97642 * 8 7 6 12 12 C 1.46502 * 120.00144 * 269.99996 * 11 8 7 13 13 C 1.50699 * 109.46992 * 94.99927 * 12 11 8 14 14 H 1.08003 * 120.00374 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99891 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99930 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99846 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46754 * 90.00593 * 17 15 13 19 19 H 1.48504 * 109.46872 * 210.00219 * 17 15 13 20 20 H 1.48499 * 109.47113 * 330.00303 * 17 15 13 21 21 C 1.46498 * 120.00248 * 89.99649 * 11 8 7 22 22 C 1.53001 * 109.46956 * 119.99928 * 21 11 8 23 23 C 1.52994 * 109.47494 * 240.00303 * 21 11 8 24 24 C 1.38238 * 120.00258 * 359.74632 * 7 6 5 25 25 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 33 33 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 34 34 H 1.08001 * 120.00069 * 180.29825 * 6 5 4 35 35 H 1.09002 * 109.47125 * 215.00142 * 12 11 8 36 36 H 1.08997 * 109.46988 * 335.00210 * 12 11 8 37 37 H 0.97003 * 119.99854 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.46982 * 0.02562 * 21 11 8 39 39 H 1.08997 * 109.47607 * 60.00408 * 22 21 11 40 40 H 1.09006 * 109.47107 * 180.02562 * 22 21 11 41 41 H 1.09001 * 109.47420 * 300.00356 * 22 21 11 42 42 H 1.08999 * 109.47322 * 59.99892 * 23 21 11 43 43 H 1.09011 * 109.47175 * 180.02562 * 23 21 11 44 44 H 1.09003 * 109.47043 * 299.99111 * 23 21 11 45 45 H 1.08003 * 120.00252 * 180.02562 * 24 7 6 46 46 H 1.07991 * 120.00142 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 16 3.5414 -2.8440 -4.9267 9 8 3.5304 -1.8855 -5.9756 10 8 4.7090 -3.5516 -4.5327 11 7 2.4138 -3.9887 -5.3272 12 6 2.5133 -5.3407 -4.7719 13 6 1.6522 -5.4421 -3.5393 14 1 1.0869 -4.5853 -3.2034 15 6 1.5859 -6.6289 -2.8404 16 7 0.8340 -6.7175 -1.7651 17 14 2.5630 -8.1110 -3.4218 18 1 3.9050 -8.0993 -2.7862 19 1 1.8467 -9.3556 -3.0430 20 1 2.7138 -8.0564 -4.8981 21 6 1.3166 -3.6494 -6.2367 22 6 1.3794 -4.5520 -7.4705 23 6 -0.0204 -3.8547 -5.5220 24 6 3.2875 -2.4861 -2.2324 25 6 2.8271 -1.8343 -1.1037 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.0688 0.6339 -2.5850 34 1 1.8982 -0.5206 -4.5956 35 1 2.1733 -6.0639 -5.5132 36 1 3.5501 -5.5501 -4.5089 37 1 0.7871 -7.5525 -1.2736 38 1 1.4085 -2.6076 -6.5441 39 1 1.2878 -5.5938 -7.1637 40 1 0.5633 -4.2992 -8.1475 41 1 2.3320 -4.4057 -7.9797 42 1 -0.0651 -3.2117 -4.6431 43 1 -0.8368 -3.6027 -6.1990 44 1 -0.1121 -4.8966 -5.2152 45 1 3.9088 -3.3640 -2.1333 46 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098152188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:49 Heat of formation + Delta-G solvation = -63.746321 kcal Electronic energy + Delta-G solvation = -27127.587560 eV Core-core repulsion = 23529.744360 eV Total energy + Delta-G solvation = -3597.843200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.33812 -37.03567 -36.69490 -35.41228 -35.25772 -32.73178 -30.87547 -30.75677 -29.79587 -27.47601 -27.21288 -26.62207 -23.62600 -22.54578 -22.40618 -20.43325 -20.02095 -18.37411 -17.58220 -17.00848 -16.76628 -15.92912 -15.41588 -14.96086 -14.37400 -14.32350 -13.91743 -13.75717 -13.67116 -13.56657 -13.16836 -13.07731 -12.87966 -12.73513 -12.47385 -12.14900 -12.04871 -12.01058 -11.60923 -11.55208 -11.38009 -11.31754 -11.23202 -11.14684 -11.07526 -10.97482 -10.83491 -10.62755 -10.47440 -10.32825 -10.14717 -9.99868 -9.45827 -8.82133 -8.66954 -8.61997 -8.08388 -6.13805 -4.12877 0.94948 1.25579 1.66923 3.26136 3.32854 3.36659 3.49495 3.87802 4.32946 4.36243 4.63446 4.72352 4.85772 5.12109 5.15597 5.18428 5.25334 5.29941 5.40982 5.53369 5.58090 5.63731 5.64474 5.69699 5.74523 5.86283 5.89601 5.94630 6.05747 6.13712 6.14880 6.20857 6.22481 6.28313 6.44328 6.46294 6.50234 6.52319 6.68349 6.74852 6.90072 7.06289 7.17910 7.23360 7.42700 7.56568 8.43380 8.92341 9.46917 10.98160 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.005506 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.691545 B = 5083.906745 C = 6154.785946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.029 4.029 5 C -0.144 4.144 6 C -0.023 4.023 7 C -0.667 4.667 8 S 2.690 3.310 9 O -0.978 6.978 10 O -0.963 6.963 11 N -0.972 5.972 12 C 0.211 3.789 13 C -0.535 4.535 14 H 0.085 0.915 15 C 0.077 3.923 16 N -0.893 5.893 17 Si 0.864 3.136 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.263 1.263 21 C 0.149 3.851 22 C -0.157 4.157 23 C -0.156 4.156 24 C 0.011 3.989 25 C -0.137 4.137 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.141 0.859 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.501 12.062 -0.982 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.200 4.200 4 C -0.029 4.029 5 C -0.163 4.163 6 C -0.042 4.042 7 C -0.754 4.754 8 S 2.781 3.219 9 O -0.969 6.969 10 O -0.953 6.953 11 N -0.810 5.810 12 C 0.088 3.912 13 C -0.574 4.574 14 H 0.103 0.897 15 C -0.126 4.126 16 N -0.531 5.531 17 Si 0.691 3.309 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.188 1.188 21 C 0.042 3.958 22 C -0.216 4.216 23 C -0.215 4.215 24 C -0.008 4.008 25 C -0.156 4.156 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.159 0.841 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.220 12.093 -1.272 12.162 hybrid contribution -0.186 -0.877 0.577 1.066 sum 0.033 11.216 -0.695 11.237 Atomic orbital electron populations 1.21854 0.93953 1.02628 1.01748 1.20231 0.96353 0.95991 0.95537 1.21852 1.01248 0.95037 1.01901 1.20081 0.94039 0.94123 0.94660 1.20924 1.02202 1.01196 0.91984 1.20774 0.92153 0.92117 0.99172 1.31006 1.15124 1.10731 1.18502 1.01802 0.73805 0.72735 0.73537 1.93501 1.87105 1.62172 1.54105 1.93530 1.45402 1.72564 1.83815 1.57249 1.42415 1.23909 1.57467 1.19631 0.98228 0.78431 0.94957 1.21505 1.27950 0.99576 1.08392 0.89710 1.24830 0.94904 0.98348 0.94537 1.69891 1.39106 1.26704 1.17417 0.87035 0.80870 0.82952 0.80082 1.19810 1.21193 1.18790 1.20710 0.87364 0.98625 0.89053 1.22107 1.01354 1.01194 0.96953 1.22193 0.94612 1.05223 0.99483 1.20903 0.93194 0.96102 0.90631 1.21137 0.99530 0.95985 0.98968 0.91979 0.92417 0.92405 0.90165 0.92378 0.92357 0.92513 0.85868 0.85031 0.94042 0.93903 0.92634 0.89834 0.91555 0.92127 0.92820 0.92713 0.93579 0.89589 0.84134 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.00 37.16 0.33 -1.22 16 2 C -0.06 -0.71 3.09 -91.77 -0.28 -1.00 16 3 C -0.14 -1.36 9.01 37.16 0.33 -1.02 16 4 C -0.03 -0.42 4.78 -104.62 -0.50 -0.92 16 5 C -0.14 -2.07 8.71 -39.58 -0.34 -2.42 16 6 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 7 C -0.67 -12.33 5.97 -39.58 -0.24 -12.57 16 8 S 2.69 53.16 5.69 -107.50 -0.61 52.55 16 9 O -0.98 -19.43 15.85 -57.17 -0.91 -20.34 16 10 O -0.96 -21.37 15.84 -57.17 -0.91 -22.27 16 11 N -0.97 -19.23 2.73 -108.58 -0.30 -19.53 16 12 C 0.21 4.74 4.07 -5.19 -0.02 4.71 16 13 C -0.54 -13.57 8.08 -34.44 -0.28 -13.85 16 14 H 0.08 2.31 7.32 -52.48 -0.38 1.92 16 15 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.89 -25.49 13.96 55.43 0.77 -24.71 16 17 Si 0.86 20.33 27.47 -169.99 -4.67 15.66 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 21 C 0.15 2.53 3.24 -67.93 -0.22 2.31 16 22 C -0.16 -2.37 9.16 37.16 0.34 -2.03 16 23 C -0.16 -2.67 8.20 37.15 0.30 -2.37 16 24 C 0.01 0.20 9.52 -39.58 -0.38 -0.17 16 25 C -0.14 -2.25 9.67 -39.58 -0.38 -2.63 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.59 7.37 -51.93 -0.38 0.21 16 29 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 30 H 0.06 0.53 7.41 -51.93 -0.38 0.15 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.12 1.43 7.10 -52.48 -0.37 1.05 16 34 H 0.13 1.90 7.62 -52.49 -0.40 1.50 16 35 H 0.04 0.91 5.51 -51.93 -0.29 0.62 16 36 H 0.04 1.00 6.34 -51.93 -0.33 0.68 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.08 1.31 6.91 -51.93 -0.36 0.95 16 39 H 0.07 1.05 6.69 -51.93 -0.35 0.70 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 43 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.09 1.69 6.65 -51.93 -0.35 1.35 16 45 H 0.14 2.71 7.62 -52.48 -0.40 2.31 16 46 H 0.13 1.82 7.95 -52.49 -0.42 1.41 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -30.50 375.39 -10.12 -40.61 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.35 Total: 4.33 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: -1.80 Total: -31.95 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.48 Total: -44.24 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.81 Total: -42.61 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Atomic # 16 Polarization: 53.16 SS G_CDS: -0.61 Total: 52.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.50 -10.12 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098152188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.133 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds