Wall clock time and date at job start Tue Mar 31 2020 14:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 C 1.52999 * 109.47185 * 120.00285 * 2 1 3 5 5 C 1.53006 * 109.47107 * 174.99760 * 4 2 1 6 6 N 1.46498 * 109.46922 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99725 * 274.99997 * 6 5 4 8 8 C 1.50704 * 109.47139 * 274.99675 * 7 6 5 9 9 H 1.07996 * 119.99847 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00076 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00266 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 120.00175 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47041 * 89.99390 * 12 10 8 14 14 H 1.48493 * 109.47287 * 209.99466 * 12 10 8 15 15 H 1.48500 * 109.46928 * 329.99689 * 12 10 8 16 16 S 1.65602 * 120.00428 * 94.99974 * 6 5 4 17 17 O 1.42105 * 104.27475 * 333.92805 * 16 6 5 18 18 O 1.42091 * 104.27856 * 206.07308 * 16 6 5 19 19 C 1.81396 * 104.44582 * 89.99710 * 16 6 5 20 20 C 1.50707 * 109.47003 * 180.02562 * 19 16 6 21 21 C 1.38238 * 119.99792 * 90.00226 * 20 19 16 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.98162 * 20 19 16 26 26 H 1.09002 * 109.46791 * 299.99824 * 1 2 3 27 27 H 1.08999 * 109.47270 * 59.99725 * 1 2 3 28 28 H 1.08996 * 109.47781 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47230 * 240.00378 * 2 1 3 30 30 H 1.09000 * 109.47546 * 299.99833 * 3 2 1 31 31 H 1.09002 * 109.47118 * 60.00376 * 3 2 1 32 32 H 1.09008 * 109.47149 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46842 * 54.99797 * 4 2 1 34 34 H 1.08994 * 109.47221 * 294.99890 * 4 2 1 35 35 H 1.08994 * 109.46844 * 60.00409 * 5 4 2 36 36 H 1.08994 * 109.47186 * 300.00152 * 5 4 2 37 37 H 1.08997 * 109.47609 * 35.00197 * 7 6 5 38 38 H 1.08997 * 109.47032 * 155.00262 * 7 6 5 39 39 H 0.96991 * 119.99984 * 180.02562 * 11 10 8 40 40 H 1.09005 * 109.47589 * 60.00672 * 19 16 6 41 41 H 1.09000 * 109.47576 * 299.99830 * 19 16 6 42 42 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 46 46 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0531 -1.5223 2.3837 7 6 4.2972 -0.7694 3.6165 8 6 5.6798 -0.1711 3.5743 9 1 6.3130 -0.3349 2.7149 10 6 6.1358 0.5863 4.6322 11 7 7.3421 1.1089 4.5952 12 14 5.0402 0.8703 6.1184 13 1 5.2678 -0.2075 7.1143 14 1 5.3646 2.1846 6.7286 15 1 3.6173 0.8594 5.6937 16 16 4.3290 -3.1547 2.3420 17 8 3.4597 -3.6311 1.3239 18 8 4.1738 -3.5709 3.6917 19 6 6.0606 -3.3078 1.8237 20 6 6.4350 -4.7656 1.7472 21 6 6.2611 -5.4628 0.5662 22 6 6.6051 -6.7999 0.4959 23 6 7.1233 -7.4396 1.6064 24 6 7.2922 -6.7438 2.7888 25 6 6.9526 -5.4055 2.8578 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6053 -1.7198 1.2950 34 1 1.7516 -0.1584 2.1369 35 1 3.9994 0.1674 1.1420 36 1 3.8531 -1.3940 0.3001 37 1 3.5591 0.0274 3.7079 38 1 4.2172 -1.4389 4.4730 39 1 7.6630 1.6414 5.3396 40 1 6.7024 -2.8051 2.5472 41 1 6.1885 -2.8484 0.8435 42 1 5.8566 -4.9629 -0.3015 43 1 6.4689 -7.3447 -0.4266 44 1 7.3924 -8.4841 1.5513 45 1 7.6930 -7.2446 3.6577 46 1 7.0891 -4.8606 3.7802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103496091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:07 Heat of formation + Delta-G solvation = -66.056017 kcal Electronic energy + Delta-G solvation = -26326.644671 eV Core-core repulsion = 22728.701315 eV Total energy + Delta-G solvation = -3597.943356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.20544 -37.32171 -36.58955 -35.41974 -34.92690 -32.91361 -32.50094 -30.89591 -29.34337 -27.26646 -27.08142 -26.79304 -23.13239 -22.58146 -21.95456 -21.30614 -19.73392 -18.26175 -17.12833 -17.06242 -16.72044 -15.91727 -15.81577 -15.15879 -15.05584 -14.93115 -14.40252 -14.13297 -13.71437 -13.41263 -13.29676 -13.21784 -12.76898 -12.74076 -12.54043 -12.33974 -12.18680 -12.02037 -11.90134 -11.58675 -11.44764 -11.37668 -11.31713 -11.21782 -10.99938 -10.90312 -10.75463 -10.67380 -10.47171 -10.37151 -10.24388 -10.01565 -9.63307 -8.92929 -8.71159 -8.68275 -8.04547 -6.21352 -4.22934 0.64662 1.39738 1.44572 3.20355 3.26446 3.32776 3.34987 3.77569 4.26023 4.31550 4.57761 4.66244 4.90509 4.98775 5.02898 5.07495 5.12687 5.13275 5.14356 5.34404 5.37482 5.48924 5.62039 5.72761 5.74474 5.79056 5.88009 5.90188 5.95849 6.00595 6.04700 6.10161 6.19079 6.26458 6.37175 6.39707 6.42842 6.49132 6.56421 6.64182 6.68842 6.85904 6.97269 7.09682 7.34762 7.50260 8.34342 8.79340 9.39557 10.90817 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009057 B = 0.005345 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.951999 B = 5236.979525 C = 7533.865717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.135 4.135 5 C 0.130 3.870 6 N -0.979 5.979 7 C 0.212 3.788 8 C -0.549 4.549 9 H 0.080 0.920 10 C 0.078 3.922 11 N -0.893 5.893 12 Si 0.869 3.131 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.262 1.262 16 S 2.610 3.390 17 O -0.968 6.968 18 O -0.954 6.954 19 C -0.591 4.591 20 C -0.081 4.081 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.105 4.105 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.266 0.734 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 -8.936 -8.988 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.174 4.174 5 C 0.004 3.996 6 N -0.815 5.815 7 C 0.088 3.912 8 C -0.588 4.588 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.530 5.530 12 Si 0.695 3.305 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.187 1.187 16 S 2.703 3.297 17 O -0.958 6.958 18 O -0.945 6.945 19 C -0.717 4.717 20 C -0.083 4.083 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.124 4.124 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.173 0.827 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.342 -9.440 -8.656 13.877 hybrid contribution 0.377 0.728 0.650 1.046 sum -4.965 -8.711 -8.006 12.831 Atomic orbital electron populations 1.21829 0.95593 1.01540 1.01345 1.21053 0.95443 0.96368 0.98444 1.21922 1.01749 0.95814 1.01321 1.22103 0.96420 1.01052 0.97872 1.21196 0.93462 0.99060 0.85869 1.57223 1.78847 1.26152 1.19328 1.19625 0.97576 0.92549 0.81412 1.21475 0.98726 1.32998 1.05559 0.90228 1.24843 0.94826 0.94794 0.98106 1.69888 1.16966 1.34005 1.32176 0.86951 0.81816 0.78142 0.83597 1.19623 1.20991 1.18661 1.04985 0.76850 0.73462 0.74399 1.93527 1.61385 1.79937 1.60934 1.93541 1.85326 1.80965 1.34620 1.29818 1.28308 0.99513 1.14037 1.19157 1.01508 0.92721 0.94905 1.21183 0.99539 0.94881 0.97302 1.21126 0.99449 0.94524 0.98815 1.21207 0.99516 0.99912 0.93244 1.21178 1.00152 0.94234 0.98113 1.21311 0.97414 0.95195 0.98476 0.92816 0.93056 0.92796 0.91215 0.93262 0.92627 0.91934 0.91410 0.91450 0.89580 0.91562 0.94287 0.93589 0.92399 0.82704 0.84708 0.85383 0.85709 0.85911 0.85563 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.19 37.15 0.34 -1.28 16 2 C -0.09 -1.18 2.92 -90.62 -0.26 -1.44 16 3 C -0.15 -1.81 8.95 37.16 0.33 -1.48 16 4 C -0.14 -2.07 5.01 -26.73 -0.13 -2.20 16 5 C 0.13 2.17 5.01 -4.04 -0.02 2.15 16 6 N -0.98 -19.15 2.70 -115.66 -0.31 -19.46 16 7 C 0.21 4.82 4.48 -5.19 -0.02 4.79 16 8 C -0.55 -14.13 9.94 -34.44 -0.34 -14.47 16 9 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 10 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 12 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 16 S 2.61 49.86 5.35 -107.50 -0.58 49.29 16 17 O -0.97 -18.81 16.75 -57.54 -0.96 -19.78 16 18 O -0.95 -21.13 16.53 -57.54 -0.95 -22.08 16 19 C -0.59 -9.74 6.31 36.01 0.23 -9.51 16 20 C -0.08 -1.28 5.14 -104.62 -0.54 -1.82 16 21 C -0.11 -1.53 9.70 -39.58 -0.38 -1.91 16 22 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 25 C -0.11 -1.59 9.70 -39.58 -0.38 -1.98 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.78 6.57 -51.92 -0.34 0.44 16 33 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.44 6.53 -51.93 -0.34 1.10 16 36 H 0.07 0.97 7.61 -51.93 -0.39 0.58 16 37 H 0.04 0.87 7.17 -51.93 -0.37 0.50 16 38 H 0.05 1.09 6.24 -51.93 -0.32 0.77 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 40 H 0.15 2.71 8.09 -51.92 -0.42 2.29 16 41 H 0.13 1.90 8.08 -51.92 -0.42 1.48 16 42 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 46 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -31.54 387.30 -11.03 -42.57 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.69 Total: 5.35 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: -2.48 Total: -32.66 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.46 Total: -44.34 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.91 Total: -41.86 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Atomic # 16 Polarization: 49.86 SS G_CDS: -0.58 Total: 49.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.54 -11.03 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.490 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds