Wall clock time and date at job start Tue Mar 31 2020 14:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46895 * 2 1 4 4 C 1.52999 * 109.47227 * 59.99952 * 3 2 1 5 5 C 1.52998 * 109.47247 * 299.99960 * 3 2 1 6 6 C 1.50706 * 109.47309 * 179.97438 * 3 2 1 7 7 C 1.38229 * 120.00305 * 180.02562 * 6 3 2 8 8 C 1.38235 * 120.00310 * 180.02562 * 7 6 3 9 9 C 1.38234 * 119.99829 * 0.02562 * 8 7 6 10 10 S 1.76199 * 120.00019 * 179.97438 * 9 8 7 11 11 O 1.42100 * 106.40198 * 203.53954 * 10 9 8 12 12 O 1.42096 * 106.39959 * 336.46020 * 10 9 8 13 13 N 1.65599 * 107.21658 * 90.00010 * 10 9 8 14 14 C 1.46499 * 120.00337 * 89.99803 * 13 10 9 15 15 C 1.46502 * 119.99727 * 269.99791 * 13 10 9 16 16 C 1.50696 * 109.47005 * 95.00367 * 15 13 10 17 17 H 1.07999 * 120.00504 * 359.97438 * 16 15 13 18 18 C 1.37885 * 120.00164 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00057 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99637 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47121 * 90.00488 * 20 18 16 22 22 H 1.48507 * 109.47241 * 210.00252 * 20 18 16 23 23 H 1.48503 * 109.47373 * 330.00154 * 20 18 16 24 24 C 1.38238 * 119.99674 * 0.25365 * 9 8 7 25 25 C 1.38228 * 120.00121 * 359.49261 * 24 9 8 26 26 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47600 * 299.99828 * 1 2 3 28 28 H 1.09007 * 109.47443 * 60.00352 * 1 2 3 29 29 H 1.08997 * 109.47600 * 240.00172 * 2 1 3 30 30 H 1.08995 * 109.47104 * 119.99917 * 2 1 3 31 31 H 1.09004 * 109.47467 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.46887 * 299.99976 * 4 3 2 33 33 H 1.09004 * 109.47408 * 59.99873 * 4 3 2 34 34 H 1.08997 * 109.46994 * 299.99672 * 5 3 2 35 35 H 1.09001 * 109.47203 * 59.99817 * 5 3 2 36 36 H 1.09004 * 109.47107 * 179.97438 * 5 3 2 37 37 H 1.08005 * 119.99920 * 359.97438 * 7 6 3 38 38 H 1.07999 * 120.00165 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.46766 * 89.99921 * 14 13 10 40 40 H 1.09001 * 109.47517 * 209.99796 * 14 13 10 41 41 H 1.08997 * 109.47269 * 330.00330 * 14 13 10 42 42 H 1.09001 * 109.47107 * 215.00120 * 15 13 10 43 43 H 1.08998 * 109.47122 * 335.00235 * 15 13 10 44 44 H 0.96996 * 119.99811 * 180.02562 * 19 18 16 45 45 H 1.08004 * 119.99572 * 179.72682 * 24 9 8 46 46 H 1.08004 * 120.00393 * 180.23620 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5299 2.1637 -1.2492 6 6 3.5470 1.4426 0.0006 7 6 4.2381 2.6397 0.0013 8 6 5.6204 2.6398 0.0013 9 6 6.3116 1.4427 0.0002 10 16 8.0736 1.4428 -0.0004 11 8 8.4747 0.1935 -0.5459 12 8 8.4746 2.6929 -0.5441 13 7 8.5643 1.4416 1.5812 14 6 8.7814 0.1724 2.2799 15 6 8.7814 2.7099 2.2817 16 6 7.5358 3.0824 3.0437 17 1 6.6690 2.4390 3.0094 18 6 7.5023 4.2451 3.7840 19 7 6.4154 4.5699 4.4495 20 14 9.0012 5.3583 3.8429 21 1 8.9241 6.3511 2.7412 22 1 9.0399 6.0679 5.1469 23 1 10.2313 4.5409 3.6875 24 6 5.6204 0.2456 -0.0063 25 6 4.2382 0.2455 -0.0010 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8935 3.1913 1.2495 32 1 0.4399 2.1637 1.2492 33 1 1.8932 1.6500 2.1393 34 1 1.8933 1.6500 -2.1392 35 1 0.4399 2.1637 -1.2493 36 1 1.8928 3.1916 -1.2490 37 1 3.6980 3.5751 0.0009 38 1 6.1604 3.5751 0.0014 39 1 9.8168 -0.1421 2.1486 40 1 8.5729 0.3020 3.3419 41 1 8.1162 -0.5870 1.8690 42 1 9.6142 2.6032 2.9767 43 1 9.0109 3.4907 1.5567 44 1 6.3917 5.3881 4.9699 45 1 6.1605 -0.6897 -0.0116 46 1 3.6981 -0.6898 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107515343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:07 Heat of formation + Delta-G solvation = -59.335469 kcal Electronic energy + Delta-G solvation = -26686.512295 eV Core-core repulsion = 23088.860363 eV Total energy + Delta-G solvation = -3597.651931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85643 -36.85009 -36.72771 -35.65634 -35.29032 -32.45418 -31.47376 -30.72731 -29.23458 -28.41721 -27.32429 -25.20546 -24.88572 -22.79738 -21.90788 -21.78597 -18.99810 -18.44607 -17.60226 -16.86942 -16.73473 -15.85600 -15.65637 -14.96027 -14.84219 -14.50076 -14.21943 -13.89899 -13.62544 -13.59632 -13.29414 -13.25361 -12.97785 -12.65152 -12.41622 -12.28057 -12.11779 -12.03780 -11.87877 -11.83287 -11.56307 -11.37795 -11.26014 -11.25006 -11.21526 -10.88856 -10.77529 -10.74307 -10.50691 -10.33191 -10.22617 -10.15584 -9.60580 -8.82005 -8.66687 -8.64672 -8.09175 -6.16578 -4.17395 0.94974 1.25970 1.67568 3.25455 3.32109 3.35563 3.50981 3.88297 4.33026 4.34763 4.51445 4.58880 4.82749 4.84160 5.11352 5.15863 5.23088 5.24994 5.26444 5.32665 5.45317 5.50115 5.61466 5.63712 5.70965 5.81649 5.83831 5.84656 5.91525 5.98588 5.99894 6.05839 6.07623 6.17428 6.23839 6.26643 6.34296 6.42771 6.49284 6.56389 6.74709 6.81067 7.07176 7.18546 7.33317 7.52026 8.39851 8.88017 9.43703 10.95706 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.004701 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.136992 B = 5955.062007 C = 7282.691492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.030 4.030 4 C -0.142 4.142 5 C -0.140 4.140 6 C -0.022 4.022 7 C -0.135 4.135 8 C 0.010 3.990 9 C -0.668 4.668 10 S 2.693 3.307 11 O -0.977 6.977 12 O -0.962 6.962 13 N -0.982 5.982 14 C 0.103 3.897 15 C 0.212 3.788 16 C -0.543 4.543 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.867 3.133 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.263 1.263 24 C -0.023 4.023 25 C -0.151 4.151 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.141 0.859 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.045 0.955 44 H 0.265 0.735 45 H 0.132 0.868 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 -8.047 -8.027 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.030 4.030 4 C -0.199 4.199 5 C -0.197 4.197 6 C -0.022 4.022 7 C -0.154 4.154 8 C -0.009 4.009 9 C -0.755 4.755 10 S 2.783 3.217 11 O -0.968 6.968 12 O -0.953 6.953 13 N -0.821 5.821 14 C -0.043 4.043 15 C 0.088 3.912 16 C -0.581 4.581 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.530 5.530 20 Si 0.693 3.307 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.043 4.043 25 C -0.170 4.170 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.159 0.841 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.150 0.850 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.253 -7.906 -8.603 14.305 hybrid contribution -0.082 0.731 0.714 1.025 sum -8.335 -7.175 -7.889 13.535 Atomic orbital electron populations 1.21906 0.95779 1.01462 1.02131 1.21677 0.95929 0.95522 1.02252 1.19605 0.90508 0.96238 0.96636 1.21949 1.00684 1.00722 0.96508 1.21941 1.00948 1.00410 0.96433 1.20041 0.94726 0.93398 0.94033 1.21039 0.94163 0.97750 1.02427 1.20896 0.94413 0.96892 0.88709 1.30994 1.27598 0.99323 1.17575 1.01769 0.73971 0.72995 0.72929 1.93509 1.81577 1.44442 1.77255 1.93529 1.81206 1.43637 1.76892 1.57061 1.81366 1.13046 1.30594 1.21307 1.00062 0.83726 0.99185 1.19667 0.98207 0.80016 0.93287 1.21458 0.99388 1.07763 1.29536 0.90126 1.24839 0.95783 0.97260 0.94697 1.69896 1.27383 1.24786 1.30946 0.86984 0.84052 0.81675 0.77942 1.19644 1.21034 1.18725 1.20806 0.94601 0.96293 0.92556 1.21134 0.93986 0.97886 1.03991 0.92945 0.92275 0.92461 0.91642 0.91437 0.92020 0.92070 0.92147 0.92552 0.91947 0.92215 0.85572 0.84144 0.93322 0.90399 0.92406 0.94237 0.93703 0.92530 0.85001 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.21 37.16 0.34 -0.93 16 2 C -0.12 -1.14 3.65 -26.73 -0.10 -1.24 16 3 C -0.03 -0.34 0.63 -155.66 -0.10 -0.44 16 4 C -0.14 -1.66 7.93 37.16 0.29 -1.37 16 5 C -0.14 -1.41 7.93 37.16 0.29 -1.11 16 6 C -0.02 -0.31 4.76 -104.62 -0.50 -0.81 16 7 C -0.14 -2.21 8.71 -39.59 -0.34 -2.56 16 8 C 0.01 0.19 9.52 -39.58 -0.38 -0.19 16 9 C -0.67 -12.45 5.97 -39.58 -0.24 -12.69 16 10 S 2.69 53.60 5.65 -107.50 -0.61 52.99 16 11 O -0.98 -19.52 16.35 -57.17 -0.93 -20.46 16 12 O -0.96 -21.41 15.83 -57.17 -0.91 -22.32 16 13 N -0.98 -19.89 3.17 -123.05 -0.39 -20.28 16 14 C 0.10 1.73 10.31 59.85 0.62 2.35 16 15 C 0.21 4.90 4.48 -5.19 -0.02 4.88 16 16 C -0.54 -14.31 9.94 -34.44 -0.34 -14.66 16 17 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 18 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 20 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 24 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 25 C -0.15 -2.19 8.98 -39.59 -0.36 -2.55 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 28 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 29 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 30 H 0.07 0.68 7.52 -51.93 -0.39 0.29 16 31 H 0.06 0.77 7.39 -51.93 -0.38 0.39 16 32 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 36 H 0.06 0.61 7.39 -51.93 -0.38 0.23 16 37 H 0.13 1.85 7.10 -52.48 -0.37 1.47 16 38 H 0.14 2.73 7.62 -52.49 -0.40 2.33 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 41 H 0.06 0.85 7.79 -51.93 -0.40 0.45 16 42 H 0.04 0.89 7.17 -51.93 -0.37 0.52 16 43 H 0.05 1.07 6.34 -51.93 -0.33 0.74 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.13 1.90 7.61 -52.48 -0.40 1.50 16 46 H 0.13 1.50 5.90 -52.48 -0.31 1.19 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -31.53 372.26 -9.59 -41.12 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.17 Total: 2.61 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -1.30 Total: -30.05 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.38 Total: -45.35 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.84 Total: -42.78 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 53.60 SS G_CDS: -0.61 Total: 52.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.53 -9.59 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107515343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.215 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds