Wall clock time and date at job start Tue Mar 31 2020 14:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 C 1.52999 * 109.47185 * 120.00285 * 2 1 3 5 5 C 1.53006 * 109.47107 * 174.99760 * 4 2 1 6 6 N 1.46498 * 109.46922 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99725 * 274.99997 * 6 5 4 8 8 C 1.50704 * 109.47139 * 274.99675 * 7 6 5 9 9 H 1.07996 * 119.99847 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00076 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00266 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 120.00175 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47041 * 89.99390 * 12 10 8 14 14 H 1.48493 * 109.47287 * 209.99466 * 12 10 8 15 15 H 1.48500 * 109.46928 * 329.99689 * 12 10 8 16 16 S 1.65602 * 120.00428 * 94.99974 * 6 5 4 17 17 O 1.42105 * 104.27475 * 333.92805 * 16 6 5 18 18 O 1.42091 * 104.27856 * 206.07308 * 16 6 5 19 19 C 1.81396 * 104.44582 * 89.99710 * 16 6 5 20 20 C 1.50707 * 109.47003 * 180.02562 * 19 16 6 21 21 C 1.38238 * 119.99792 * 90.00226 * 20 19 16 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.98162 * 20 19 16 26 26 H 1.09002 * 109.46791 * 299.99824 * 1 2 3 27 27 H 1.08999 * 109.47270 * 59.99725 * 1 2 3 28 28 H 1.08996 * 109.47781 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47230 * 240.00378 * 2 1 3 30 30 H 1.09000 * 109.47546 * 299.99833 * 3 2 1 31 31 H 1.09002 * 109.47118 * 60.00376 * 3 2 1 32 32 H 1.09008 * 109.47149 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46842 * 54.99797 * 4 2 1 34 34 H 1.08994 * 109.47221 * 294.99890 * 4 2 1 35 35 H 1.08994 * 109.46844 * 60.00409 * 5 4 2 36 36 H 1.08994 * 109.47186 * 300.00152 * 5 4 2 37 37 H 1.08997 * 109.47609 * 35.00197 * 7 6 5 38 38 H 1.08997 * 109.47032 * 155.00262 * 7 6 5 39 39 H 0.96991 * 119.99984 * 180.02562 * 11 10 8 40 40 H 1.09005 * 109.47589 * 60.00672 * 19 16 6 41 41 H 1.09000 * 109.47576 * 299.99830 * 19 16 6 42 42 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 46 46 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0531 -1.5223 2.3837 7 6 4.2972 -0.7694 3.6165 8 6 5.6798 -0.1711 3.5743 9 1 6.3130 -0.3349 2.7149 10 6 6.1358 0.5863 4.6322 11 7 7.3421 1.1089 4.5952 12 14 5.0402 0.8703 6.1184 13 1 5.2678 -0.2075 7.1143 14 1 5.3646 2.1846 6.7286 15 1 3.6173 0.8594 5.6937 16 16 4.3290 -3.1547 2.3420 17 8 3.4597 -3.6311 1.3239 18 8 4.1738 -3.5709 3.6917 19 6 6.0606 -3.3078 1.8237 20 6 6.4350 -4.7656 1.7472 21 6 6.2611 -5.4628 0.5662 22 6 6.6051 -6.7999 0.4959 23 6 7.1233 -7.4396 1.6064 24 6 7.2922 -6.7438 2.7888 25 6 6.9526 -5.4055 2.8578 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6053 -1.7198 1.2950 34 1 1.7516 -0.1584 2.1369 35 1 3.9994 0.1674 1.1420 36 1 3.8531 -1.3940 0.3001 37 1 3.5591 0.0274 3.7079 38 1 4.2172 -1.4389 4.4730 39 1 7.6630 1.6414 5.3396 40 1 6.7024 -2.8051 2.5472 41 1 6.1885 -2.8484 0.8435 42 1 5.8566 -4.9629 -0.3015 43 1 6.4689 -7.3447 -0.4266 44 1 7.3924 -8.4841 1.5513 45 1 7.6930 -7.2446 3.6577 46 1 7.0891 -4.8606 3.7802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103496091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:06 Heat of formation + Delta-G solvation = -84.274710 kcal Electronic energy + Delta-G solvation = -26327.434693 eV Core-core repulsion = 22728.701315 eV Total energy + Delta-G solvation = -3598.733378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.22380 -38.63335 -38.18554 -37.00062 -36.34735 -34.48129 -34.02195 -31.89171 -30.89481 -28.67866 -28.29504 -27.92044 -24.68150 -23.58815 -23.47178 -22.49028 -20.80888 -19.81045 -19.02130 -18.61683 -17.94261 -17.43819 -17.18077 -16.45284 -16.19252 -16.10744 -15.96276 -15.57942 -14.90693 -14.65954 -14.48866 -14.39061 -14.29739 -14.02263 -13.82648 -13.71239 -13.66503 -13.37631 -13.18046 -13.07089 -13.04326 -12.96786 -12.60249 -12.41393 -12.37282 -12.14617 -12.03708 -11.98898 -11.90663 -11.77667 -11.56301 -11.44984 -11.29491 -10.78510 -9.94063 -9.92060 -9.53557 -8.30978 -6.35429 -0.80687 0.36189 0.38883 1.35389 1.39078 1.46511 1.72257 2.33467 2.70583 2.85544 3.04200 3.13858 3.39823 3.75609 3.85732 3.96752 4.07535 4.09589 4.14138 4.19680 4.23825 4.49994 4.53907 4.59995 4.61758 4.62833 4.74323 4.84753 4.87814 4.95512 4.98568 4.99985 5.07087 5.08690 5.17645 5.20302 5.35470 5.38162 5.45254 5.46252 5.49778 5.51435 5.54997 5.60863 5.78687 6.00133 6.28314 6.69263 7.29908 8.83861 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009057 B = 0.005345 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.951999 B = 5236.979525 C = 7533.865717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.985 5.985 7 C 0.220 3.780 8 C -0.541 4.541 9 H 0.058 0.942 10 C 0.026 3.974 11 N -0.935 5.935 12 Si 0.919 3.081 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.245 1.245 16 S 2.611 3.389 17 O -0.972 6.972 18 O -0.991 6.991 19 C -0.572 4.572 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.134 4.134 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.036 0.964 39 H 0.268 0.732 40 H 0.138 0.862 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.150 0.850 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -10.378 -10.502 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.172 4.172 5 C -0.004 4.004 6 N -0.821 5.821 7 C 0.095 3.905 8 C -0.580 4.580 9 H 0.077 0.923 10 C -0.174 4.174 11 N -0.575 5.575 12 Si 0.743 3.257 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.168 1.168 16 S 2.708 3.292 17 O -0.963 6.963 18 O -0.982 6.982 19 C -0.701 4.701 20 C -0.114 4.114 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.153 4.153 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.177 0.823 44 H 0.179 0.821 45 H 0.168 0.832 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.239 -10.871 -10.180 16.148 hybrid contribution 0.727 1.039 1.009 1.621 sum -5.512 -9.832 -9.171 14.532 Atomic orbital electron populations 1.21815 0.94362 1.01782 1.02176 1.21057 0.96473 0.96331 0.97178 1.21910 1.01187 0.95607 1.01987 1.22085 0.95307 1.00733 0.99114 1.21461 0.94465 0.99033 0.85427 1.57172 1.79529 1.26126 1.19277 1.19340 0.95901 0.92569 0.82647 1.21695 0.99730 1.32080 1.04539 0.92337 1.25581 0.95960 0.94918 1.00899 1.70001 1.18752 1.35481 1.33287 0.86128 0.81137 0.78069 0.80379 1.19673 1.20400 1.16808 1.04847 0.77794 0.72974 0.73617 1.93504 1.62455 1.79846 1.60474 1.93484 1.86441 1.81510 1.36771 1.29559 1.24921 1.01083 1.14532 1.19244 1.03683 0.92147 0.96292 1.21479 0.99715 0.96085 0.96927 1.21595 0.98001 0.93775 1.00407 1.21700 0.97608 1.01553 0.92223 1.21528 0.99586 0.93234 0.99837 1.21452 0.98982 0.96756 0.98116 0.93015 0.91226 0.92875 0.90280 0.91313 0.93255 0.92806 0.92443 0.92412 0.89829 0.89558 0.93622 0.94608 0.92326 0.84389 0.82513 0.84064 0.82267 0.82137 0.83229 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.19 71.98 0.66 -2.28 16 2 C -0.09 -2.15 2.92 -10.80 -0.03 -2.18 16 3 C -0.15 -3.38 8.95 71.98 0.64 -2.74 16 4 C -0.13 -4.00 5.01 30.60 0.15 -3.85 16 5 C 0.12 4.00 5.01 86.38 0.43 4.44 16 6 N -0.98 -39.04 2.70 -519.85 -1.40 -40.45 16 7 C 0.22 10.16 4.48 85.63 0.38 10.54 16 8 C -0.54 -28.57 9.94 25.60 0.25 -28.31 16 9 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 10 C 0.03 1.43 5.47 84.65 0.46 1.90 16 11 N -0.94 -55.10 13.96 21.45 0.30 -54.80 16 12 Si 0.92 42.36 27.47 68.60 1.88 44.24 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 16 S 2.61 101.40 5.35 -56.49 -0.30 101.10 16 17 O -0.97 -37.57 16.75 -127.65 -2.14 -39.71 16 18 O -0.99 -45.36 16.53 -127.65 -2.11 -47.47 16 19 C -0.57 -19.26 6.31 71.24 0.45 -18.81 16 20 C -0.11 -3.51 5.14 -19.86 -0.10 -3.62 16 21 C -0.12 -3.21 9.70 22.27 0.22 -3.00 16 22 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 23 C -0.11 -2.19 10.05 22.27 0.22 -1.97 16 24 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 25 C -0.13 -4.11 9.70 22.27 0.22 -3.89 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.30 6.57 -2.38 -0.02 1.28 16 33 H 0.06 1.83 7.90 -2.39 -0.02 1.81 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 2.79 6.53 -2.39 -0.02 2.78 16 36 H 0.09 2.47 7.61 -2.39 -0.02 2.45 16 37 H 0.05 2.04 7.17 -2.39 -0.02 2.02 16 38 H 0.04 1.74 6.24 -2.39 -0.01 1.72 16 39 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.14 5.12 8.09 -2.39 -0.02 5.10 16 41 H 0.16 4.41 8.08 -2.39 -0.02 4.39 16 42 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 43 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 46 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -69.08 387.30 1.52 -67.56 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.88 Total: 28.27 kcal Atomic # 6 Polarization: -63.15 SS G_CDS: 4.41 Total: -58.73 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -1.10 Total: -95.25 kcal Atomic # 8 Polarization: -82.94 SS G_CDS: -4.25 Total: -87.18 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.88 Total: 44.24 kcal Atomic # 16 Polarization: 101.40 SS G_CDS: -0.30 Total: 101.10 kcal Total: -69.08 1.52 -67.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.716 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds