Wall clock time and date at job start Tue Mar 31 2020 14:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50710 * 109.47231 * 2 1 4 4 C 1.38162 * 120.02759 * 265.32633 * 3 2 1 5 5 C 1.38245 * 120.05311 * 180.29440 * 4 3 2 6 6 C 1.38289 * 120.11209 * 359.67666 * 5 4 3 7 7 C 1.38130 * 120.05592 * 0.02562 * 6 5 4 8 8 C 1.38717 * 120.02439 * 85.00121 * 3 2 1 9 9 O 1.35898 * 120.05474 * 359.97438 * 8 3 2 10 10 C 1.42898 * 116.99602 * 174.28206 * 9 8 3 11 11 H 1.09006 * 109.47447 * 324.66603 * 10 9 8 12 12 C 1.50701 * 109.47383 * 204.66505 * 10 9 8 13 13 O 1.21297 * 119.99699 * 355.00115 * 12 10 9 14 14 N 1.34778 * 120.00321 * 175.00514 * 12 10 9 15 15 C 1.37098 * 120.00164 * 180.02562 * 14 12 10 16 16 H 1.08005 * 119.99615 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00335 * 179.97438 * 15 14 12 18 18 N 1.31408 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00450 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46986 * 59.99902 * 19 17 15 21 21 H 1.48491 * 109.47314 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47058 * 300.00208 * 19 17 15 23 23 C 1.50703 * 109.47188 * 84.66550 * 10 9 8 24 24 C 1.38235 * 119.99734 * 39.71995 * 23 10 9 25 25 C 1.38233 * 120.00070 * 179.80691 * 24 23 10 26 26 C 1.38243 * 119.99890 * 0.40733 * 25 24 23 27 27 C 1.38231 * 119.99736 * 359.85128 * 26 25 24 28 28 C 1.38230 * 120.00262 * 220.00110 * 23 10 9 29 29 H 1.09004 * 109.47142 * 299.99719 * 1 2 3 30 30 H 1.09000 * 109.47582 * 59.99823 * 1 2 3 31 31 H 1.09003 * 109.47250 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47142 * 240.00281 * 2 1 3 33 33 H 1.09000 * 109.47582 * 120.00177 * 2 1 3 34 34 H 1.07996 * 119.97734 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.94667 * 179.69658 * 5 4 3 36 36 H 1.07994 * 119.97731 * 180.02562 * 6 5 4 37 37 H 1.08000 * 120.02888 * 180.02562 * 7 6 5 38 38 H 0.96995 * 119.99909 * 359.97438 * 14 12 10 39 39 H 0.96997 * 120.00190 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.00287 * 0.02562 * 24 23 10 41 41 H 1.07996 * 120.00189 * 180.23278 * 25 24 23 42 42 H 1.08000 * 119.99769 * 179.82952 * 26 25 24 43 43 H 1.08001 * 119.99749 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.00212 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3547 2.0402 -1.1922 5 6 2.8214 3.3415 -1.1923 6 6 2.9604 4.0288 -0.0004 7 6 2.6336 3.4162 1.1937 8 6 2.1651 2.1102 1.1965 9 8 1.8418 1.5055 2.3698 10 6 2.1211 2.2282 3.5705 11 1 3.0400 2.8008 3.4446 12 6 2.2854 1.2596 4.7132 13 8 2.0854 0.0760 4.5385 14 7 2.6547 1.7083 5.9293 15 6 2.8047 0.8270 6.9687 16 1 2.6266 -0.2268 6.8131 17 6 3.1858 1.2896 8.2223 18 7 3.4030 2.5717 8.4114 19 14 3.3895 0.0889 9.6387 20 1 4.4312 -0.9116 9.2935 21 1 3.7994 0.8284 10.8594 22 1 2.1006 -0.6047 9.8889 23 6 0.9808 3.1674 3.8682 24 6 -0.3233 2.7599 3.6578 25 6 -1.3694 3.6199 3.9346 26 6 -1.1112 4.8906 4.4140 27 6 0.1930 5.3000 4.6193 28 6 1.2390 4.4385 4.3462 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2470 1.5057 -2.1244 35 1 3.0775 3.8224 -2.1249 36 1 3.3248 5.0455 -0.0031 37 1 2.7420 3.9535 2.1242 38 1 2.8150 2.6547 6.0689 39 1 3.6687 2.8947 9.2866 40 1 -0.5249 1.7682 3.2804 41 1 -2.3884 3.3002 3.7737 42 1 -1.9285 5.5635 4.6276 43 1 0.3947 6.2929 4.9934 44 1 2.2580 4.7584 4.5067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107239991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:26 Heat of formation + Delta-G solvation = -45.213042 kcal Electronic energy + Delta-G solvation = -27611.337285 eV Core-core repulsion = 23878.853797 eV Total energy + Delta-G solvation = -3732.483488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86441 -40.30810 -39.55823 -38.19651 -36.06770 -35.08418 -33.72055 -32.77564 -31.86478 -31.05277 -30.06257 -28.62716 -26.59685 -24.82270 -23.64625 -23.46671 -22.91275 -21.88244 -21.05555 -20.08012 -19.06300 -18.15148 -17.87615 -17.06351 -16.79541 -16.64978 -16.46365 -15.83943 -15.70440 -15.44209 -15.28521 -15.11755 -14.91766 -14.63513 -14.39749 -14.26785 -14.00782 -13.60584 -13.57420 -13.35990 -13.19499 -12.96207 -12.77207 -12.55277 -12.49788 -12.40092 -12.14771 -11.99965 -11.88725 -11.73984 -11.59947 -11.54803 -10.63142 -10.13032 -9.86387 -9.78691 -9.65977 -9.07019 -8.53829 -6.04086 0.28883 0.41008 0.45873 0.51864 1.34929 1.39118 1.49690 1.83009 1.89442 2.32210 2.75454 2.83884 3.10346 3.31039 3.47653 3.77934 3.82972 3.91787 4.03959 4.11055 4.13820 4.21502 4.25280 4.31601 4.39636 4.51424 4.56738 4.57255 4.65595 4.67199 4.80023 4.96186 4.98202 5.09092 5.10151 5.21089 5.33884 5.36711 5.47654 5.48855 5.52751 5.55493 5.59632 5.63208 5.83373 5.94582 6.04949 6.39008 6.51937 7.00818 7.37642 7.92111 8.62811 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.004154 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.461072 B = 6738.623991 C = 7621.541131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.130 4.130 4 C -0.082 4.082 5 C -0.154 4.154 6 C -0.088 4.088 7 C -0.217 4.217 8 C 0.103 3.897 9 O -0.295 6.295 10 C 0.135 3.865 11 H 0.101 0.899 12 C 0.442 3.558 13 O -0.618 6.618 14 N -0.549 5.549 15 C -0.341 4.341 16 H 0.080 0.920 17 C -0.004 4.004 18 N -0.910 5.910 19 Si 0.995 3.005 20 H -0.270 1.270 21 H -0.265 1.265 22 H -0.272 1.272 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.126 4.126 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.115 4.115 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.126 0.874 38 H 0.398 0.602 39 H 0.282 0.718 40 H 0.101 0.899 41 H 0.142 0.858 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 9.000 -15.732 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 C -0.131 4.131 4 C -0.100 4.100 5 C -0.172 4.172 6 C -0.105 4.105 7 C -0.236 4.236 8 C 0.058 3.942 9 O -0.207 6.207 10 C 0.075 3.925 11 H 0.118 0.882 12 C 0.228 3.772 13 O -0.504 6.504 14 N -0.186 5.186 15 C -0.470 4.470 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.550 5.550 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.189 1.189 22 H -0.197 1.197 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.144 4.144 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.133 4.133 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.144 0.856 38 H 0.232 0.768 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.160 0.840 42 H 0.174 0.826 43 H 0.172 0.828 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.944 8.138 -15.625 18.298 hybrid contribution 0.409 -0.253 1.246 1.335 sum -4.535 7.885 -14.379 17.015 Atomic orbital electron populations 1.21635 0.94419 1.01925 1.01330 1.20357 0.96643 0.92039 1.02320 1.19549 1.05204 0.97482 0.90815 1.21193 0.96894 0.95347 0.96550 1.21411 1.01998 0.94850 0.98941 1.21253 0.97353 1.00630 0.91311 1.21458 1.06898 0.94465 1.00756 1.19372 0.96729 0.92440 0.85683 1.86185 1.78620 1.44257 1.11688 1.20697 0.97633 0.90817 0.83403 0.88168 1.19984 0.84010 0.88759 0.84460 1.90508 1.57223 1.18811 1.83902 1.41656 1.59089 1.10581 1.07226 1.19657 1.46428 0.91829 0.89071 0.90201 1.26061 0.95527 0.98496 1.00396 1.69652 1.45447 1.14031 1.25831 0.84975 0.78914 0.77684 0.76701 1.19554 1.18931 1.19711 1.19936 0.94117 0.94900 1.02963 1.20974 0.92812 0.99567 0.99534 1.21393 0.99128 0.94408 0.99435 1.21569 0.97732 0.95988 0.97735 1.21452 0.92313 1.00592 0.99082 1.21206 1.01020 0.92373 0.98712 0.95045 0.91212 0.91712 0.88904 0.93765 0.82743 0.82754 0.83399 0.85617 0.76761 0.90872 0.88031 0.83972 0.82648 0.82826 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.89 71.98 0.71 -2.85 16 2 C -0.08 -2.17 5.79 29.85 0.17 -2.00 16 3 C -0.13 -3.82 5.15 -19.76 -0.10 -3.92 16 4 C -0.08 -1.81 9.68 22.25 0.22 -1.59 16 5 C -0.15 -3.05 10.04 22.28 0.22 -2.82 16 6 C -0.09 -1.98 10.04 22.26 0.22 -1.75 16 7 C -0.22 -6.37 8.70 22.37 0.19 -6.18 16 8 C 0.10 3.53 6.56 22.51 0.15 3.67 16 9 O -0.29 -12.26 7.79 -73.41 -0.57 -12.83 16 10 C 0.13 5.56 2.25 29.10 0.07 5.63 16 11 H 0.10 3.75 6.19 -2.38 -0.01 3.73 16 12 C 0.44 23.16 7.11 87.66 0.62 23.78 16 13 O -0.62 -37.58 16.08 15.91 0.26 -37.33 16 14 N -0.55 -29.46 5.24 -306.97 -1.61 -31.07 16 15 C -0.34 -19.78 9.68 84.04 0.81 -18.97 16 16 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 17 C 0.00 -0.19 5.50 84.93 0.47 0.28 16 18 N -0.91 -48.49 13.05 21.66 0.28 -48.21 16 19 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C -0.12 -4.31 4.10 -19.87 -0.08 -4.39 16 24 C -0.11 -3.99 9.35 22.27 0.21 -3.78 16 25 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 26 C -0.11 -2.74 10.05 22.27 0.22 -2.52 16 27 C -0.12 -2.98 10.05 22.27 0.22 -2.75 16 28 C -0.12 -3.53 9.17 22.27 0.20 -3.33 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 2.05 8.05 -2.39 -0.02 2.03 16 33 H 0.04 1.57 7.69 -2.39 -0.02 1.55 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.13 3.62 5.27 -2.91 -0.02 3.61 16 38 H 0.40 20.11 7.90 -92.71 -0.73 19.38 16 39 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.10 4.03 7.77 -2.91 -0.02 4.01 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 42 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 43 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.13 3.69 8.04 -2.91 -0.02 3.67 16 Total: -1.00 -72.99 375.36 5.43 -67.56 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: 0.28 Total: 43.90 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 4.76 Total: -26.87 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -1.33 Total: -79.28 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.32 Total: -50.16 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.99 5.43 -67.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107239991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.347 kcal (2) G-P(sol) polarization free energy of solvation -72.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds