Wall clock time and date at job start Tue Mar 31 2020 14:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47329 * 2 1 4 4 C 1.52997 * 109.46919 * 169.97221 * 3 2 1 5 5 C 1.53003 * 109.46700 * 185.35216 * 4 3 2 6 6 C 1.52995 * 109.47036 * 289.97629 * 3 2 1 7 7 N 1.46504 * 109.46798 * 287.85069 * 6 3 2 8 8 C 1.46501 * 120.00020 * 274.05857 * 7 6 3 9 9 C 1.50697 * 109.47381 * 276.02923 * 8 7 6 10 10 H 1.08000 * 119.99712 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00256 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99571 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00175 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47266 * 90.00079 * 13 11 9 15 15 H 1.48505 * 109.47386 * 209.99706 * 13 11 9 16 16 H 1.48493 * 109.47307 * 329.99927 * 13 11 9 17 17 S 1.65601 * 119.99838 * 94.06536 * 7 6 3 18 18 O 1.42100 * 106.40107 * 134.82284 * 17 7 6 19 19 O 1.42094 * 106.40552 * 1.89917 * 17 7 6 20 20 C 1.76198 * 107.21490 * 248.35932 * 17 7 6 21 21 C 1.38235 * 120.00201 * 105.15914 * 20 17 7 22 22 C 1.38237 * 120.00019 * 179.97438 * 21 20 17 23 23 C 1.38226 * 120.00073 * 359.97438 * 22 21 20 24 24 C 1.38230 * 120.00337 * 0.27687 * 23 22 21 25 25 C 1.38237 * 119.99899 * 359.51288 * 24 23 22 26 26 H 1.09004 * 109.46928 * 189.77455 * 1 2 3 27 27 H 1.08996 * 109.47072 * 309.77314 * 1 2 3 28 28 H 1.08997 * 109.47398 * 69.77788 * 1 2 3 29 29 H 1.09001 * 109.47265 * 239.99917 * 2 1 3 30 30 H 1.08999 * 109.47166 * 119.99972 * 2 1 3 31 31 H 1.09001 * 109.46529 * 49.97350 * 3 2 1 32 32 H 1.08999 * 109.47155 * 305.34881 * 4 3 2 33 33 H 1.08991 * 109.47467 * 65.35589 * 4 3 2 34 34 H 1.09001 * 109.47172 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47158 * 300.00264 * 5 4 3 36 36 H 1.09003 * 109.47151 * 60.00191 * 5 4 3 37 37 H 1.08997 * 109.47428 * 167.85289 * 6 3 2 38 38 H 1.09003 * 109.47166 * 47.85058 * 6 3 2 39 39 H 1.09000 * 109.46786 * 36.02863 * 8 7 6 40 40 H 1.08995 * 109.47061 * 156.02177 * 8 7 6 41 41 H 0.96996 * 119.99741 * 180.02562 * 12 11 9 42 42 H 1.08004 * 119.99668 * 359.97438 * 21 20 17 43 43 H 1.08004 * 119.99698 * 180.02562 * 22 21 20 44 44 H 1.08005 * 119.99951 * 179.97438 * 23 22 21 45 45 H 1.08006 * 120.00171 * 179.72401 * 24 23 22 46 46 H 1.07999 * 120.00597 * 180.27796 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5492 1.4497 0.2512 5 6 4.0371 2.8938 0.3840 6 6 1.7454 2.0876 -1.3557 7 7 2.6379 1.5212 -2.3701 8 6 3.9735 2.0891 -2.5701 9 6 3.8810 3.2781 -3.4914 10 1 2.9232 3.5803 -3.8885 11 6 5.0193 3.9795 -3.8280 12 7 6.1857 3.6112 -3.3447 13 14 4.9048 5.4529 -4.9705 14 1 4.6827 6.6840 -4.1701 15 1 6.1691 5.5833 -5.7385 16 1 3.7716 5.2630 -5.9111 17 16 2.1368 0.2392 -3.2909 18 8 2.5007 0.5411 -4.6309 19 8 0.8025 -0.0437 -2.8927 20 6 3.1041 -1.1544 -2.8147 21 6 2.5461 -2.1485 -2.0328 22 6 3.3049 -3.2421 -1.6596 23 6 4.6214 -3.3419 -2.0689 24 6 5.1810 -2.3454 -2.8465 25 6 4.4211 -1.2539 -3.2233 26 1 -0.3633 -1.0128 0.1745 27 1 -0.3633 0.6574 0.7898 28 1 -0.3634 0.3552 -0.9643 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5380 2.0053 0.7870 32 1 3.7671 0.9066 1.1707 33 1 4.0589 0.9695 -0.5840 34 1 5.1124 2.8990 0.5625 35 1 3.8191 3.4370 -0.5355 36 1 3.5274 3.3741 1.2193 37 1 1.9075 3.1634 -1.2891 38 1 0.7096 1.8926 -1.6334 39 1 4.3817 2.4043 -1.6099 40 1 4.6258 1.3363 -3.0126 41 1 6.9864 4.1049 -3.5812 42 1 1.5173 -2.0706 -1.7134 43 1 2.8688 -4.0189 -1.0490 44 1 5.2144 -4.1962 -1.7770 45 1 6.2110 -2.4213 -3.1625 46 1 4.8568 -0.4775 -3.8345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104751109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:27 Heat of formation + Delta-G solvation = -46.684556 kcal Electronic energy + Delta-G solvation = -28172.729849 eV Core-core repulsion = 24575.626503 eV Total energy + Delta-G solvation = -3597.103346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.01274 -38.15459 -36.58484 -35.14575 -33.97259 -32.21104 -31.75999 -31.13673 -30.85518 -28.19959 -25.99748 -24.63606 -22.94954 -22.76970 -22.25944 -21.45047 -19.55241 -18.49892 -17.49696 -16.81387 -16.51781 -15.77314 -15.64208 -14.97913 -14.79432 -14.46497 -14.27513 -14.24263 -13.68196 -13.36688 -13.25590 -12.85625 -12.68427 -12.50076 -12.19869 -12.04703 -12.00125 -11.71940 -11.46615 -11.33374 -11.22083 -11.15207 -11.08771 -11.00234 -10.73176 -10.59407 -10.52043 -10.31586 -10.11208 -10.05670 -9.84233 -9.75324 -9.58442 -9.18791 -8.85472 -8.40867 -7.95917 -6.06014 -4.08254 0.88778 1.17335 1.43178 3.31756 3.38796 3.45078 3.52073 3.85833 4.29712 4.45573 4.78182 4.96741 5.05553 5.08356 5.19184 5.22743 5.28229 5.31676 5.44856 5.62732 5.69235 5.74267 5.81760 5.88291 5.91476 5.97309 6.04808 6.09134 6.24760 6.27526 6.29903 6.32406 6.34182 6.44331 6.45284 6.51217 6.63319 6.64287 6.79035 6.88486 6.96484 6.99062 7.30375 7.41495 7.63718 7.93240 8.22519 8.95172 9.56309 11.01877 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.006085 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.214898 B = 4600.342413 C = 5275.213972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.118 4.118 5 C -0.160 4.160 6 C 0.128 3.872 7 N -0.976 5.976 8 C 0.230 3.770 9 C -0.522 4.522 10 H 0.062 0.938 11 C 0.062 3.938 12 N -0.897 5.897 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.272 1.272 17 S 2.680 3.320 18 O -0.948 6.948 19 O -0.975 6.975 20 C -0.670 4.670 21 C -0.024 4.024 22 C -0.149 4.149 23 C -0.073 4.073 24 C -0.142 4.142 25 C -0.012 4.012 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.262 0.738 42 H 0.142 0.858 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.129 0.871 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.839 -10.580 8.028 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C -0.128 4.128 4 C -0.156 4.156 5 C -0.217 4.217 6 C 0.002 3.998 7 N -0.816 5.816 8 C 0.108 3.892 9 C -0.562 4.562 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.536 5.536 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 S 2.770 3.230 18 O -0.938 6.938 19 O -0.965 6.965 20 C -0.755 4.755 21 C -0.043 4.043 22 C -0.168 4.168 23 C -0.091 4.091 24 C -0.161 4.161 25 C -0.031 4.031 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.159 0.841 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.269 -10.533 7.382 13.900 hybrid contribution 0.833 0.335 -0.177 0.915 sum -4.436 -10.198 7.206 13.251 Atomic orbital electron populations 1.21860 0.95618 1.00812 1.02898 1.21859 0.96409 0.96877 1.01527 1.21731 0.96634 0.96097 0.98303 1.21640 0.95098 0.97696 1.01129 1.21988 1.00444 0.96708 1.02523 1.21304 0.93055 0.99240 0.86216 1.57298 1.27098 1.45304 1.51858 1.19714 0.76087 0.93941 0.99429 1.21526 0.94135 1.12332 1.28166 0.91979 1.24892 0.95191 0.97715 0.96172 1.69913 0.98283 1.40574 1.44866 0.86573 0.77646 0.82661 0.81063 1.20717 1.21236 1.19696 1.02348 0.73262 0.73185 0.74236 1.93608 1.83758 1.82993 1.33452 1.93469 1.34225 1.85318 1.83535 1.31367 1.09970 1.21000 1.13154 1.20972 0.99825 0.91620 0.91864 1.21206 0.94819 0.98756 1.02016 1.21388 0.95078 0.97771 0.94855 1.21296 1.00394 0.94713 0.99689 1.21131 0.91532 0.96957 0.93516 0.93631 0.93498 0.90322 0.92227 0.92673 0.90751 0.93514 0.90668 0.93150 0.89577 0.94090 0.89439 0.90311 0.91144 0.95495 0.92805 0.84065 0.85609 0.85772 0.85267 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.30 37.16 0.35 -1.66 16 2 C -0.13 -1.79 4.91 -26.73 -0.13 -1.92 16 3 C -0.11 -1.57 2.18 -90.62 -0.20 -1.76 16 4 C -0.12 -1.84 4.84 -26.73 -0.13 -1.97 16 5 C -0.16 -2.61 8.46 37.16 0.31 -2.30 16 6 C 0.13 2.16 4.90 -4.04 -0.02 2.14 16 7 N -0.98 -19.23 2.15 -115.67 -0.25 -19.47 16 8 C 0.23 5.28 3.65 -5.19 -0.02 5.26 16 9 C -0.52 -13.83 9.38 -34.44 -0.32 -14.15 16 10 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.90 -24.76 13.29 55.43 0.74 -24.02 16 13 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 S 2.68 52.77 4.63 -107.50 -0.50 52.27 16 18 O -0.95 -22.59 17.43 -57.17 -1.00 -23.59 16 19 O -0.98 -18.41 12.34 -57.17 -0.71 -19.12 16 20 C -0.67 -11.45 5.45 -39.58 -0.22 -11.67 16 21 C -0.02 -0.35 7.68 -39.58 -0.30 -0.65 16 22 C -0.15 -1.83 10.05 -39.59 -0.40 -2.22 16 23 C -0.07 -0.87 10.05 -39.59 -0.40 -1.26 16 24 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.01 -0.21 8.83 -39.58 -0.35 -0.56 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.54 8.03 -51.93 -0.42 0.12 16 28 H 0.08 1.15 5.35 -51.93 -0.28 0.87 16 29 H 0.06 0.88 1.47 -51.93 -0.08 0.80 16 30 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 32 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.07 1.32 5.56 -51.93 -0.29 1.03 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.63 5.05 -51.93 -0.26 1.37 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.50 7.17 -51.93 -0.37 1.12 16 38 H 0.08 1.26 5.50 -51.93 -0.29 0.98 16 39 H 0.07 1.58 3.10 -51.93 -0.16 1.42 16 40 H 0.03 0.65 5.98 -51.93 -0.31 0.34 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.14 1.92 6.49 -52.48 -0.34 1.58 16 43 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 46 H 0.14 2.59 6.85 -52.49 -0.36 2.23 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -30.39 355.35 -10.19 -40.58 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.49 Total: 5.24 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: -2.32 Total: -33.50 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.49 Total: -43.50 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.70 Total: -42.71 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 52.77 SS G_CDS: -0.50 Total: 52.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.39 -10.19 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104751109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.106 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds