Wall clock time and date at job start Tue Mar 31 2020 13:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 119.99723 * 2 1 4 4 C 1.38228 * 120.00086 * 180.02562 * 3 2 1 5 5 C 1.38244 * 120.00053 * 359.97438 * 4 3 2 6 6 S 1.76199 * 120.00167 * 179.97438 * 5 4 3 7 7 O 1.42108 * 106.40168 * 347.81644 * 6 5 4 8 8 O 1.42101 * 106.39763 * 214.90059 * 6 5 4 9 9 N 1.65595 * 107.22156 * 101.35665 * 6 5 4 10 10 C 1.46506 * 119.99674 * 81.81067 * 9 6 5 11 11 C 1.50702 * 109.46490 * 92.58610 * 10 9 6 12 12 H 1.08000 * 120.00434 * 355.11137 * 11 10 9 13 13 C 1.37881 * 119.99567 * 175.10866 * 11 10 9 14 14 N 1.31512 * 119.99908 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99923 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47213 * 90.00431 * 15 13 11 17 17 H 1.48502 * 109.47152 * 210.00218 * 15 13 11 18 18 H 1.48499 * 109.47210 * 330.00226 * 15 13 11 19 19 C 1.46496 * 120.00238 * 262.08764 * 9 6 5 20 20 C 1.53006 * 109.46990 * 101.92621 * 19 9 6 21 21 C 1.53004 * 109.47015 * 56.18131 * 20 19 9 22 22 C 1.53002 * 109.47166 * 176.17780 * 20 19 9 23 23 C 1.52992 * 109.47558 * 296.17968 * 20 19 9 24 24 C 1.38230 * 119.99651 * 0.25127 * 5 4 3 25 25 C 1.38228 * 120.00248 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46903 * 90.00290 * 1 2 3 27 27 H 1.09000 * 109.46750 * 209.99713 * 1 2 3 28 28 H 1.08991 * 109.47383 * 330.00284 * 1 2 3 29 29 H 1.08003 * 120.00148 * 359.97143 * 3 2 1 30 30 H 1.08002 * 120.00376 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.47059 * 212.58302 * 10 9 6 32 32 H 1.08992 * 109.47051 * 332.58571 * 10 9 6 33 33 H 0.97002 * 119.99960 * 180.02562 * 14 13 11 34 34 H 1.08991 * 109.47581 * 221.92836 * 19 9 6 35 35 H 1.09004 * 109.47313 * 341.93047 * 19 9 6 36 36 H 1.09000 * 109.46856 * 46.42436 * 21 20 19 37 37 H 1.09000 * 109.47334 * 166.42614 * 21 20 19 38 38 H 1.08999 * 109.47012 * 286.42746 * 21 20 19 39 39 H 1.09001 * 109.46964 * 60.00087 * 22 20 19 40 40 H 1.08996 * 109.47129 * 180.02562 * 22 20 19 41 41 H 1.09005 * 109.46781 * 300.00226 * 22 20 19 42 42 H 1.09004 * 109.47289 * 68.84625 * 23 20 19 43 43 H 1.08997 * 109.47585 * 188.84876 * 23 20 19 44 44 H 1.09004 * 109.47038 * 308.85456 * 23 20 19 45 45 H 1.08007 * 119.99901 * 179.72820 * 24 5 4 46 46 H 1.08005 * 120.00442 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0005 6 16 6.0337 0.0002 -0.0019 7 8 6.4347 1.3326 -0.2905 8 8 6.4343 -1.1182 -0.7817 9 7 6.5252 -0.3106 1.5486 10 6 6.5699 -1.6900 2.0403 11 6 7.9477 -2.2583 1.8171 12 1 8.6899 -1.6819 1.2848 13 6 8.2606 -3.5141 2.2925 14 7 7.3569 -4.2157 2.9411 15 14 9.9682 -4.2190 2.0152 16 1 10.8495 -3.8419 3.1494 17 1 9.8841 -5.6988 1.9245 18 1 10.5284 -3.6766 0.7514 19 6 6.9095 0.7942 2.4306 20 6 5.7654 1.0935 3.4013 21 6 5.4069 -0.1772 4.1744 22 6 6.2018 2.1822 4.3839 23 6 4.5434 1.5749 2.6166 24 6 3.5806 -1.1970 -0.0053 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5137 29 1 1.6581 2.1325 -0.0005 30 1 4.1204 2.1326 -0.0010 31 1 6.3394 -1.7036 3.1055 32 1 5.8372 -2.2913 1.5022 33 1 7.5772 -5.0991 3.2758 34 1 7.8005 0.5166 2.9936 35 1 7.1195 1.6808 1.8321 36 1 6.3191 -0.6530 4.5344 37 1 4.7722 0.0802 5.0224 38 1 4.8739 -0.8642 3.5170 39 1 6.4572 3.0875 3.8331 40 1 5.3869 2.3951 5.0757 41 1 7.0724 1.8391 4.9430 42 1 4.1377 0.7485 2.0330 43 1 3.7849 1.9362 3.3109 44 1 4.8371 2.3830 1.9465 45 1 4.1207 -2.1324 -0.0097 46 1 1.6583 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104764963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:43 Heat of formation + Delta-G solvation = -53.207380 kcal Electronic energy + Delta-G solvation = -27669.087960 eV Core-core repulsion = 24071.701762 eV Total energy + Delta-G solvation = -3597.386197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.34440 -38.00833 -36.57484 -35.14577 -34.02656 -33.03423 -32.16413 -30.99350 -27.88469 -27.44228 -26.83042 -26.62330 -24.89441 -22.74624 -22.18243 -21.71635 -18.91206 -18.33604 -17.45164 -16.68027 -16.32422 -15.75318 -15.29769 -15.05479 -14.58547 -14.33850 -14.27657 -14.09869 -13.85148 -13.71692 -13.38514 -12.98144 -12.55390 -12.42801 -12.36578 -12.27992 -12.03210 -11.90113 -11.64675 -11.42274 -11.38328 -11.20549 -11.14228 -11.07566 -11.03543 -10.90234 -10.75004 -10.53368 -10.37086 -10.22320 -10.04922 -9.78218 -9.58599 -8.96003 -8.82416 -8.39078 -7.93470 -6.03620 -4.05781 0.85534 1.16178 1.42073 3.33488 3.40095 3.44546 3.48202 3.83770 4.36232 4.48001 4.68344 4.74160 4.95696 4.99863 5.15404 5.16997 5.23080 5.30784 5.33729 5.38334 5.42789 5.61396 5.68561 5.73255 5.85430 5.88418 5.90144 5.97450 6.03609 6.06591 6.20046 6.24017 6.26973 6.28742 6.35344 6.44580 6.48330 6.52277 6.62244 6.71543 6.90819 6.94914 7.27887 7.44679 7.64363 7.94720 8.24812 8.96617 9.58385 11.04551 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.005284 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.027034 B = 5297.517161 C = 5960.154493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.039 4.039 3 C -0.151 4.151 4 C -0.012 4.012 5 C -0.679 4.679 6 S 2.681 3.319 7 O -0.980 6.980 8 O -0.944 6.944 9 N -0.975 5.975 10 C 0.239 3.761 11 C -0.521 4.521 12 H 0.060 0.940 13 C 0.062 3.938 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.131 3.869 20 C -0.087 4.087 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.164 4.164 24 C -0.008 4.008 25 C -0.145 4.145 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.141 0.859 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 10.948 -0.370 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.040 4.040 3 C -0.170 4.170 4 C -0.031 4.031 5 C -0.763 4.763 6 S 2.770 3.230 7 O -0.970 6.970 8 O -0.934 6.934 9 N -0.814 5.814 10 C 0.118 3.882 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.140 4.140 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 C 0.005 3.995 20 C -0.089 4.089 21 C -0.195 4.195 22 C -0.195 4.195 23 C -0.221 4.221 24 C -0.027 4.027 25 C -0.164 4.164 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.158 0.842 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.752 10.891 -1.006 16.054 hybrid contribution 0.127 -0.647 0.245 0.703 sum -11.625 10.244 -0.761 15.513 Atomic orbital electron populations 1.20892 0.91058 1.03113 1.02586 1.20162 0.96069 0.93412 0.94328 1.21058 0.94153 0.97614 1.04187 1.20919 0.94469 0.96741 0.90961 1.31394 1.28883 0.99100 1.16945 1.02297 0.73665 0.73181 0.73845 1.93471 1.81376 1.38142 1.84033 1.93609 1.80017 1.52279 1.67474 1.57328 1.78893 1.14790 1.30359 1.19523 0.97296 0.73620 0.97782 1.21518 0.97929 1.01133 1.35518 0.92167 1.24886 0.97337 0.96701 0.95037 1.69911 1.33734 1.12149 1.37956 0.86561 0.84427 0.78169 0.78707 1.20717 1.21199 1.19686 1.21355 0.96780 0.89030 0.92378 1.21007 0.96026 0.95926 0.95936 1.22071 1.01811 0.96600 0.98993 1.21805 1.01142 0.97942 0.98566 1.22471 0.97704 1.01516 1.00420 1.21015 0.94585 0.96992 0.90130 1.21142 0.94260 0.97766 1.03253 0.90750 0.91139 0.91272 0.85629 0.84365 0.91732 0.95525 0.92816 0.89703 0.90043 0.91432 0.94170 0.91658 0.92839 0.92970 0.92446 0.91396 0.92895 0.92577 0.84165 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.04 -0.46 5.88 -104.62 -0.62 -1.08 16 3 C -0.15 -1.82 9.70 -39.59 -0.38 -2.21 16 4 C -0.01 -0.17 6.53 -39.58 -0.26 -0.43 16 5 C -0.68 -11.36 4.10 -39.58 -0.16 -11.52 16 6 S 2.68 53.90 5.24 -107.50 -0.56 53.34 16 7 O -0.98 -19.84 15.43 -57.17 -0.88 -20.72 16 8 O -0.94 -22.65 16.92 -57.17 -0.97 -23.61 16 9 N -0.97 -19.66 2.32 -115.66 -0.27 -19.93 16 10 C 0.24 5.67 4.10 -5.19 -0.02 5.65 16 11 C -0.52 -14.20 9.38 -34.44 -0.32 -14.53 16 12 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.13 2.26 4.77 -4.04 -0.02 2.24 16 20 C -0.09 -1.28 0.85 -154.51 -0.13 -1.41 16 21 C -0.14 -2.21 6.83 37.16 0.25 -1.95 16 22 C -0.14 -1.67 8.42 37.16 0.31 -1.36 16 23 C -0.16 -2.26 6.48 37.15 0.24 -2.02 16 24 C -0.01 -0.13 9.53 -39.58 -0.38 -0.51 16 25 C -0.15 -1.94 9.70 -39.58 -0.38 -2.32 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.14 1.84 6.60 -52.49 -0.35 1.49 16 31 H 0.07 1.52 4.23 -51.93 -0.22 1.30 16 32 H 0.03 0.67 7.51 -51.93 -0.39 0.28 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.34 6.73 -51.93 -0.35 0.99 16 36 H 0.07 1.19 7.10 -51.93 -0.37 0.82 16 37 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.06 1.14 6.29 -51.93 -0.33 0.81 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.00 3.96 -51.93 -0.21 0.80 16 43 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 44 H 0.06 0.73 7.12 -51.93 -0.37 0.37 16 45 H 0.14 2.39 7.49 -52.48 -0.39 1.99 16 46 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -31.69 368.16 -10.18 -41.87 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.15 Total: 1.99 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: -1.60 Total: -30.46 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.47 Total: -44.55 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.85 Total: -44.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.56 Total: 53.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.69 -10.18 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104764963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.339 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds