Wall clock time and date at job start Tue Mar 31 2020 14:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46915 * 2 1 4 4 C 1.50694 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.37473 * 122.45022 * 265.02107 * 4 3 2 6 6 C 1.36650 * 113.30087 * 179.97438 * 5 4 3 7 7 C 1.46572 * 125.45919 * 179.97438 * 6 5 4 8 8 O 1.21703 * 120.00411 * 352.23954 * 7 6 5 9 9 N 1.34785 * 119.99743 * 172.23803 * 7 6 5 10 10 C 1.46501 * 119.99867 * 182.24659 * 9 7 6 11 11 C 1.50706 * 109.46757 * 90.00268 * 10 9 7 12 12 H 1.07996 * 120.00228 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00007 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00018 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00146 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47428 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47163 * 119.99765 * 15 13 11 18 18 H 1.48507 * 109.47266 * 239.99515 * 15 13 11 19 19 C 1.46492 * 120.00094 * 2.25097 * 9 7 6 20 20 C 1.53003 * 109.47402 * 82.39613 * 19 9 7 21 21 O 1.42895 * 109.47231 * 64.99504 * 20 19 9 22 22 C 1.42903 * 114.00023 * 180.02562 * 21 20 19 23 23 S 1.75835 * 109.07875 * 0.02562 * 6 5 4 24 24 C 1.33821 * 122.45190 * 84.73519 * 4 3 2 25 25 C 1.50697 * 124.51880 * 0.02562 * 24 4 3 26 26 H 1.08997 * 109.47334 * 300.00342 * 1 2 3 27 27 H 1.09000 * 109.47384 * 60.00196 * 1 2 3 28 28 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46978 * 240.00066 * 2 1 3 30 30 H 1.09002 * 109.47114 * 119.99348 * 2 1 3 31 31 H 1.08997 * 109.46897 * 59.99534 * 3 2 1 32 32 H 1.09000 * 109.46935 * 300.00079 * 3 2 1 33 33 H 1.07997 * 123.34753 * 0.02562 * 5 4 3 34 34 H 1.09001 * 109.47139 * 210.00002 * 10 9 7 35 35 H 1.08995 * 109.47486 * 330.00935 * 10 9 7 36 36 H 0.96998 * 120.00463 * 180.02562 * 14 13 11 37 37 H 1.09006 * 109.47278 * 202.39319 * 19 9 7 38 38 H 1.08997 * 109.47228 * 322.39452 * 19 9 7 39 39 H 1.08993 * 109.47352 * 185.00609 * 20 19 9 40 40 H 1.09007 * 109.46645 * 305.00208 * 20 19 9 41 41 H 1.09001 * 109.46996 * 300.00268 * 22 21 20 42 42 H 1.08999 * 109.47037 * 60.00149 * 22 21 20 43 43 H 1.09004 * 109.47023 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47463 * 90.00135 * 25 24 4 45 45 H 1.09005 * 109.47224 * 210.00048 * 25 24 4 46 46 H 1.09005 * 109.47307 * 329.99847 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2841 1.5435 1.1566 6 6 5.6333 1.5240 0.9408 7 6 6.6622 1.6152 1.9807 8 8 6.3457 1.8593 3.1302 9 7 7.9589 1.4286 1.6639 10 6 8.9822 1.4709 2.7114 11 6 9.1819 0.0874 3.2746 12 1 8.6040 -0.7404 2.8910 13 6 10.1016 -0.1214 4.2804 14 7 10.8050 0.8867 4.7479 15 14 10.3496 -1.8363 4.9780 16 1 9.4438 -2.7881 4.2859 17 1 11.7594 -2.2553 4.7723 18 1 10.0424 -1.8289 6.4309 19 6 8.3450 1.1837 0.2721 20 6 8.4486 2.5173 -0.4707 21 8 9.5128 3.2914 0.0863 22 6 9.6954 4.5633 -0.5389 23 16 5.9372 1.3737 -0.7846 24 6 4.2655 1.3388 -1.1235 25 6 3.6765 1.2119 -2.5048 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.8409 1.6287 2.1378 34 1 9.9205 1.8299 2.2884 35 1 8.6610 2.1438 3.5063 36 1 11.4523 0.7399 5.4552 37 1 9.3101 0.6776 0.2464 38 1 7.5935 0.5575 -0.2086 39 1 8.6484 2.3309 -1.5258 40 1 7.5106 3.0634 -0.3694 41 1 9.9210 4.4197 -1.5956 42 1 8.7832 5.1516 -0.4388 43 1 10.5214 5.0886 -0.0595 44 1 3.5349 2.2046 -2.9321 45 1 4.3536 0.6374 -3.1371 46 1 2.7151 0.7018 -2.4445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103214828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:27 Heat of formation + Delta-G solvation = -81.113209 kcal Electronic energy + Delta-G solvation = -25985.801537 eV Core-core repulsion = 22387.205252 eV Total energy + Delta-G solvation = -3598.596285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96450 -39.70731 -38.75269 -36.67431 -35.13358 -34.85143 -32.90656 -31.34556 -29.83636 -28.84707 -27.18450 -26.82195 -25.14309 -24.31329 -23.64286 -22.42908 -20.61707 -19.40874 -19.03099 -18.64328 -17.65252 -17.36243 -16.86424 -16.76949 -16.32671 -16.21011 -15.66838 -15.54268 -15.29077 -15.03134 -14.60079 -14.41628 -14.30998 -13.85010 -13.82218 -13.58957 -13.43172 -13.16498 -13.12184 -12.92690 -12.80963 -12.73987 -12.64462 -12.59380 -12.29732 -12.21719 -12.11677 -11.88378 -11.72046 -11.51814 -11.24247 -10.91455 -10.66482 -10.60620 -9.74815 -9.36699 -9.18998 -8.22459 -6.38182 -0.44386 0.49978 1.00189 1.35070 1.37968 1.40455 1.50322 2.12393 2.27545 2.40576 2.82943 3.06580 3.53897 3.89134 3.97248 4.02479 4.13139 4.14467 4.20543 4.29772 4.35160 4.37655 4.51163 4.56903 4.58326 4.67277 4.75983 4.78696 4.80511 4.85572 4.89525 4.96315 5.04031 5.12101 5.14598 5.20605 5.24806 5.26451 5.45721 5.49869 5.52477 5.61332 5.78467 6.04270 6.26145 6.60850 6.70896 7.19559 7.35600 8.85291 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.004068 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.747125 B = 6881.961844 C = 8513.871521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.055 4.055 4 C -0.133 4.133 5 C -0.052 4.052 6 C -0.304 4.304 7 C 0.567 3.433 8 O -0.592 6.592 9 N -0.588 5.588 10 C 0.274 3.726 11 C -0.547 4.547 12 H 0.053 0.947 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.266 1.266 18 H -0.281 1.281 19 C 0.093 3.907 20 C 0.041 3.959 21 O -0.414 6.414 22 C 0.026 3.974 23 S 0.265 5.735 24 C -0.215 4.215 25 C -0.085 4.085 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.030 0.970 35 H -0.007 1.007 36 H 0.268 0.732 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 1.570 -22.221 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.087 4.087 6 C -0.423 4.423 7 C 0.356 3.644 8 O -0.476 6.476 9 N -0.317 5.317 10 C 0.153 3.847 11 C -0.586 4.586 12 H 0.071 0.929 13 C -0.191 4.191 14 N -0.566 5.566 15 Si 0.795 3.205 16 H -0.191 1.191 17 H -0.191 1.191 18 H -0.207 1.207 19 C -0.032 4.032 20 C -0.037 4.037 21 O -0.334 6.334 22 C -0.070 4.070 23 S 0.536 5.464 24 C -0.334 4.334 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.048 0.952 35 H 0.011 0.989 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.710 1.606 -22.281 26.210 hybrid contribution -0.873 -0.328 2.129 2.324 sum -14.582 1.278 -20.152 24.907 Atomic orbital electron populations 1.21761 0.94459 1.02074 1.02332 1.21495 0.96547 0.95714 1.01839 1.20353 0.87712 0.97829 1.03478 1.18680 0.98408 1.06819 0.90489 1.20701 0.91074 0.96586 1.00310 1.24434 0.97570 1.21587 0.98711 1.17642 0.82493 0.76983 0.87259 1.90730 1.81955 1.52239 1.22647 1.47976 1.06199 1.68193 1.09331 1.18707 0.85283 0.95711 0.84970 1.21746 1.21719 0.94612 1.20513 0.92921 1.25885 0.95096 1.01757 0.96333 1.70081 1.25260 1.32842 1.28417 0.85327 0.78474 0.78794 0.77938 1.19138 1.19077 1.20657 1.22184 1.03033 0.97129 0.80861 1.23393 0.90300 0.91681 0.98325 1.88023 1.53288 1.30940 1.61116 1.22910 1.01498 0.84049 0.98507 1.83067 1.01043 1.67055 0.95270 1.25211 1.01440 1.05374 1.01363 1.20549 1.01738 1.04018 0.87992 0.92943 0.91395 0.92388 0.91240 0.93771 0.91542 0.88966 0.85176 0.95202 0.98936 0.92342 0.88108 0.87441 0.87609 0.92787 0.91362 0.93931 0.89673 0.88935 0.89756 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.94 5.85 30.60 0.18 -1.76 16 3 C -0.05 -0.96 4.82 29.85 0.14 -0.82 16 4 C -0.13 -3.16 5.04 -21.05 -0.11 -3.27 16 5 C -0.05 -1.71 9.79 21.72 0.21 -1.50 16 6 C -0.30 -10.99 6.08 24.07 0.15 -10.85 16 7 C 0.57 27.46 7.55 86.42 0.65 28.12 16 8 O -0.59 -34.66 16.42 -4.36 -0.07 -34.73 16 9 N -0.59 -27.96 2.42 -830.98 -2.01 -29.97 16 10 C 0.27 16.03 5.14 85.63 0.44 16.47 16 11 C -0.55 -33.36 9.39 25.60 0.24 -33.12 16 12 H 0.05 3.18 7.81 -2.91 -0.02 3.15 16 13 C 0.01 0.50 5.46 84.65 0.46 0.96 16 14 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 15 Si 0.97 46.54 29.54 68.60 2.03 48.57 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 C 0.09 3.21 5.34 86.38 0.46 3.67 16 20 C 0.04 1.16 4.80 71.98 0.35 1.50 16 21 O -0.41 -14.30 10.46 -148.98 -1.56 -15.86 16 22 C 0.03 0.64 11.01 113.37 1.25 1.89 16 23 S 0.26 6.24 15.39 -56.49 -0.87 5.37 16 24 C -0.22 -4.30 6.28 24.68 0.15 -4.15 16 25 C -0.08 -0.96 9.71 71.24 0.69 -0.26 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 1.03 7.21 -2.39 -0.02 1.01 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 32 H 0.09 1.22 7.48 -2.39 -0.02 1.20 16 33 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 34 H 0.03 1.80 7.88 -2.39 -0.02 1.78 16 35 H -0.01 -0.51 7.39 -2.39 -0.02 -0.52 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.10 3.61 8.02 -2.38 -0.02 3.59 16 38 H 0.11 3.13 4.45 -21.38 -0.10 3.04 16 39 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.52 6.23 -3.80 -0.02 1.50 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.09 0.83 6.37 -2.38 -0.02 0.81 16 Total: -1.00 -82.45 383.72 4.65 -77.80 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.87 Total: 11.12 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.99 Total: -4.29 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -1.73 Total: -87.98 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.63 Total: -50.59 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -0.87 Total: 5.37 kcal Total: -82.45 4.65 -77.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.315 kcal (2) G-P(sol) polarization free energy of solvation -82.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds