Wall clock time and date at job start Tue Mar 31 2020 14:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50710 * 109.47231 * 2 1 4 4 C 1.38162 * 120.02759 * 265.32633 * 3 2 1 5 5 C 1.38245 * 120.05311 * 180.29440 * 4 3 2 6 6 C 1.38289 * 120.11209 * 359.67666 * 5 4 3 7 7 C 1.38130 * 120.05592 * 0.02562 * 6 5 4 8 8 C 1.38717 * 120.02439 * 85.00121 * 3 2 1 9 9 O 1.35898 * 120.05474 * 359.97438 * 8 3 2 10 10 C 1.42898 * 116.99602 * 174.28206 * 9 8 3 11 11 H 1.09006 * 109.47447 * 324.66603 * 10 9 8 12 12 C 1.50701 * 109.47383 * 204.66505 * 10 9 8 13 13 O 1.21297 * 119.99699 * 355.00115 * 12 10 9 14 14 N 1.34778 * 120.00321 * 175.00514 * 12 10 9 15 15 C 1.37098 * 120.00164 * 180.02562 * 14 12 10 16 16 H 1.08005 * 119.99615 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00335 * 179.97438 * 15 14 12 18 18 N 1.31408 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00450 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46986 * 59.99902 * 19 17 15 21 21 H 1.48491 * 109.47314 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47058 * 300.00208 * 19 17 15 23 23 C 1.50703 * 109.47188 * 84.66550 * 10 9 8 24 24 C 1.38235 * 119.99734 * 39.71995 * 23 10 9 25 25 C 1.38233 * 120.00070 * 179.80691 * 24 23 10 26 26 C 1.38243 * 119.99890 * 0.40733 * 25 24 23 27 27 C 1.38231 * 119.99736 * 359.85128 * 26 25 24 28 28 C 1.38230 * 120.00262 * 220.00110 * 23 10 9 29 29 H 1.09004 * 109.47142 * 299.99719 * 1 2 3 30 30 H 1.09000 * 109.47582 * 59.99823 * 1 2 3 31 31 H 1.09003 * 109.47250 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47142 * 240.00281 * 2 1 3 33 33 H 1.09000 * 109.47582 * 120.00177 * 2 1 3 34 34 H 1.07996 * 119.97734 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.94667 * 179.69658 * 5 4 3 36 36 H 1.07994 * 119.97731 * 180.02562 * 6 5 4 37 37 H 1.08000 * 120.02888 * 180.02562 * 7 6 5 38 38 H 0.96995 * 119.99909 * 359.97438 * 14 12 10 39 39 H 0.96997 * 120.00190 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.00287 * 0.02562 * 24 23 10 41 41 H 1.07996 * 120.00189 * 180.23278 * 25 24 23 42 42 H 1.08000 * 119.99769 * 179.82952 * 26 25 24 43 43 H 1.08001 * 119.99749 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.00212 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3547 2.0402 -1.1922 5 6 2.8214 3.3415 -1.1923 6 6 2.9604 4.0288 -0.0004 7 6 2.6336 3.4162 1.1937 8 6 2.1651 2.1102 1.1965 9 8 1.8418 1.5055 2.3698 10 6 2.1211 2.2282 3.5705 11 1 3.0400 2.8008 3.4446 12 6 2.2854 1.2596 4.7132 13 8 2.0854 0.0760 4.5385 14 7 2.6547 1.7083 5.9293 15 6 2.8047 0.8270 6.9687 16 1 2.6266 -0.2268 6.8131 17 6 3.1858 1.2896 8.2223 18 7 3.4030 2.5717 8.4114 19 14 3.3895 0.0889 9.6387 20 1 4.4312 -0.9116 9.2935 21 1 3.7994 0.8284 10.8594 22 1 2.1006 -0.6047 9.8889 23 6 0.9808 3.1674 3.8682 24 6 -0.3233 2.7599 3.6578 25 6 -1.3694 3.6199 3.9346 26 6 -1.1112 4.8906 4.4140 27 6 0.1930 5.3000 4.6193 28 6 1.2390 4.4385 4.3462 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2470 1.5057 -2.1244 35 1 3.0775 3.8224 -2.1249 36 1 3.3248 5.0455 -0.0031 37 1 2.7420 3.9535 2.1242 38 1 2.8150 2.6547 6.0689 39 1 3.6687 2.8947 9.2866 40 1 -0.5249 1.7682 3.2804 41 1 -2.3884 3.3002 3.7737 42 1 -1.9285 5.5635 4.6276 43 1 0.3947 6.2929 4.9934 44 1 2.2580 4.7584 4.5067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107239991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:27 Heat of formation + Delta-G solvation = -29.201923 kcal Electronic energy + Delta-G solvation = -27610.642991 eV Core-core repulsion = 23878.853797 eV Total energy + Delta-G solvation = -3731.789194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55290 -39.02875 -37.94955 -36.86060 -34.03586 -33.99508 -32.10797 -31.04937 -30.69099 -30.00661 -28.98385 -27.11092 -24.71531 -23.76902 -22.48109 -22.33034 -21.50275 -20.80999 -19.33886 -18.11473 -17.78187 -16.88554 -16.26137 -15.68206 -15.55284 -15.46535 -14.69905 -14.51105 -14.33023 -14.12610 -13.95925 -13.65103 -13.47263 -13.41265 -13.15776 -12.99017 -12.77033 -12.35707 -12.09984 -12.00535 -11.66303 -11.60503 -11.45529 -11.39253 -11.11515 -10.84571 -10.71626 -10.56486 -10.49436 -10.44475 -10.28846 -9.58573 -8.93139 -8.74734 -8.67936 -8.23078 -8.06449 -7.92616 -6.49569 -3.90637 1.41398 1.50314 1.57116 1.64424 3.15231 3.19689 3.22930 3.33738 3.69357 3.86646 3.99606 4.17797 4.79664 4.84616 4.88652 4.99554 5.04436 5.14577 5.17943 5.19268 5.29408 5.32854 5.36012 5.49090 5.54662 5.58991 5.69180 5.72087 5.76645 5.84050 6.01693 6.06340 6.11560 6.15718 6.22726 6.28012 6.43793 6.49036 6.58041 6.63688 6.66018 6.70911 6.76462 6.93885 7.19313 7.47897 7.63594 7.95154 8.49584 9.07636 9.40371 9.90543 10.67495 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.004154 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.461072 B = 6738.623991 C = 7621.541131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C -0.113 4.113 4 C -0.085 4.085 5 C -0.164 4.164 6 C -0.086 4.086 7 C -0.205 4.205 8 C 0.139 3.861 9 O -0.269 6.269 10 C 0.119 3.881 11 H 0.089 0.911 12 C 0.448 3.552 13 O -0.570 6.570 14 N -0.547 5.547 15 C -0.301 4.301 16 H 0.105 0.895 17 C 0.027 3.973 18 N -0.896 5.896 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.103 4.103 24 C -0.085 4.085 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.105 4.105 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.393 0.607 39 H 0.274 0.726 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 6.506 -14.597 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.182 4.182 6 C -0.104 4.104 7 C -0.224 4.224 8 C 0.093 3.907 9 O -0.180 6.180 10 C 0.058 3.942 11 H 0.107 0.893 12 C 0.232 3.768 13 O -0.454 6.454 14 N -0.183 5.183 15 C -0.430 4.430 16 H 0.123 0.877 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.759 3.241 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.104 4.104 24 C -0.103 4.103 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.123 4.123 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.227 0.773 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.672 5.603 -14.479 16.213 hybrid contribution 0.335 0.465 1.004 1.156 sum -4.337 6.068 -13.475 15.402 Atomic orbital electron populations 1.21683 0.94992 1.01429 1.01775 1.20377 0.96100 0.92084 1.02943 1.19268 1.04552 0.97157 0.90383 1.20815 0.98116 0.94801 0.96540 1.20949 1.04068 0.95304 0.97864 1.20875 0.98217 0.99382 0.91937 1.21339 1.06426 0.95028 0.99616 1.18994 0.94352 0.91111 0.86240 1.86242 1.77681 1.43171 1.10920 1.21070 0.95968 0.92286 0.84851 0.89307 1.19059 0.85848 0.88400 0.83529 1.90561 1.55611 1.16370 1.82836 1.41659 1.58917 1.10691 1.07037 1.19677 1.43732 0.92279 0.87355 0.87707 1.25279 0.96800 0.96673 0.98819 1.69601 1.46151 1.13013 1.24869 0.85886 0.79086 0.79649 0.79465 1.19740 1.20850 1.19757 1.20047 0.94874 0.94245 1.01205 1.20971 0.91768 0.99724 0.97879 1.21096 0.98816 0.94140 1.00042 1.21122 0.96693 0.96288 0.99581 1.21026 0.92646 0.99653 1.00300 1.20980 0.99621 0.92872 0.98822 0.92262 0.93276 0.92654 0.91638 0.89960 0.85822 0.86353 0.86177 0.85365 0.77300 0.91622 0.85644 0.86205 0.86339 0.85996 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 37.16 0.37 -1.43 16 2 C -0.08 -1.06 5.79 -27.88 -0.16 -1.23 16 3 C -0.11 -1.64 5.15 -104.47 -0.54 -2.18 16 4 C -0.08 -1.03 9.68 -39.61 -0.38 -1.42 16 5 C -0.16 -1.89 10.04 -39.56 -0.40 -2.29 16 6 C -0.09 -1.06 10.04 -39.60 -0.40 -1.46 16 7 C -0.21 -3.00 8.70 -39.43 -0.34 -3.35 16 8 C 0.14 2.28 6.56 -39.22 -0.26 2.03 16 9 O -0.27 -5.13 7.79 -39.28 -0.31 -5.43 16 10 C 0.12 2.28 2.25 -29.03 -0.07 2.22 16 11 H 0.09 1.55 6.19 -51.93 -0.32 1.23 16 12 C 0.45 10.91 7.11 -10.98 -0.08 10.83 16 13 O -0.57 -15.97 16.08 -14.32 -0.23 -16.20 16 14 N -0.55 -13.90 5.24 -10.96 -0.06 -13.95 16 15 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 16 H 0.11 3.03 7.16 -52.48 -0.38 2.66 16 17 C 0.03 0.71 5.50 -17.47 -0.10 0.61 16 18 N -0.90 -23.88 13.05 55.50 0.72 -23.15 16 19 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.10 -1.79 4.10 -104.62 -0.43 -2.22 16 24 C -0.09 -1.46 9.35 -39.58 -0.37 -1.83 16 25 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 26 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 27 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 28 C -0.10 -1.62 9.17 -39.58 -0.36 -1.99 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.74 8.05 -51.93 -0.42 0.33 16 33 H 0.08 1.33 7.69 -51.93 -0.40 0.93 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.81 5.27 -52.49 -0.28 1.53 16 38 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.13 2.23 7.77 -52.48 -0.41 1.82 16 41 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.12 1.71 8.04 -52.48 -0.42 1.29 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -31.44 375.36 -9.97 -41.41 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -5.88 Total: 14.31 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -4.85 Total: -18.40 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.67 Total: -37.10 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.54 Total: -21.63 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.44 -9.97 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107239991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.204 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds