Wall clock time and date at job start Tue Mar 31 2020 14:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47298 * 2 1 4 4 C 1.38167 * 120.02936 * 265.02076 * 3 2 1 5 5 C 1.38247 * 120.05447 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.11127 * 0.02609 * 5 4 3 7 7 C 1.38123 * 120.05492 * 359.67755 * 6 5 4 8 8 C 1.38708 * 120.02632 * 84.99980 * 3 2 1 9 9 O 1.35905 * 120.05637 * 0.02804 * 8 3 2 10 10 C 1.42894 * 117.00041 * 185.67323 * 9 8 3 11 11 H 1.09001 * 109.47442 * 35.58838 * 10 9 8 12 12 C 1.50706 * 109.47346 * 155.58684 * 10 9 8 13 13 O 1.21294 * 119.99714 * 4.99670 * 12 10 9 14 14 N 1.34776 * 120.00268 * 185.00255 * 12 10 9 15 15 C 1.37097 * 120.00068 * 180.02562 * 14 12 10 16 16 H 1.08008 * 120.00011 * 359.97438 * 15 14 12 17 17 C 1.38942 * 120.00133 * 179.97438 * 15 14 12 18 18 N 1.31416 * 119.99909 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00151 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46947 * 89.99937 * 19 17 15 21 21 H 1.48497 * 109.47147 * 210.00098 * 19 17 15 22 22 H 1.48502 * 109.46931 * 330.00021 * 19 17 15 23 23 C 1.50698 * 109.47154 * 275.58675 * 10 9 8 24 24 C 1.38234 * 120.00325 * 145.00222 * 23 10 9 25 25 C 1.38229 * 120.00651 * 179.97438 * 24 23 10 26 26 C 1.38244 * 119.99632 * 359.97438 * 25 24 23 27 27 C 1.38233 * 119.99687 * 0.07451 * 26 25 24 28 28 C 1.38231 * 120.00426 * 359.88225 * 27 26 25 29 29 H 1.09002 * 109.47501 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47052 * 300.00090 * 1 2 3 31 31 H 1.09006 * 109.47169 * 59.99812 * 1 2 3 32 32 H 1.09003 * 109.47170 * 240.00269 * 2 1 3 33 33 H 1.08992 * 109.47182 * 120.00366 * 2 1 3 34 34 H 1.07998 * 119.97080 * 0.02562 * 4 3 2 35 35 H 1.07994 * 119.94026 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.97253 * 179.97438 * 6 5 4 37 37 H 1.08007 * 120.02813 * 180.32921 * 7 6 5 38 38 H 0.96997 * 119.99456 * 359.97438 * 14 12 10 39 39 H 0.97001 * 119.99645 * 179.97438 * 18 17 15 40 40 H 1.08006 * 119.99587 * 359.97438 * 24 23 10 41 41 H 1.07999 * 120.00345 * 179.72248 * 25 24 23 42 42 H 1.07992 * 119.99801 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.99714 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.00435 * 180.11547 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0381 -1.1917 5 6 2.8212 3.3417 -1.1923 6 6 2.9547 4.0308 -0.0009 7 6 2.6220 3.4202 1.1925 8 6 2.1651 2.1101 1.1964 9 8 1.8428 1.5051 2.3699 10 6 1.8847 2.3118 3.5486 11 1 1.5564 3.3231 3.3086 12 6 0.9725 1.7224 4.5934 13 8 0.4182 0.6634 4.3869 14 7 0.7724 2.3719 5.7573 15 6 -0.0570 1.8355 6.7079 16 1 -0.5505 0.8924 6.5241 17 6 -0.2628 2.5048 7.9080 18 7 0.3379 3.6520 8.1319 19 14 -1.3935 1.7742 9.2031 20 1 -0.6070 0.9014 10.1113 21 1 -2.0199 2.8684 9.9875 22 1 -2.4525 0.9718 8.5397 23 6 3.2947 2.3538 4.0788 24 6 3.7754 3.5052 4.6739 25 6 5.0685 3.5436 5.1607 26 6 5.8810 2.4303 5.0529 27 6 5.4006 1.2793 4.4569 28 6 4.1071 1.2406 3.9709 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2569 1.5021 -2.1235 35 1 3.0769 3.8225 -2.1249 36 1 3.3150 5.0490 -0.0040 37 1 2.7214 3.9607 2.1223 38 1 1.2159 3.2186 5.9225 39 1 0.1939 4.1194 8.9696 40 1 3.1405 4.3748 4.7584 41 1 5.4455 4.4447 5.6216 42 1 6.8914 2.4605 5.4329 43 1 6.0355 0.4097 4.3723 44 1 3.7312 0.3407 3.5069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107239993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:28 Heat of formation + Delta-G solvation = -45.031991 kcal Electronic energy + Delta-G solvation = -27584.880117 eV Core-core repulsion = 23852.404480 eV Total energy + Delta-G solvation = -3732.475637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86936 -40.31105 -39.55660 -38.19913 -36.06731 -35.08451 -33.72358 -32.76657 -31.85642 -31.05202 -30.08159 -28.62376 -26.60216 -24.83031 -23.65323 -23.42817 -22.92348 -21.88684 -21.06360 -20.07709 -19.05612 -18.19818 -17.87767 -17.04701 -16.79915 -16.60893 -16.46080 -15.81978 -15.69962 -15.49958 -15.24925 -15.16525 -14.90729 -14.62877 -14.40735 -14.28709 -13.90274 -13.60889 -13.59126 -13.54888 -13.05414 -12.92707 -12.84827 -12.53543 -12.49776 -12.38645 -12.14655 -12.02081 -11.86527 -11.75218 -11.60045 -11.55211 -10.64575 -10.12699 -9.86547 -9.79108 -9.64653 -9.06995 -8.54011 -6.04075 0.28587 0.41253 0.45659 0.51702 1.33202 1.39171 1.51520 1.82858 1.88958 2.32061 2.75357 2.83833 3.10284 3.29876 3.47732 3.78439 3.83171 3.91891 4.04430 4.10704 4.13390 4.20919 4.25924 4.31636 4.39526 4.51336 4.56669 4.57078 4.65586 4.66730 4.79803 4.96235 4.97079 5.09247 5.09606 5.21413 5.34159 5.36420 5.47725 5.49100 5.52876 5.55300 5.59368 5.63126 5.83505 5.94574 6.04806 6.38935 6.51798 7.00997 7.37679 7.92162 8.62872 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.004325 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.557824 B = 6471.792012 C = 7782.129336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 C -0.130 4.130 4 C -0.082 4.082 5 C -0.154 4.154 6 C -0.088 4.088 7 C -0.217 4.217 8 C 0.103 3.897 9 O -0.295 6.295 10 C 0.135 3.865 11 H 0.100 0.900 12 C 0.442 3.558 13 O -0.616 6.616 14 N -0.550 5.550 15 C -0.340 4.340 16 H 0.080 0.920 17 C -0.004 4.004 18 N -0.910 5.910 19 Si 0.994 3.006 20 H -0.270 1.270 21 H -0.266 1.266 22 H -0.273 1.273 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.125 4.125 28 C -0.111 4.111 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.125 0.875 38 H 0.398 0.602 39 H 0.281 0.719 40 H 0.132 0.868 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.072 3.274 -14.354 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.130 4.130 4 C -0.099 4.099 5 C -0.172 4.172 6 C -0.106 4.106 7 C -0.236 4.236 8 C 0.058 3.942 9 O -0.207 6.207 10 C 0.075 3.925 11 H 0.118 0.882 12 C 0.228 3.772 13 O -0.503 6.503 14 N -0.186 5.186 15 C -0.469 4.469 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.550 5.550 19 Si 0.817 3.183 20 H -0.195 1.195 21 H -0.190 1.190 22 H -0.198 1.198 23 C -0.120 4.120 24 C -0.134 4.134 25 C -0.134 4.134 26 C -0.131 4.131 27 C -0.143 4.143 28 C -0.130 4.130 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.143 0.857 38 H 0.232 0.768 39 H 0.091 0.909 40 H 0.150 0.850 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.162 0.838 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.627 2.512 -14.279 17.975 hybrid contribution -0.632 0.163 1.181 1.349 sum 9.995 2.675 -13.098 16.691 Atomic orbital electron populations 1.21642 0.95105 1.01857 1.00972 1.20329 0.96004 0.92066 1.02533 1.19548 1.04963 0.97859 0.90679 1.21203 0.96807 0.95343 0.96575 1.21409 1.02083 0.94799 0.98904 1.21248 0.97338 1.00642 0.91331 1.21445 1.06826 0.94594 1.00712 1.19365 0.96571 0.92644 0.85583 1.86174 1.83694 1.37877 1.12999 1.20682 0.92827 0.94932 0.84052 0.88222 1.19977 0.85981 0.86883 0.84348 1.90509 1.54451 1.25210 1.80111 1.41665 1.41604 1.22027 1.13337 1.19687 1.24149 1.06838 0.96189 0.90220 1.26059 0.99026 0.95925 0.99493 1.69662 1.43096 1.15213 1.27012 0.84917 0.77924 0.78092 0.77349 1.19491 1.18995 1.19770 1.19953 0.93733 0.96052 1.02213 1.21177 0.97214 0.96952 0.98064 1.21445 0.93082 1.00016 0.98902 1.21568 1.01124 0.92443 0.97917 1.21397 0.94785 0.99663 0.98421 1.20983 0.95063 0.97312 0.99618 0.91731 0.95819 0.91285 0.88565 0.93356 0.82670 0.82753 0.83462 0.85736 0.76756 0.90889 0.85033 0.82948 0.82633 0.83841 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.89 71.98 0.71 -3.27 16 2 C -0.07 -2.03 5.79 29.85 0.17 -1.85 16 3 C -0.13 -3.79 5.15 -19.77 -0.10 -3.89 16 4 C -0.08 -1.78 9.68 22.25 0.22 -1.57 16 5 C -0.15 -3.04 10.04 22.28 0.22 -2.81 16 6 C -0.09 -1.99 10.04 22.25 0.22 -1.76 16 7 C -0.22 -6.39 8.70 22.37 0.19 -6.20 16 8 C 0.10 3.53 6.56 22.51 0.15 3.68 16 9 O -0.29 -12.22 7.63 -73.49 -0.56 -12.78 16 10 C 0.14 5.59 2.25 29.10 0.07 5.66 16 11 H 0.10 3.75 6.25 -2.39 -0.01 3.73 16 12 C 0.44 23.16 7.12 87.66 0.62 23.78 16 13 O -0.62 -37.43 16.08 15.92 0.26 -37.17 16 14 N -0.55 -29.47 5.24 -306.98 -1.61 -31.08 16 15 C -0.34 -19.70 9.68 84.04 0.81 -18.89 16 16 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 17 C 0.00 -0.21 5.50 84.92 0.47 0.26 16 18 N -0.91 -48.43 13.05 21.66 0.28 -48.15 16 19 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 C -0.12 -4.33 4.03 -19.87 -0.08 -4.41 16 24 C -0.12 -3.63 9.26 22.27 0.21 -3.42 16 25 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 26 C -0.11 -2.76 10.05 22.27 0.22 -2.53 16 27 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 28 C -0.11 -3.98 9.35 22.27 0.21 -3.77 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 32 H 0.10 2.03 8.05 -2.39 -0.02 2.01 16 33 H 0.05 1.62 7.69 -2.39 -0.02 1.60 16 34 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.12 3.63 5.47 -2.91 -0.02 3.61 16 38 H 0.40 20.06 7.73 -92.71 -0.72 19.35 16 39 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 40 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 41 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 43 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 44 H 0.10 4.05 7.63 -2.91 -0.02 4.03 16 Total: -1.00 -72.85 375.18 5.46 -67.39 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: 0.30 Total: 44.05 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 4.76 Total: -27.12 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -1.33 Total: -79.23 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.30 Total: -49.95 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.85 5.46 -67.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107239993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.359 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds