Wall clock time and date at job start Tue Mar 31 2020 14:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46915 * 2 1 4 4 C 1.50694 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.37473 * 122.45022 * 265.02107 * 4 3 2 6 6 C 1.36650 * 113.30087 * 179.97438 * 5 4 3 7 7 C 1.46572 * 125.45919 * 179.97438 * 6 5 4 8 8 O 1.21703 * 120.00411 * 352.23954 * 7 6 5 9 9 N 1.34785 * 119.99743 * 172.23803 * 7 6 5 10 10 C 1.46501 * 119.99867 * 182.24659 * 9 7 6 11 11 C 1.50706 * 109.46757 * 90.00268 * 10 9 7 12 12 H 1.07996 * 120.00228 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00007 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00018 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00146 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47428 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47163 * 119.99765 * 15 13 11 18 18 H 1.48507 * 109.47266 * 239.99515 * 15 13 11 19 19 C 1.46492 * 120.00094 * 2.25097 * 9 7 6 20 20 C 1.53003 * 109.47402 * 82.39613 * 19 9 7 21 21 O 1.42895 * 109.47231 * 64.99504 * 20 19 9 22 22 C 1.42903 * 114.00023 * 180.02562 * 21 20 19 23 23 S 1.75835 * 109.07875 * 0.02562 * 6 5 4 24 24 C 1.33821 * 122.45190 * 84.73519 * 4 3 2 25 25 C 1.50697 * 124.51880 * 0.02562 * 24 4 3 26 26 H 1.08997 * 109.47334 * 300.00342 * 1 2 3 27 27 H 1.09000 * 109.47384 * 60.00196 * 1 2 3 28 28 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46978 * 240.00066 * 2 1 3 30 30 H 1.09002 * 109.47114 * 119.99348 * 2 1 3 31 31 H 1.08997 * 109.46897 * 59.99534 * 3 2 1 32 32 H 1.09000 * 109.46935 * 300.00079 * 3 2 1 33 33 H 1.07997 * 123.34753 * 0.02562 * 5 4 3 34 34 H 1.09001 * 109.47139 * 210.00002 * 10 9 7 35 35 H 1.08995 * 109.47486 * 330.00935 * 10 9 7 36 36 H 0.96998 * 120.00463 * 180.02562 * 14 13 11 37 37 H 1.09006 * 109.47278 * 202.39319 * 19 9 7 38 38 H 1.08997 * 109.47228 * 322.39452 * 19 9 7 39 39 H 1.08993 * 109.47352 * 185.00609 * 20 19 9 40 40 H 1.09007 * 109.46645 * 305.00208 * 20 19 9 41 41 H 1.09001 * 109.46996 * 300.00268 * 22 21 20 42 42 H 1.08999 * 109.47037 * 60.00149 * 22 21 20 43 43 H 1.09004 * 109.47023 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47463 * 90.00135 * 25 24 4 45 45 H 1.09005 * 109.47224 * 210.00048 * 25 24 4 46 46 H 1.09005 * 109.47307 * 329.99847 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2841 1.5435 1.1566 6 6 5.6333 1.5240 0.9408 7 6 6.6622 1.6152 1.9807 8 8 6.3457 1.8593 3.1302 9 7 7.9589 1.4286 1.6639 10 6 8.9822 1.4709 2.7114 11 6 9.1819 0.0874 3.2746 12 1 8.6040 -0.7404 2.8910 13 6 10.1016 -0.1214 4.2804 14 7 10.8050 0.8867 4.7479 15 14 10.3496 -1.8363 4.9780 16 1 9.4438 -2.7881 4.2859 17 1 11.7594 -2.2553 4.7723 18 1 10.0424 -1.8289 6.4309 19 6 8.3450 1.1837 0.2721 20 6 8.4486 2.5173 -0.4707 21 8 9.5128 3.2914 0.0863 22 6 9.6954 4.5633 -0.5389 23 16 5.9372 1.3737 -0.7846 24 6 4.2655 1.3388 -1.1235 25 6 3.6765 1.2119 -2.5048 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.8409 1.6287 2.1378 34 1 9.9205 1.8299 2.2884 35 1 8.6610 2.1438 3.5063 36 1 11.4523 0.7399 5.4552 37 1 9.3101 0.6776 0.2464 38 1 7.5935 0.5575 -0.2086 39 1 8.6484 2.3309 -1.5258 40 1 7.5106 3.0634 -0.3694 41 1 9.9210 4.4197 -1.5956 42 1 8.7832 5.1516 -0.4388 43 1 10.5214 5.0886 -0.0595 44 1 3.5349 2.2046 -2.9321 45 1 4.3536 0.6374 -3.1371 46 1 2.7151 0.7018 -2.4445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:27 Heat of formation + Delta-G solvation = -59.218977 kcal Electronic energy + Delta-G solvation = -25984.852132 eV Core-core repulsion = 22387.205252 eV Total energy + Delta-G solvation = -3597.646880 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.37793 -38.57630 -37.44395 -34.94293 -34.22521 -32.78144 -31.83553 -29.78687 -28.70564 -27.32040 -26.04270 -25.55350 -23.66796 -22.84031 -22.39287 -21.39626 -19.27124 -18.18494 -17.62588 -16.44139 -16.31170 -16.21831 -15.50906 -15.14960 -14.94494 -14.79886 -14.62791 -14.26381 -14.05684 -13.73530 -13.50605 -13.25074 -13.00722 -12.79387 -12.45263 -12.36864 -12.10659 -12.00306 -11.87006 -11.73529 -11.71013 -11.37834 -11.31876 -11.15594 -10.90732 -10.82557 -10.78903 -10.49857 -10.24358 -10.06665 -9.57708 -9.48710 -9.11061 -8.43033 -8.37035 -8.13151 -7.65828 -5.98001 -4.02676 0.77120 1.67365 2.10053 2.57583 3.33613 3.40876 3.44893 3.77368 3.89923 3.97649 4.49598 4.75636 4.77301 4.89614 4.97235 5.04725 5.11299 5.20476 5.34477 5.35414 5.36989 5.40903 5.41597 5.49212 5.51394 5.52615 5.55740 5.60285 5.68181 5.70537 5.80187 5.82289 5.88203 5.98352 6.12428 6.14090 6.18885 6.46609 6.61210 7.18902 7.35120 7.51643 7.59078 7.98735 8.29446 8.37811 8.90866 9.06743 9.61531 11.10013 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.004068 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.747125 B = 6881.961844 C = 8513.871521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.058 4.058 4 C -0.117 4.117 5 C -0.060 4.060 6 C -0.246 4.246 7 C 0.574 3.426 8 O -0.528 6.528 9 N -0.581 5.581 10 C 0.251 3.749 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.101 3.899 20 C 0.037 3.963 21 O -0.370 6.370 22 C 0.032 3.968 23 S 0.207 5.793 24 C -0.241 4.241 25 C -0.081 4.081 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.148 0.852 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.262 0.738 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.660 2.746 -18.222 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.098 4.098 4 C -0.129 4.129 5 C -0.092 4.092 6 C -0.367 4.367 7 C 0.360 3.640 8 O -0.406 6.406 9 N -0.311 5.311 10 C 0.133 3.867 11 C -0.567 4.567 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.026 4.026 20 C -0.041 4.041 21 O -0.289 6.289 22 C -0.065 4.065 23 S 0.477 5.523 24 C -0.359 4.359 25 C -0.139 4.139 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.166 0.834 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.247 2.780 -18.217 22.127 hybrid contribution -1.260 -0.758 0.994 1.776 sum -13.508 2.021 -17.223 21.981 Atomic orbital electron populations 1.21786 0.95863 1.01564 1.01712 1.21516 0.95346 0.96427 1.02491 1.20305 0.89828 0.97122 1.02511 1.18549 0.96882 1.05981 0.91519 1.20548 0.91193 0.97905 0.99554 1.24931 0.98538 1.16661 0.96520 1.16964 0.81816 0.78445 0.86748 1.90798 1.80892 1.49317 1.19626 1.48058 1.06869 1.68160 1.08016 1.19365 0.84922 0.97493 0.84920 1.21508 1.21367 0.94183 1.19653 0.92458 1.24915 0.95687 0.97145 0.96260 1.69955 1.24801 1.30403 1.27963 0.86466 0.77711 0.84342 0.79025 1.19834 1.20973 1.20915 1.21839 1.02680 0.94776 0.83340 1.23360 0.90607 0.93516 0.96665 1.88077 1.52534 1.28989 1.59271 1.22717 1.01111 0.85723 0.96945 1.83625 1.00282 1.68251 1.00097 1.24667 1.02265 1.09212 0.99747 1.20313 1.00823 1.02222 0.90518 0.92660 0.92900 0.92798 0.92003 0.91669 0.91092 0.91319 0.83415 0.93724 0.93806 0.92825 0.87353 0.89819 0.92307 0.92807 0.94507 0.94480 0.89659 0.91062 0.91552 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.12 5.85 -26.73 -0.16 -1.27 16 3 C -0.06 -0.59 4.82 -27.88 -0.13 -0.72 16 4 C -0.12 -1.50 5.04 -106.45 -0.54 -2.03 16 5 C -0.06 -0.95 9.79 -40.43 -0.40 -1.34 16 6 C -0.25 -4.35 6.08 -36.80 -0.22 -4.57 16 7 C 0.57 12.98 7.55 -12.90 -0.10 12.89 16 8 O -0.53 -14.08 16.42 5.19 0.09 -14.00 16 9 N -0.58 -13.01 2.42 -176.64 -0.43 -13.44 16 10 C 0.25 6.83 5.14 -5.19 -0.03 6.80 16 11 C -0.53 -15.33 9.39 -34.44 -0.32 -15.65 16 12 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 13 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 15 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 C 0.10 1.73 5.34 -4.04 -0.02 1.71 16 20 C 0.04 0.55 4.80 37.16 0.18 0.73 16 21 O -0.37 -6.36 10.46 -35.23 -0.37 -6.72 16 22 C 0.03 0.40 11.01 101.05 1.11 1.51 16 23 S 0.21 2.69 15.39 -107.50 -1.65 1.04 16 24 C -0.24 -2.84 6.28 -35.86 -0.23 -3.07 16 25 C -0.08 -0.68 9.71 36.00 0.35 -0.33 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.56 7.21 -51.93 -0.37 0.19 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 33 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.04 1.25 7.88 -51.93 -0.41 0.84 16 35 H 0.04 1.34 7.39 -51.93 -0.38 0.96 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.11 1.90 8.02 -51.93 -0.42 1.49 16 38 H 0.09 1.27 4.45 -22.07 -0.10 1.17 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.79 6.23 -49.69 -0.31 0.48 16 41 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.56 6.37 -51.93 -0.33 0.23 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -34.47 383.72 -8.42 -42.90 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.33 Total: -2.05 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -0.23 Total: -4.43 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.31 Total: -39.72 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.28 Total: -20.72 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.65 Total: 1.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.47 -8.42 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.324 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds