Wall clock time and date at job start Tue Mar 31 2020 14:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99638 * 0.52647 * 6 5 4 8 8 S 1.76206 * 119.99895 * 179.77234 * 7 6 5 9 9 O 1.42096 * 106.40186 * 23.51595 * 8 7 6 10 10 O 1.42097 * 106.40216 * 156.44088 * 8 7 6 11 11 N 1.65600 * 107.21543 * 269.97642 * 8 7 6 12 12 C 1.46502 * 120.00144 * 269.99996 * 11 8 7 13 13 C 1.50699 * 109.46992 * 94.99927 * 12 11 8 14 14 H 1.08003 * 120.00374 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99891 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99930 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99846 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46754 * 90.00593 * 17 15 13 19 19 H 1.48504 * 109.46872 * 210.00219 * 17 15 13 20 20 H 1.48499 * 109.47113 * 330.00303 * 17 15 13 21 21 C 1.46498 * 120.00248 * 89.99649 * 11 8 7 22 22 C 1.53001 * 109.46956 * 119.99928 * 21 11 8 23 23 C 1.52994 * 109.47494 * 240.00303 * 21 11 8 24 24 C 1.38238 * 120.00258 * 359.74632 * 7 6 5 25 25 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 33 33 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 34 34 H 1.08001 * 120.00069 * 180.29825 * 6 5 4 35 35 H 1.09002 * 109.47125 * 215.00142 * 12 11 8 36 36 H 1.08997 * 109.46988 * 335.00210 * 12 11 8 37 37 H 0.97003 * 119.99854 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.46982 * 0.02562 * 21 11 8 39 39 H 1.08997 * 109.47607 * 60.00408 * 22 21 11 40 40 H 1.09006 * 109.47107 * 180.02562 * 22 21 11 41 41 H 1.09001 * 109.47420 * 300.00356 * 22 21 11 42 42 H 1.08999 * 109.47322 * 59.99892 * 23 21 11 43 43 H 1.09011 * 109.47175 * 180.02562 * 23 21 11 44 44 H 1.09003 * 109.47043 * 299.99111 * 23 21 11 45 45 H 1.08003 * 120.00252 * 180.02562 * 24 7 6 46 46 H 1.07991 * 120.00142 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 16 3.5414 -2.8440 -4.9267 9 8 3.5304 -1.8855 -5.9756 10 8 4.7090 -3.5516 -4.5327 11 7 2.4138 -3.9887 -5.3272 12 6 2.5133 -5.3407 -4.7719 13 6 1.6522 -5.4421 -3.5393 14 1 1.0869 -4.5853 -3.2034 15 6 1.5859 -6.6289 -2.8404 16 7 0.8340 -6.7175 -1.7651 17 14 2.5630 -8.1110 -3.4218 18 1 3.9050 -8.0993 -2.7862 19 1 1.8467 -9.3556 -3.0430 20 1 2.7138 -8.0564 -4.8981 21 6 1.3166 -3.6494 -6.2367 22 6 1.3794 -4.5520 -7.4705 23 6 -0.0204 -3.8547 -5.5220 24 6 3.2875 -2.4861 -2.2324 25 6 2.8271 -1.8343 -1.1037 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.0688 0.6339 -2.5850 34 1 1.8982 -0.5206 -4.5956 35 1 2.1733 -6.0639 -5.5132 36 1 3.5501 -5.5501 -4.5089 37 1 0.7871 -7.5525 -1.2736 38 1 1.4085 -2.6076 -6.5441 39 1 1.2878 -5.5938 -7.1637 40 1 0.5633 -4.2992 -8.1475 41 1 2.3320 -4.4057 -7.9797 42 1 -0.0651 -3.2117 -4.6431 43 1 -0.8368 -3.6027 -6.1990 44 1 -0.1121 -4.8966 -5.2152 45 1 3.9088 -3.3640 -2.1333 46 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098152188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:48 Heat of formation + Delta-G solvation = -81.601719 kcal Electronic energy + Delta-G solvation = -27128.361828 eV Core-core repulsion = 23529.744360 eV Total energy + Delta-G solvation = -3598.617468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54553 -38.56010 -38.32211 -36.94266 -36.39101 -34.70001 -32.48110 -32.03817 -30.98164 -29.31650 -27.99296 -27.91527 -24.81334 -24.26916 -23.80739 -21.85917 -21.11936 -19.86400 -19.18822 -18.76498 -18.46959 -17.29051 -16.78261 -16.33135 -16.04151 -15.66415 -15.41822 -15.02037 -14.86881 -14.68370 -14.55875 -14.44907 -14.35602 -14.07740 -13.77981 -13.65647 -13.49437 -13.21116 -13.08533 -13.04935 -12.97569 -12.67316 -12.60230 -12.45273 -12.39283 -12.26602 -12.15603 -12.08884 -11.87401 -11.65102 -11.59781 -11.47097 -11.33481 -10.70195 -10.09101 -9.96564 -9.70880 -8.21714 -6.22655 -0.54746 -0.10531 0.37495 1.37355 1.41577 1.47534 1.99204 2.38198 2.52333 2.82002 3.12775 3.30821 3.62456 3.73982 3.88880 3.96011 4.12215 4.27443 4.32870 4.34012 4.35814 4.47739 4.49138 4.54292 4.81223 4.81974 4.88441 4.89071 4.93702 4.97386 4.98480 4.99210 5.07019 5.08834 5.14426 5.15360 5.27805 5.28964 5.30775 5.38610 5.52290 5.55182 5.58272 5.72310 5.91035 5.92591 6.38623 6.82414 7.39095 8.92986 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.005506 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.691545 B = 5083.906745 C = 6154.785946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.023 4.023 5 C -0.139 4.139 6 C -0.030 4.030 7 C -0.683 4.683 8 S 2.696 3.304 9 O -0.980 6.980 10 O -0.995 6.995 11 N -0.976 5.976 12 C 0.218 3.782 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.024 3.976 16 N -0.937 5.937 17 Si 0.914 3.086 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.242 1.242 21 C 0.138 3.862 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.018 4.018 25 C -0.152 4.152 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.054 0.946 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.119 0.881 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 13.933 -1.952 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.196 4.196 4 C -0.024 4.024 5 C -0.158 4.158 6 C -0.049 4.049 7 C -0.772 4.772 8 S 2.790 3.210 9 O -0.970 6.970 10 O -0.985 6.985 11 N -0.814 5.814 12 C 0.093 3.907 13 C -0.556 4.556 14 H 0.076 0.924 15 C -0.174 4.174 16 N -0.578 5.578 17 Si 0.738 3.262 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.165 1.165 21 C 0.033 3.967 22 C -0.215 4.215 23 C -0.207 4.207 24 C -0.038 4.038 25 C -0.171 4.171 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.137 0.863 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.677 13.963 -2.295 14.166 hybrid contribution 0.030 -1.307 0.933 1.606 sum -0.647 12.656 -1.362 12.745 Atomic orbital electron populations 1.21855 0.93190 1.01628 1.03342 1.20327 0.96834 0.97040 0.93894 1.21838 1.01008 0.93476 1.03323 1.20520 0.92392 0.93074 0.96380 1.21348 1.01531 1.01719 0.91154 1.21108 0.91534 0.91389 1.00895 1.30747 1.16943 1.12080 1.17384 1.01397 0.73350 0.72565 0.73680 1.93484 1.87157 1.61873 1.54495 1.93481 1.47285 1.73420 1.84344 1.57219 1.43283 1.22856 1.58008 1.19389 0.96860 0.80347 0.94078 1.21601 1.26826 0.98310 1.08880 0.92439 1.25521 0.96015 1.01139 0.94763 1.70014 1.41317 1.27409 1.19042 0.86216 0.79202 0.79865 0.80885 1.20131 1.20978 1.16526 1.21051 0.86201 1.00188 0.89254 1.22115 1.02928 0.99965 0.96449 1.22088 0.96117 1.02792 0.99691 1.20880 0.94493 0.96459 0.91938 1.21379 1.00096 0.96853 0.98750 0.94240 0.90187 0.91533 0.89953 0.91591 0.90351 0.92934 0.82252 0.83154 0.92850 0.94859 0.92764 0.88064 0.92676 0.88942 0.92458 0.94333 0.90116 0.92640 0.86314 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.00 71.98 0.65 -2.08 16 2 C -0.06 -1.28 3.09 -11.54 -0.04 -1.32 16 3 C -0.14 -2.19 9.01 71.98 0.65 -1.54 16 4 C -0.02 -0.65 4.78 -19.87 -0.09 -0.74 16 5 C -0.14 -3.70 8.71 22.27 0.19 -3.51 16 6 C -0.03 -0.94 9.52 22.27 0.21 -0.73 16 7 C -0.68 -25.66 5.97 22.27 0.13 -25.52 16 8 S 2.70 107.68 5.69 -56.49 -0.32 107.35 16 9 O -0.98 -38.10 15.85 -128.00 -2.03 -40.13 16 10 O -0.99 -45.60 15.84 -128.00 -2.03 -47.63 16 11 N -0.98 -38.58 2.73 -497.43 -1.36 -39.93 16 12 C 0.22 9.87 4.07 85.63 0.35 10.22 16 13 C -0.52 -26.95 8.08 25.60 0.21 -26.75 16 14 H 0.06 3.27 7.32 -2.91 -0.02 3.25 16 15 C 0.02 1.33 5.47 84.66 0.46 1.79 16 16 N -0.94 -55.22 13.96 21.45 0.30 -54.92 16 17 Si 0.91 42.17 27.47 68.60 1.88 44.06 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 21 C 0.14 4.50 3.24 44.99 0.15 4.65 16 22 C -0.16 -4.33 9.16 71.98 0.66 -3.67 16 23 C -0.15 -4.93 8.20 71.98 0.59 -4.34 16 24 C -0.02 -0.71 9.52 22.27 0.21 -0.50 16 25 C -0.15 -5.08 9.67 22.27 0.22 -4.87 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.14 7.37 -2.39 -0.02 1.13 16 29 H 0.08 1.66 7.88 -2.39 -0.02 1.64 16 30 H 0.07 0.94 7.41 -2.39 -0.02 0.93 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.16 3.05 7.10 -2.91 -0.02 3.03 16 34 H 0.15 4.03 7.62 -2.91 -0.02 4.00 16 35 H 0.05 2.30 5.51 -2.39 -0.01 2.29 16 36 H 0.03 1.59 6.34 -2.39 -0.02 1.57 16 37 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.10 2.96 6.91 -2.39 -0.02 2.94 16 39 H 0.05 1.65 6.69 -2.39 -0.02 1.63 16 40 H 0.09 1.97 8.14 -2.38 -0.02 1.96 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.04 1.37 7.93 -2.39 -0.02 1.35 16 43 H 0.08 2.08 8.14 -2.38 -0.02 2.07 16 44 H 0.05 2.18 6.65 -2.39 -0.02 2.17 16 45 H 0.12 5.01 7.62 -2.91 -0.02 4.98 16 46 H 0.14 4.09 7.95 -2.92 -0.02 4.07 16 Total: -1.00 -67.55 375.39 1.90 -65.65 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.90 Total: 24.46 kcal Atomic # 6 Polarization: -63.46 SS G_CDS: 4.55 Total: -58.91 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -1.06 Total: -94.85 kcal Atomic # 8 Polarization: -83.71 SS G_CDS: -4.06 Total: -87.76 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.06 kcal Atomic # 16 Polarization: 107.68 SS G_CDS: -0.32 Total: 107.35 kcal Total: -67.55 1.90 -65.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098152188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.948 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds