Wall clock time and date at job start Tue Mar 31 2020 14:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 C 1.53001 * 109.47142 * 239.99862 * 2 1 3 5 5 C 1.53001 * 109.47121 * 120.00213 * 2 1 3 6 6 N 1.46491 * 109.47430 * 63.77672 * 5 2 1 7 7 C 1.46497 * 120.00497 * 276.77521 * 6 5 2 8 8 C 1.50704 * 109.47090 * 273.88314 * 7 6 5 9 9 H 1.07997 * 119.99853 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99918 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99938 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99992 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47463 * 89.99678 * 12 10 8 14 14 H 1.48500 * 109.47001 * 209.99490 * 12 10 8 15 15 H 1.48495 * 109.47095 * 329.99242 * 12 10 8 16 16 S 1.65605 * 119.99994 * 96.77354 * 6 5 2 17 17 O 1.42102 * 104.27526 * 333.92791 * 16 6 5 18 18 O 1.42101 * 104.27750 * 206.07610 * 16 6 5 19 19 C 1.81395 * 104.45177 * 90.00217 * 16 6 5 20 20 C 1.50694 * 109.47216 * 180.02562 * 19 16 6 21 21 C 1.38238 * 120.00509 * 90.00004 * 20 19 16 22 22 C 1.38231 * 120.00132 * 179.97438 * 21 20 19 23 23 C 1.38237 * 120.00150 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99976 * 0.27630 * 23 22 21 25 25 C 1.38235 * 119.99681 * 269.97615 * 20 19 16 26 26 H 1.09004 * 109.47556 * 291.04752 * 1 2 3 27 27 H 1.09003 * 109.47159 * 51.04851 * 1 2 3 28 28 H 1.09001 * 109.47586 * 171.05018 * 1 2 3 29 29 H 1.09000 * 109.47524 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47491 * 299.99973 * 3 2 1 31 31 H 1.09006 * 109.47193 * 59.99931 * 3 2 1 32 32 H 1.08995 * 109.47454 * 300.00058 * 4 2 1 33 33 H 1.08999 * 109.46836 * 60.00575 * 4 2 1 34 34 H 1.09007 * 109.47065 * 180.02562 * 4 2 1 35 35 H 1.09010 * 109.46827 * 303.77525 * 5 2 1 36 36 H 1.09000 * 109.47418 * 183.78536 * 5 2 1 37 37 H 1.09005 * 109.47186 * 33.88145 * 7 6 5 38 38 H 1.08993 * 109.47749 * 153.88084 * 7 6 5 39 39 H 0.97002 * 120.00195 * 180.02562 * 11 10 8 40 40 H 1.09000 * 109.46928 * 59.99904 * 19 16 6 41 41 H 1.09006 * 109.46901 * 300.00407 * 19 16 6 42 42 H 1.08004 * 119.99562 * 359.97263 * 21 20 19 43 43 H 1.07998 * 119.99773 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.99688 * 180.02562 * 23 22 21 45 45 H 1.07997 * 120.00015 * 179.72617 * 24 23 22 46 46 H 1.07999 * 120.00090 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 7 1.6273 -2.1262 1.2046 7 6 0.2877 -2.5110 1.6557 8 6 0.3053 -2.7385 3.1453 9 1 1.2227 -2.6098 3.7004 10 6 -0.8499 -3.1110 3.7995 11 7 -0.8344 -3.3100 5.0993 12 14 -2.4365 -3.3343 2.8392 13 1 -2.5407 -4.7413 2.3756 14 1 -3.5934 -3.0143 3.7134 15 1 -2.4367 -2.4250 1.6652 16 16 2.6753 -3.2796 0.6442 17 8 3.5393 -2.5711 -0.2337 18 8 1.8309 -4.3160 0.1625 19 6 3.5769 -3.8273 2.1199 20 6 4.5735 -4.8897 1.7341 21 6 5.8571 -4.5325 1.3657 22 6 6.7714 -5.5072 1.0123 23 6 6.4023 -6.8393 1.0279 24 6 5.1172 -7.1962 1.3913 25 6 4.2042 -6.2218 1.7491 26 1 -0.3634 0.3691 0.9591 27 1 -0.3633 0.6461 -0.7992 28 1 -0.3634 -1.0151 -0.1599 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.6223 -0.2480 2.1380 36 1 3.1278 -0.6629 1.2838 37 1 -0.4183 -1.7152 1.4180 38 1 -0.0159 -3.4284 1.1516 39 1 -1.6470 -3.5724 5.5595 40 1 2.8729 -4.2351 2.8453 41 1 4.1021 -2.9796 2.5602 42 1 6.1456 -3.4917 1.3539 43 1 7.7740 -5.2280 0.7241 44 1 7.1168 -7.6008 0.7522 45 1 4.8275 -8.2366 1.3992 46 1 3.2017 -6.5010 2.0377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104765435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:09 Heat of formation + Delta-G solvation = -71.248573 kcal Electronic energy + Delta-G solvation = -27148.407860 eV Core-core repulsion = 23550.239338 eV Total energy + Delta-G solvation = -3598.168522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22910 -39.42428 -38.14760 -36.93906 -35.76014 -34.19228 -34.02019 -31.89635 -30.11115 -28.42905 -28.06859 -27.99731 -26.51713 -23.73808 -23.59167 -22.51327 -20.28542 -19.42206 -19.08090 -18.56791 -17.96320 -17.36635 -17.26018 -16.41441 -16.15359 -16.10343 -15.75507 -15.35047 -15.06371 -14.65423 -14.39573 -14.39507 -14.23287 -13.91279 -13.84170 -13.69551 -13.59484 -13.27830 -13.10514 -13.06564 -12.88944 -12.75963 -12.57967 -12.42449 -12.35572 -12.27992 -12.01396 -11.99434 -11.77252 -11.74884 -11.62501 -11.39418 -11.35053 -10.75430 -9.94590 -9.87398 -9.47672 -8.30459 -6.33741 -0.76330 0.36127 0.38334 1.34472 1.38399 1.45577 1.78169 2.33438 2.72125 2.87899 3.05237 3.18077 3.41315 3.77003 3.85686 3.96449 4.06387 4.07014 4.14403 4.23252 4.27673 4.50608 4.55290 4.62053 4.65056 4.74928 4.83905 4.90814 4.95634 4.98235 5.00737 5.03850 5.06547 5.12055 5.16612 5.31130 5.37905 5.43943 5.44910 5.45965 5.49730 5.50887 5.57390 5.63447 5.85474 5.99791 6.30006 6.70548 7.30966 8.84603 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.005705 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.337092 B = 4906.819022 C = 6739.120139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.131 4.131 4 C -0.134 4.134 5 C 0.130 3.870 6 N -0.978 5.978 7 C 0.213 3.787 8 C -0.540 4.540 9 H 0.057 0.943 10 C 0.025 3.975 11 N -0.937 5.937 12 Si 0.916 3.084 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.241 1.241 16 S 2.610 3.390 17 O -0.960 6.960 18 O -0.995 6.995 19 C -0.577 4.577 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.136 4.136 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.016 0.984 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.267 0.733 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.149 0.851 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.843 1.962 -9.515 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.189 4.189 4 C -0.192 4.192 5 C 0.004 3.996 6 N -0.814 5.814 7 C 0.089 3.911 8 C -0.579 4.579 9 H 0.075 0.925 10 C -0.174 4.174 11 N -0.577 5.577 12 Si 0.740 3.260 13 H -0.200 1.200 14 H -0.204 1.204 15 H -0.165 1.165 16 S 2.707 3.293 17 O -0.950 6.950 18 O -0.986 6.986 19 C -0.706 4.706 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.155 4.155 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.151 0.849 41 H 0.174 0.826 42 H 0.161 0.839 43 H 0.178 0.822 44 H 0.179 0.821 45 H 0.167 0.833 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.762 1.675 -10.257 16.458 hybrid contribution -1.263 -0.448 1.138 1.758 sum 11.499 1.226 -9.119 14.727 Atomic orbital electron populations 1.22031 0.95100 1.01150 1.01891 1.20983 0.95873 0.96820 0.95124 1.21754 1.01466 0.92997 1.02635 1.21980 1.02185 0.97894 0.97119 1.21522 0.99797 0.79765 0.98472 1.57061 1.25337 1.18072 1.80929 1.19555 0.81388 0.96951 0.93249 1.21749 0.97042 1.46392 0.92710 0.92504 1.25572 1.02022 0.94430 0.95404 1.70005 1.29658 1.48505 1.09541 0.86164 0.79972 0.79795 0.80034 1.19955 1.20411 1.16464 1.04905 0.74244 0.73372 0.76813 1.93549 1.68700 1.71358 1.61417 1.93484 1.66099 1.59591 1.79435 1.29613 1.10896 1.08397 1.21687 1.19247 0.95111 0.93280 1.03621 1.21470 0.92087 1.01684 0.98842 1.21602 1.00634 0.92744 0.98729 1.21699 0.96293 0.97225 0.97924 1.21520 0.93866 1.00130 0.98676 1.21439 1.00772 0.92968 1.00345 0.92637 0.91416 0.94104 0.91660 0.91398 0.91879 0.96493 0.91958 0.90740 0.90223 0.89282 0.92002 0.95352 0.92405 0.84907 0.82611 0.83938 0.82191 0.82118 0.83301 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 7.02 71.98 0.51 -3.83 16 2 C -0.09 -2.46 0.85 -52.19 -0.04 -2.51 16 3 C -0.13 -2.81 8.46 71.98 0.61 -2.20 16 4 C -0.13 -4.10 6.83 71.98 0.49 -3.61 16 5 C 0.13 4.17 4.59 86.38 0.40 4.56 16 6 N -0.98 -38.15 2.08 -519.86 -1.08 -39.23 16 7 C 0.21 9.77 3.72 85.63 0.32 10.09 16 8 C -0.54 -28.56 9.94 25.60 0.25 -28.31 16 9 H 0.06 3.19 8.06 -2.91 -0.02 3.16 16 10 C 0.03 1.39 5.47 84.66 0.46 1.85 16 11 N -0.94 -55.57 13.96 21.45 0.30 -55.27 16 12 Si 0.92 42.55 27.47 68.60 1.88 44.44 16 13 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.24 -10.32 6.54 99.48 0.65 -9.66 16 16 S 2.61 100.60 4.51 -56.49 -0.26 100.34 16 17 O -0.96 -35.30 13.30 -127.65 -1.70 -37.00 16 18 O -1.00 -45.98 16.54 -127.65 -2.11 -48.09 16 19 C -0.58 -19.75 6.30 71.23 0.45 -19.30 16 20 C -0.11 -3.53 5.14 -19.87 -0.10 -3.63 16 21 C -0.12 -3.19 9.70 22.27 0.22 -2.97 16 22 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 23 C -0.11 -2.24 10.05 22.27 0.22 -2.01 16 24 C -0.12 -3.01 10.05 22.27 0.22 -2.78 16 25 C -0.14 -4.28 9.70 22.27 0.22 -4.06 16 26 H 0.05 1.68 7.92 -2.39 -0.02 1.66 16 27 H 0.07 1.69 8.12 -2.39 -0.02 1.67 16 28 H 0.04 1.40 6.11 -2.39 -0.01 1.39 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.02 0.58 6.19 -2.39 -0.01 0.57 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 2.28 6.74 -2.38 -0.02 2.27 16 35 H 0.08 2.60 8.12 -2.38 -0.02 2.58 16 36 H 0.09 2.45 7.54 -2.39 -0.02 2.44 16 37 H 0.06 2.71 4.10 -2.38 -0.01 2.70 16 38 H 0.03 1.39 6.26 -2.39 -0.01 1.38 16 39 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.13 5.09 8.09 -2.39 -0.02 5.07 16 41 H 0.16 4.44 8.09 -2.39 -0.02 4.42 16 42 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 43 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 46 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -69.16 372.98 2.37 -66.78 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.89 Total: 28.97 kcal Atomic # 6 Polarization: -65.39 SS G_CDS: 4.44 Total: -60.94 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -0.78 Total: -94.50 kcal Atomic # 8 Polarization: -81.28 SS G_CDS: -3.81 Total: -85.09 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.44 kcal Atomic # 16 Polarization: 100.60 SS G_CDS: -0.26 Total: 100.34 kcal Total: -69.16 2.37 -66.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104765435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.464 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds