Wall clock time and date at job start Tue Mar 31 2020 14:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 C 1.53001 * 109.47142 * 239.99862 * 2 1 3 5 5 C 1.53001 * 109.47121 * 120.00213 * 2 1 3 6 6 N 1.46491 * 109.47430 * 63.77672 * 5 2 1 7 7 C 1.46497 * 120.00497 * 276.77521 * 6 5 2 8 8 C 1.50704 * 109.47090 * 273.88314 * 7 6 5 9 9 H 1.07997 * 119.99853 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99918 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99938 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99992 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47463 * 89.99678 * 12 10 8 14 14 H 1.48500 * 109.47001 * 209.99490 * 12 10 8 15 15 H 1.48495 * 109.47095 * 329.99242 * 12 10 8 16 16 S 1.65605 * 119.99994 * 96.77354 * 6 5 2 17 17 O 1.42102 * 104.27526 * 333.92791 * 16 6 5 18 18 O 1.42101 * 104.27750 * 206.07610 * 16 6 5 19 19 C 1.81395 * 104.45177 * 90.00217 * 16 6 5 20 20 C 1.50694 * 109.47216 * 180.02562 * 19 16 6 21 21 C 1.38238 * 120.00509 * 90.00004 * 20 19 16 22 22 C 1.38231 * 120.00132 * 179.97438 * 21 20 19 23 23 C 1.38237 * 120.00150 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99976 * 0.27630 * 23 22 21 25 25 C 1.38235 * 119.99681 * 269.97615 * 20 19 16 26 26 H 1.09004 * 109.47556 * 291.04752 * 1 2 3 27 27 H 1.09003 * 109.47159 * 51.04851 * 1 2 3 28 28 H 1.09001 * 109.47586 * 171.05018 * 1 2 3 29 29 H 1.09000 * 109.47524 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47491 * 299.99973 * 3 2 1 31 31 H 1.09006 * 109.47193 * 59.99931 * 3 2 1 32 32 H 1.08995 * 109.47454 * 300.00058 * 4 2 1 33 33 H 1.08999 * 109.46836 * 60.00575 * 4 2 1 34 34 H 1.09007 * 109.47065 * 180.02562 * 4 2 1 35 35 H 1.09010 * 109.46827 * 303.77525 * 5 2 1 36 36 H 1.09000 * 109.47418 * 183.78536 * 5 2 1 37 37 H 1.09005 * 109.47186 * 33.88145 * 7 6 5 38 38 H 1.08993 * 109.47749 * 153.88084 * 7 6 5 39 39 H 0.97002 * 120.00195 * 180.02562 * 11 10 8 40 40 H 1.09000 * 109.46928 * 59.99904 * 19 16 6 41 41 H 1.09006 * 109.46901 * 300.00407 * 19 16 6 42 42 H 1.08004 * 119.99562 * 359.97263 * 21 20 19 43 43 H 1.07998 * 119.99773 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.99688 * 180.02562 * 23 22 21 45 45 H 1.07997 * 120.00015 * 179.72617 * 24 23 22 46 46 H 1.07999 * 120.00090 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 7 1.6273 -2.1262 1.2046 7 6 0.2877 -2.5110 1.6557 8 6 0.3053 -2.7385 3.1453 9 1 1.2227 -2.6098 3.7004 10 6 -0.8499 -3.1110 3.7995 11 7 -0.8344 -3.3100 5.0993 12 14 -2.4365 -3.3343 2.8392 13 1 -2.5407 -4.7413 2.3756 14 1 -3.5934 -3.0143 3.7134 15 1 -2.4367 -2.4250 1.6652 16 16 2.6753 -3.2796 0.6442 17 8 3.5393 -2.5711 -0.2337 18 8 1.8309 -4.3160 0.1625 19 6 3.5769 -3.8273 2.1199 20 6 4.5735 -4.8897 1.7341 21 6 5.8571 -4.5325 1.3657 22 6 6.7714 -5.5072 1.0123 23 6 6.4023 -6.8393 1.0279 24 6 5.1172 -7.1962 1.3913 25 6 4.2042 -6.2218 1.7491 26 1 -0.3634 0.3691 0.9591 27 1 -0.3633 0.6461 -0.7992 28 1 -0.3634 -1.0151 -0.1599 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.6223 -0.2480 2.1380 36 1 3.1278 -0.6629 1.2838 37 1 -0.4183 -1.7152 1.4180 38 1 -0.0159 -3.4284 1.1516 39 1 -1.6470 -3.5724 5.5595 40 1 2.8729 -4.2351 2.8453 41 1 4.1021 -2.9796 2.5602 42 1 6.1456 -3.4917 1.3539 43 1 7.7740 -5.2280 0.7241 44 1 7.1168 -7.6008 0.7522 45 1 4.8275 -8.2366 1.3992 46 1 3.2017 -6.5010 2.0377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104765435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:10 Heat of formation + Delta-G solvation = -53.278787 kcal Electronic energy + Delta-G solvation = -27147.628632 eV Core-core repulsion = 23550.239338 eV Total energy + Delta-G solvation = -3597.389294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.20193 -38.09263 -36.57146 -35.37504 -34.15267 -32.89739 -32.28000 -30.89170 -28.35345 -27.25627 -26.88237 -26.76805 -25.02484 -22.57842 -22.01141 -21.34108 -18.94438 -17.99340 -17.18546 -17.08053 -16.70685 -15.93380 -15.85007 -15.09425 -15.06664 -14.50082 -14.31137 -14.04197 -13.68054 -13.40503 -13.29380 -13.06750 -12.74433 -12.59728 -12.38874 -12.30342 -12.17093 -11.85961 -11.62036 -11.51519 -11.42407 -11.29298 -11.25722 -11.16207 -11.04773 -10.98039 -10.72708 -10.58488 -10.38289 -10.20160 -10.10120 -10.00244 -9.61104 -8.92550 -8.68778 -8.66707 -7.98036 -6.20272 -4.21059 0.66987 1.40113 1.45359 3.22178 3.27693 3.33288 3.35287 3.78053 4.27993 4.32232 4.60151 4.67693 4.92244 4.99327 5.10908 5.13826 5.14544 5.15100 5.25419 5.35890 5.49265 5.57446 5.62525 5.77936 5.85034 5.92106 6.02063 6.05116 6.09809 6.13029 6.17757 6.19991 6.30778 6.42955 6.43658 6.49515 6.51713 6.55371 6.57495 6.75590 6.85474 6.91439 6.97733 7.11802 7.38134 7.52919 8.35745 8.80619 9.40858 10.92034 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.005705 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.337092 B = 4906.819022 C = 6739.120139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.135 4.135 5 C 0.141 3.859 6 N -0.974 5.974 7 C 0.203 3.797 8 C -0.548 4.548 9 H 0.079 0.921 10 C 0.078 3.922 11 N -0.894 5.894 12 Si 0.867 3.133 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.261 1.261 16 S 2.608 3.392 17 O -0.962 6.962 18 O -0.955 6.955 19 C -0.593 4.593 20 C -0.080 4.080 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.106 4.106 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.266 0.734 40 H 0.154 0.846 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.990 1.183 -7.965 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.194 4.194 4 C -0.193 4.193 5 C 0.014 3.986 6 N -0.811 5.811 7 C 0.080 3.920 8 C -0.587 4.587 9 H 0.097 0.903 10 C -0.126 4.126 11 N -0.531 5.531 12 Si 0.694 3.306 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.186 1.186 16 S 2.701 3.299 17 O -0.953 6.953 18 O -0.946 6.946 19 C -0.719 4.719 20 C -0.082 4.082 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.124 4.124 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.172 0.828 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.916 0.859 -8.666 13.964 hybrid contribution -0.870 -0.149 0.653 1.098 sum 10.046 0.710 -8.013 12.870 Atomic orbital electron populations 1.22041 0.94578 1.02200 1.01260 1.20956 0.96247 0.95147 0.96441 1.21794 1.00801 0.95299 1.01520 1.21994 1.02401 0.99106 0.95788 1.21218 0.98432 0.81259 0.97649 1.57142 1.26335 1.16545 1.81032 1.19849 0.79283 0.97221 0.95686 1.21497 0.98055 1.47962 0.91142 0.90307 1.24836 0.98782 0.94278 0.94693 1.69888 1.28749 1.46538 1.07951 0.86970 0.83458 0.79694 0.80515 1.19675 1.21021 1.18582 1.05074 0.74438 0.74067 0.76279 1.93563 1.69176 1.71632 1.60891 1.93543 1.64656 1.58350 1.78021 1.29840 1.11021 1.07079 1.23937 1.19157 0.94236 0.93511 1.01313 1.21173 0.92651 1.00148 0.98913 1.21124 0.99535 0.92976 1.00282 1.21206 0.96452 0.96284 0.99974 1.21178 0.93559 0.99521 0.99411 1.21313 1.00501 0.92065 0.98569 0.92270 0.93628 0.91702 0.92689 0.92844 0.92618 0.93828 0.93835 0.90522 0.89874 0.91326 0.93023 0.93868 0.92436 0.82828 0.84784 0.85388 0.85722 0.85920 0.85575 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.02 37.15 0.26 -1.99 16 2 C -0.09 -1.30 0.85 -154.51 -0.13 -1.43 16 3 C -0.14 -1.66 8.46 37.16 0.31 -1.35 16 4 C -0.14 -2.16 6.83 37.16 0.25 -1.91 16 5 C 0.14 2.31 4.59 -4.05 -0.02 2.29 16 6 N -0.97 -18.72 2.08 -115.67 -0.24 -18.96 16 7 C 0.20 4.55 3.72 -5.19 -0.02 4.54 16 8 C -0.55 -14.06 9.94 -34.44 -0.34 -14.40 16 9 H 0.08 2.12 8.06 -52.49 -0.42 1.69 16 10 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 11 N -0.89 -25.72 13.96 55.43 0.77 -24.94 16 12 Si 0.87 20.47 27.47 -169.99 -4.67 15.80 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 16 S 2.61 49.15 4.51 -107.50 -0.49 48.66 16 17 O -0.96 -17.83 13.30 -57.54 -0.77 -18.60 16 18 O -0.96 -21.12 16.54 -57.54 -0.95 -22.07 16 19 C -0.59 -9.83 6.30 36.00 0.23 -9.60 16 20 C -0.08 -1.27 5.14 -104.63 -0.54 -1.81 16 21 C -0.11 -1.52 9.70 -39.58 -0.38 -1.91 16 22 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 24 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 25 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 26 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 27 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 28 H 0.06 1.13 6.11 -51.93 -0.32 0.82 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.78 6.19 -51.93 -0.32 0.46 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.24 6.74 -51.93 -0.35 0.89 16 35 H 0.08 1.37 8.12 -51.92 -0.42 0.95 16 36 H 0.07 0.99 7.54 -51.93 -0.39 0.60 16 37 H 0.05 1.13 4.10 -51.93 -0.21 0.92 16 38 H 0.04 1.03 6.26 -51.93 -0.33 0.70 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.15 2.73 8.09 -51.92 -0.42 2.31 16 41 H 0.13 1.90 8.09 -51.92 -0.42 1.48 16 42 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -31.08 372.98 -10.18 -41.26 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.41 Total: 6.33 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: -2.05 Total: -33.09 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.53 Total: -43.91 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -1.72 Total: -40.67 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.49 Total: 48.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.08 -10.18 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104765435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.022 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds