Wall clock time and date at job start Tue Mar 31 2020 13:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 119.99723 * 2 1 4 4 C 1.38228 * 120.00086 * 180.02562 * 3 2 1 5 5 C 1.38244 * 120.00053 * 359.97438 * 4 3 2 6 6 S 1.76199 * 120.00167 * 179.97438 * 5 4 3 7 7 O 1.42108 * 106.40168 * 347.81644 * 6 5 4 8 8 O 1.42101 * 106.39763 * 214.90059 * 6 5 4 9 9 N 1.65595 * 107.22156 * 101.35665 * 6 5 4 10 10 C 1.46506 * 119.99674 * 81.81067 * 9 6 5 11 11 C 1.50702 * 109.46490 * 92.58610 * 10 9 6 12 12 H 1.08000 * 120.00434 * 355.11137 * 11 10 9 13 13 C 1.37881 * 119.99567 * 175.10866 * 11 10 9 14 14 N 1.31512 * 119.99908 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99923 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47213 * 90.00431 * 15 13 11 17 17 H 1.48502 * 109.47152 * 210.00218 * 15 13 11 18 18 H 1.48499 * 109.47210 * 330.00226 * 15 13 11 19 19 C 1.46496 * 120.00238 * 262.08764 * 9 6 5 20 20 C 1.53006 * 109.46990 * 101.92621 * 19 9 6 21 21 C 1.53004 * 109.47015 * 56.18131 * 20 19 9 22 22 C 1.53002 * 109.47166 * 176.17780 * 20 19 9 23 23 C 1.52992 * 109.47558 * 296.17968 * 20 19 9 24 24 C 1.38230 * 119.99651 * 0.25127 * 5 4 3 25 25 C 1.38228 * 120.00248 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46903 * 90.00290 * 1 2 3 27 27 H 1.09000 * 109.46750 * 209.99713 * 1 2 3 28 28 H 1.08991 * 109.47383 * 330.00284 * 1 2 3 29 29 H 1.08003 * 120.00148 * 359.97143 * 3 2 1 30 30 H 1.08002 * 120.00376 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.47059 * 212.58302 * 10 9 6 32 32 H 1.08992 * 109.47051 * 332.58571 * 10 9 6 33 33 H 0.97002 * 119.99960 * 180.02562 * 14 13 11 34 34 H 1.08991 * 109.47581 * 221.92836 * 19 9 6 35 35 H 1.09004 * 109.47313 * 341.93047 * 19 9 6 36 36 H 1.09000 * 109.46856 * 46.42436 * 21 20 19 37 37 H 1.09000 * 109.47334 * 166.42614 * 21 20 19 38 38 H 1.08999 * 109.47012 * 286.42746 * 21 20 19 39 39 H 1.09001 * 109.46964 * 60.00087 * 22 20 19 40 40 H 1.08996 * 109.47129 * 180.02562 * 22 20 19 41 41 H 1.09005 * 109.46781 * 300.00226 * 22 20 19 42 42 H 1.09004 * 109.47289 * 68.84625 * 23 20 19 43 43 H 1.08997 * 109.47585 * 188.84876 * 23 20 19 44 44 H 1.09004 * 109.47038 * 308.85456 * 23 20 19 45 45 H 1.08007 * 119.99901 * 179.72820 * 24 5 4 46 46 H 1.08005 * 120.00442 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0005 6 16 6.0337 0.0002 -0.0019 7 8 6.4347 1.3326 -0.2905 8 8 6.4343 -1.1182 -0.7817 9 7 6.5252 -0.3106 1.5486 10 6 6.5699 -1.6900 2.0403 11 6 7.9477 -2.2583 1.8171 12 1 8.6899 -1.6819 1.2848 13 6 8.2606 -3.5141 2.2925 14 7 7.3569 -4.2157 2.9411 15 14 9.9682 -4.2190 2.0152 16 1 10.8495 -3.8419 3.1494 17 1 9.8841 -5.6988 1.9245 18 1 10.5284 -3.6766 0.7514 19 6 6.9095 0.7942 2.4306 20 6 5.7654 1.0935 3.4013 21 6 5.4069 -0.1772 4.1744 22 6 6.2018 2.1822 4.3839 23 6 4.5434 1.5749 2.6166 24 6 3.5806 -1.1970 -0.0053 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5137 29 1 1.6581 2.1325 -0.0005 30 1 4.1204 2.1326 -0.0010 31 1 6.3394 -1.7036 3.1055 32 1 5.8372 -2.2913 1.5022 33 1 7.5772 -5.0991 3.2758 34 1 7.8005 0.5166 2.9936 35 1 7.1195 1.6808 1.8321 36 1 6.3191 -0.6530 4.5344 37 1 4.7722 0.0802 5.0224 38 1 4.8739 -0.8642 3.5170 39 1 6.4572 3.0875 3.8331 40 1 5.3869 2.3951 5.0757 41 1 7.0724 1.8391 4.9430 42 1 4.1377 0.7485 2.0330 43 1 3.7849 1.9362 3.3109 44 1 4.8371 2.3830 1.9465 45 1 4.1207 -2.1324 -0.0097 46 1 1.6583 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104764963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:42 Heat of formation + Delta-G solvation = -72.281798 kcal Electronic energy + Delta-G solvation = -27669.915089 eV Core-core repulsion = 24071.701762 eV Total energy + Delta-G solvation = -3598.213326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.42124 -39.35419 -38.25061 -36.84670 -35.70377 -34.11324 -33.98623 -32.07766 -29.63945 -28.36989 -28.02326 -27.80336 -26.52194 -24.03385 -23.81832 -22.81191 -20.26514 -19.65206 -19.07675 -18.32708 -18.21301 -17.23787 -16.58515 -16.35435 -16.11046 -15.78663 -15.48854 -15.37558 -15.08454 -14.65004 -14.59907 -14.34862 -14.23241 -13.98994 -13.39015 -13.24526 -13.21571 -13.11853 -13.06523 -13.04195 -12.91868 -12.87631 -12.70145 -12.47953 -12.39391 -12.29047 -12.24327 -12.06059 -11.82344 -11.66552 -11.48645 -11.37684 -11.29261 -10.49358 -10.02615 -9.90537 -9.60584 -8.16051 -6.25263 -0.52221 -0.14712 0.34507 1.38291 1.40583 1.51295 2.08629 2.43124 2.56441 2.85328 3.14237 3.39349 3.80339 3.88020 3.91532 3.94466 3.97232 4.07941 4.32422 4.36733 4.38665 4.66552 4.68131 4.70712 4.78418 4.84054 4.84311 4.96852 5.00716 5.02401 5.03563 5.11997 5.13986 5.14429 5.19165 5.27182 5.27745 5.31301 5.40890 5.50723 5.54274 5.60433 5.62770 5.75538 5.92337 6.00013 6.18759 6.81737 7.41490 8.90575 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.005284 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.027034 B = 5297.517161 C = 5960.154493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.028 4.028 3 C -0.143 4.143 4 C -0.016 4.016 5 C -0.685 4.685 6 S 2.682 3.318 7 O -0.988 6.988 8 O -0.998 6.998 9 N -0.979 5.979 10 C 0.256 3.744 11 C -0.542 4.542 12 H 0.045 0.955 13 C 0.017 3.983 14 N -0.922 5.922 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.123 3.877 20 C -0.082 4.082 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.163 4.163 24 C -0.033 4.033 25 C -0.149 4.149 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.165 0.835 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.006 0.994 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.805 13.009 0.290 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.028 4.028 3 C -0.161 4.161 4 C -0.035 4.035 5 C -0.775 4.775 6 S 2.777 3.223 7 O -0.978 6.978 8 O -0.988 6.988 9 N -0.817 5.817 10 C 0.133 3.867 11 C -0.581 4.581 12 H 0.063 0.937 13 C -0.183 4.183 14 N -0.562 5.562 15 Si 0.774 3.226 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.003 4.003 20 C -0.084 4.084 21 C -0.190 4.190 22 C -0.190 4.190 23 C -0.220 4.220 24 C -0.053 4.053 25 C -0.168 4.168 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.183 0.817 30 H 0.165 0.835 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.252 12.969 -0.334 19.273 hybrid contribution 0.782 -1.242 0.002 1.468 sum -13.471 11.727 -0.331 17.863 Atomic orbital electron populations 1.21001 0.87845 1.04642 1.04003 1.20651 0.98262 0.92439 0.91453 1.21495 0.93064 0.99415 1.02156 1.21116 0.95806 0.95790 0.90809 1.30611 1.25658 1.00688 1.20515 1.01747 0.75145 0.72177 0.73222 1.93440 1.82557 1.37734 1.84076 1.93535 1.82128 1.54130 1.69015 1.57135 1.80020 1.14053 1.30485 1.19122 0.94937 0.75190 0.97438 1.21843 0.99252 1.01660 1.35371 0.93654 1.25596 1.00738 0.97020 0.94902 1.69990 1.35193 1.12467 1.38537 0.85706 0.80639 0.77693 0.78583 1.19196 1.20381 1.20378 1.21595 0.97798 0.88210 0.92664 1.20962 0.95524 0.96165 0.95756 1.21969 1.00730 0.96780 0.99475 1.21776 1.01720 0.97246 0.98237 1.22458 0.97526 1.01292 1.00756 1.20952 0.96169 0.95903 0.92247 1.21404 0.92904 0.99786 1.02708 0.89136 0.90253 0.89221 0.81724 0.83466 0.91578 0.97592 0.92526 0.90935 0.89193 0.93896 0.91818 0.93809 0.91551 0.91077 0.92721 0.92634 0.90649 0.91821 0.86754 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.01 71.24 0.71 -0.67 16 2 C -0.03 -0.56 5.88 -19.87 -0.12 -0.67 16 3 C -0.14 -2.89 9.70 22.27 0.22 -2.67 16 4 C -0.02 -0.42 6.53 22.27 0.15 -0.28 16 5 C -0.68 -23.30 4.10 22.27 0.09 -23.21 16 6 S 2.68 113.38 5.24 -56.49 -0.30 113.08 16 7 O -0.99 -40.96 15.43 -128.00 -1.98 -42.93 16 8 O -1.00 -51.52 16.92 -128.00 -2.17 -53.69 16 9 N -0.98 -41.57 2.32 -519.84 -1.21 -42.78 16 10 C 0.26 12.91 4.10 85.63 0.35 13.26 16 11 C -0.54 -31.05 9.38 25.60 0.24 -30.81 16 12 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 13 C 0.02 0.95 5.46 84.66 0.46 1.41 16 14 N -0.92 -53.63 13.29 21.45 0.28 -53.34 16 15 Si 0.95 45.36 29.54 68.60 2.03 47.39 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 18 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 19 C 0.12 4.35 4.77 86.38 0.41 4.76 16 20 C -0.08 -2.35 0.85 -52.18 -0.04 -2.40 16 21 C -0.13 -4.26 6.83 71.98 0.49 -3.77 16 22 C -0.13 -2.94 8.42 71.98 0.61 -2.33 16 23 C -0.16 -4.17 6.48 71.98 0.47 -3.70 16 24 C -0.03 -1.11 9.53 22.27 0.21 -0.90 16 25 C -0.15 -3.79 9.70 22.27 0.22 -3.57 16 26 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 28 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 29 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.15 3.61 6.60 -2.91 -0.02 3.59 16 31 H 0.07 3.30 4.23 -2.39 -0.01 3.29 16 32 H 0.01 0.33 7.51 -2.39 -0.02 0.31 16 33 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.09 2.99 6.73 -2.38 -0.02 2.97 16 36 H 0.04 1.56 7.10 -2.39 -0.02 1.55 16 37 H 0.06 1.71 8.07 -2.39 -0.02 1.69 16 38 H 0.04 1.58 6.29 -2.39 -0.02 1.56 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.05 1.58 3.96 -2.38 -0.01 1.57 16 43 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 44 H 0.06 1.52 7.12 -2.38 -0.02 1.50 16 45 H 0.11 4.32 7.49 -2.91 -0.02 4.29 16 46 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -71.95 368.16 2.09 -69.86 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.96 Total: 17.96 kcal Atomic # 6 Polarization: -60.01 SS G_CDS: 4.46 Total: -55.55 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -0.92 Total: -96.12 kcal Atomic # 8 Polarization: -92.48 SS G_CDS: -4.14 Total: -96.62 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 113.38 SS G_CDS: -0.30 Total: 113.08 kcal Total: -71.95 2.09 -69.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104764963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.422 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds