Wall clock time and date at job start Tue Mar 31 2020 14:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47329 * 2 1 4 4 C 1.52997 * 109.46919 * 169.97221 * 3 2 1 5 5 C 1.53003 * 109.46700 * 185.35216 * 4 3 2 6 6 C 1.52995 * 109.47036 * 289.97629 * 3 2 1 7 7 N 1.46504 * 109.46798 * 287.85069 * 6 3 2 8 8 C 1.46501 * 120.00020 * 274.05857 * 7 6 3 9 9 C 1.50697 * 109.47381 * 276.02923 * 8 7 6 10 10 H 1.08000 * 119.99712 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00256 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99571 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00175 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47266 * 90.00079 * 13 11 9 15 15 H 1.48505 * 109.47386 * 209.99706 * 13 11 9 16 16 H 1.48493 * 109.47307 * 329.99927 * 13 11 9 17 17 S 1.65601 * 119.99838 * 94.06536 * 7 6 3 18 18 O 1.42100 * 106.40107 * 134.82284 * 17 7 6 19 19 O 1.42094 * 106.40552 * 1.89917 * 17 7 6 20 20 C 1.76198 * 107.21490 * 248.35932 * 17 7 6 21 21 C 1.38235 * 120.00201 * 105.15914 * 20 17 7 22 22 C 1.38237 * 120.00019 * 179.97438 * 21 20 17 23 23 C 1.38226 * 120.00073 * 359.97438 * 22 21 20 24 24 C 1.38230 * 120.00337 * 0.27687 * 23 22 21 25 25 C 1.38237 * 119.99899 * 359.51288 * 24 23 22 26 26 H 1.09004 * 109.46928 * 189.77455 * 1 2 3 27 27 H 1.08996 * 109.47072 * 309.77314 * 1 2 3 28 28 H 1.08997 * 109.47398 * 69.77788 * 1 2 3 29 29 H 1.09001 * 109.47265 * 239.99917 * 2 1 3 30 30 H 1.08999 * 109.47166 * 119.99972 * 2 1 3 31 31 H 1.09001 * 109.46529 * 49.97350 * 3 2 1 32 32 H 1.08999 * 109.47155 * 305.34881 * 4 3 2 33 33 H 1.08991 * 109.47467 * 65.35589 * 4 3 2 34 34 H 1.09001 * 109.47172 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47158 * 300.00264 * 5 4 3 36 36 H 1.09003 * 109.47151 * 60.00191 * 5 4 3 37 37 H 1.08997 * 109.47428 * 167.85289 * 6 3 2 38 38 H 1.09003 * 109.47166 * 47.85058 * 6 3 2 39 39 H 1.09000 * 109.46786 * 36.02863 * 8 7 6 40 40 H 1.08995 * 109.47061 * 156.02177 * 8 7 6 41 41 H 0.96996 * 119.99741 * 180.02562 * 12 11 9 42 42 H 1.08004 * 119.99668 * 359.97438 * 21 20 17 43 43 H 1.08004 * 119.99698 * 180.02562 * 22 21 20 44 44 H 1.08005 * 119.99951 * 179.97438 * 23 22 21 45 45 H 1.08006 * 120.00171 * 179.72401 * 24 23 22 46 46 H 1.07999 * 120.00597 * 180.27796 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5492 1.4497 0.2512 5 6 4.0371 2.8938 0.3840 6 6 1.7454 2.0876 -1.3557 7 7 2.6379 1.5212 -2.3701 8 6 3.9735 2.0891 -2.5701 9 6 3.8810 3.2781 -3.4914 10 1 2.9232 3.5803 -3.8885 11 6 5.0193 3.9795 -3.8280 12 7 6.1857 3.6112 -3.3447 13 14 4.9048 5.4529 -4.9705 14 1 4.6827 6.6840 -4.1701 15 1 6.1691 5.5833 -5.7385 16 1 3.7716 5.2630 -5.9111 17 16 2.1368 0.2392 -3.2909 18 8 2.5007 0.5411 -4.6309 19 8 0.8025 -0.0437 -2.8927 20 6 3.1041 -1.1544 -2.8147 21 6 2.5461 -2.1485 -2.0328 22 6 3.3049 -3.2421 -1.6596 23 6 4.6214 -3.3419 -2.0689 24 6 5.1810 -2.3454 -2.8465 25 6 4.4211 -1.2539 -3.2233 26 1 -0.3633 -1.0128 0.1745 27 1 -0.3633 0.6574 0.7898 28 1 -0.3634 0.3552 -0.9643 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5380 2.0053 0.7870 32 1 3.7671 0.9066 1.1707 33 1 4.0589 0.9695 -0.5840 34 1 5.1124 2.8990 0.5625 35 1 3.8191 3.4370 -0.5355 36 1 3.5274 3.3741 1.2193 37 1 1.9075 3.1634 -1.2891 38 1 0.7096 1.8926 -1.6334 39 1 4.3817 2.4043 -1.6099 40 1 4.6258 1.3363 -3.0126 41 1 6.9864 4.1049 -3.5812 42 1 1.5173 -2.0706 -1.7134 43 1 2.8688 -4.0189 -1.0490 44 1 5.2144 -4.1962 -1.7770 45 1 6.2110 -2.4213 -3.1625 46 1 4.8568 -0.4775 -3.8345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104751109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:26 Heat of formation + Delta-G solvation = -64.388353 kcal Electronic energy + Delta-G solvation = -28173.497543 eV Core-core repulsion = 24575.626503 eV Total energy + Delta-G solvation = -3597.871041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13741 -39.47858 -38.19801 -36.79618 -35.59113 -34.05942 -32.97701 -32.27081 -31.95241 -29.78624 -27.62456 -25.98358 -24.29515 -24.02805 -23.74348 -22.61969 -20.83108 -19.83923 -19.07236 -18.33431 -18.32350 -17.21440 -16.89809 -16.54573 -16.28265 -15.81566 -15.59595 -15.47769 -14.98591 -14.88038 -14.47843 -14.21317 -13.98821 -13.89989 -13.69594 -13.30586 -13.22970 -13.20985 -13.06743 -12.98908 -12.86556 -12.79848 -12.40578 -12.34452 -12.27035 -12.12404 -11.87392 -11.78948 -11.67526 -11.42748 -11.29564 -11.18687 -11.02945 -10.45427 -10.31691 -9.95013 -9.59265 -8.13692 -6.21756 -0.48632 -0.10989 0.33895 1.38584 1.41236 1.51469 2.12830 2.44540 2.60736 2.83871 3.16813 3.47076 3.87090 3.93207 3.97232 4.02701 4.10309 4.12327 4.34052 4.41927 4.48558 4.55278 4.68100 4.72944 4.76139 4.78988 4.86728 4.97117 4.99418 5.01321 5.16000 5.19594 5.25421 5.27171 5.30237 5.34291 5.39896 5.40858 5.44802 5.59787 5.63178 5.70560 5.74592 5.81215 5.92129 6.05630 6.22900 6.85684 7.44689 8.92542 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.006085 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.214898 B = 4600.342413 C = 5275.213972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C -0.100 4.100 4 C -0.115 4.115 5 C -0.155 4.155 6 C 0.120 3.880 7 N -0.978 5.978 8 C 0.244 3.756 9 C -0.538 4.538 10 H 0.046 0.954 11 C 0.018 3.982 12 N -0.920 5.920 13 Si 0.944 3.056 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.280 1.280 17 S 2.681 3.319 18 O -1.005 7.005 19 O -0.972 6.972 20 C -0.678 4.678 21 C -0.030 4.030 22 C -0.138 4.138 23 C -0.058 4.058 24 C -0.146 4.146 25 C -0.043 4.043 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.008 0.992 41 H 0.265 0.735 42 H 0.151 0.849 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.149 0.851 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -12.806 10.576 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C -0.119 4.119 4 C -0.153 4.153 5 C -0.212 4.212 6 C -0.006 4.006 7 N -0.817 5.817 8 C 0.121 3.879 9 C -0.578 4.578 10 H 0.064 0.936 11 C -0.181 4.181 12 N -0.560 5.560 13 Si 0.770 3.230 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.205 1.205 17 S 2.776 3.224 18 O -0.996 6.996 19 O -0.963 6.963 20 C -0.767 4.767 21 C -0.049 4.049 22 C -0.157 4.157 23 C -0.076 4.076 24 C -0.164 4.164 25 C -0.062 4.062 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.168 0.832 43 H 0.186 0.814 44 H 0.187 0.813 45 H 0.166 0.834 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.644 -12.709 9.926 17.085 hybrid contribution 0.929 0.904 -0.922 1.591 sum -4.714 -11.805 9.004 15.577 Atomic orbital electron populations 1.21838 0.94913 1.02027 1.02269 1.21894 0.97021 0.96020 1.01958 1.21685 0.96151 0.97087 0.97027 1.21594 0.95545 0.96932 1.01188 1.21901 1.00172 0.97314 1.01808 1.21521 0.92812 0.99017 0.87207 1.57119 1.26103 1.46104 1.52404 1.19384 0.77534 0.92229 0.98732 1.21842 0.93539 1.13655 1.28732 0.93551 1.25545 0.95064 1.00031 0.97498 1.69987 0.98629 1.41531 1.45837 0.85775 0.77335 0.80480 0.79434 1.19269 1.20624 1.20535 1.01855 0.73552 0.73837 0.73202 1.93534 1.84678 1.84327 1.37012 1.93460 1.34211 1.85398 1.83187 1.30716 1.09765 1.20593 1.15672 1.21194 1.00581 0.91737 0.91398 1.21702 0.94664 0.98298 1.01025 1.21906 0.95283 0.97847 0.92533 1.21581 1.01114 0.94065 0.99675 1.21030 0.92208 0.98053 0.94955 0.92243 0.91809 0.92542 0.93340 0.90633 0.88338 0.91225 0.93116 0.94120 0.92795 0.91556 0.90373 0.89711 0.90410 0.97381 0.92641 0.83193 0.81432 0.81329 0.83366 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.30 71.98 0.67 -2.91 16 2 C -0.13 -3.32 4.91 30.59 0.15 -3.17 16 3 C -0.10 -2.75 2.18 -10.80 -0.02 -2.77 16 4 C -0.12 -3.47 4.84 30.59 0.15 -3.32 16 5 C -0.15 -5.03 8.46 71.98 0.61 -4.42 16 6 C 0.12 4.12 4.90 86.38 0.42 4.54 16 7 N -0.98 -40.40 2.15 -519.85 -1.12 -41.51 16 8 C 0.24 11.88 3.65 85.63 0.31 12.19 16 9 C -0.54 -30.04 9.38 25.60 0.24 -29.80 16 10 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 11 C 0.02 1.00 5.46 84.65 0.46 1.47 16 12 N -0.92 -52.44 13.29 21.45 0.28 -52.16 16 13 Si 0.94 44.84 29.54 68.60 2.03 46.87 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 16 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 17 S 2.68 110.80 4.63 -56.49 -0.26 110.53 16 18 O -1.01 -51.61 17.43 -128.00 -2.23 -53.84 16 19 O -0.97 -37.50 12.34 -128.00 -1.58 -39.08 16 20 C -0.68 -23.50 5.45 22.27 0.12 -23.38 16 21 C -0.03 -0.81 7.68 22.27 0.17 -0.64 16 22 C -0.14 -2.78 10.05 22.27 0.22 -2.56 16 23 C -0.06 -1.13 10.05 22.26 0.22 -0.91 16 24 C -0.15 -3.80 10.05 22.27 0.22 -3.58 16 25 C -0.04 -1.50 8.83 22.27 0.20 -1.31 16 26 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.06 1.26 8.03 -2.39 -0.02 1.24 16 28 H 0.06 1.57 5.35 -2.39 -0.01 1.56 16 29 H 0.05 1.35 1.47 -2.39 0.00 1.34 16 30 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 31 H 0.10 2.27 8.03 -2.39 -0.02 2.25 16 32 H 0.07 1.78 8.11 -2.39 -0.02 1.76 16 33 H 0.05 1.79 5.56 -2.39 -0.01 1.78 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 2.11 5.05 -2.39 -0.01 2.09 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.78 7.17 -2.39 -0.02 2.77 16 38 H 0.08 2.78 5.50 -2.39 -0.01 2.76 16 39 H 0.08 3.68 3.10 -2.39 -0.01 3.67 16 40 H 0.01 0.43 5.98 -2.39 -0.01 0.42 16 41 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.15 3.74 6.49 -2.91 -0.02 3.72 16 43 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 46 H 0.11 4.45 6.85 -2.91 -0.02 4.43 16 Total: -1.00 -69.63 355.35 2.26 -67.37 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.99 Total: 22.38 kcal Atomic # 6 Polarization: -64.71 SS G_CDS: 4.15 Total: -60.56 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -0.83 Total: -93.67 kcal Atomic # 8 Polarization: -89.11 SS G_CDS: -3.81 Total: -92.92 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 110.80 SS G_CDS: -0.26 Total: 110.53 kcal Total: -69.63 2.26 -67.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104751109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.983 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds