Wall clock time and date at job start Tue Mar 31 2020 14:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46895 * 2 1 4 4 C 1.52999 * 109.47227 * 59.99952 * 3 2 1 5 5 C 1.52998 * 109.47247 * 299.99960 * 3 2 1 6 6 C 1.50706 * 109.47309 * 179.97438 * 3 2 1 7 7 C 1.38229 * 120.00305 * 180.02562 * 6 3 2 8 8 C 1.38235 * 120.00310 * 180.02562 * 7 6 3 9 9 C 1.38234 * 119.99829 * 0.02562 * 8 7 6 10 10 S 1.76199 * 120.00019 * 179.97438 * 9 8 7 11 11 O 1.42100 * 106.40198 * 203.53954 * 10 9 8 12 12 O 1.42096 * 106.39959 * 336.46020 * 10 9 8 13 13 N 1.65599 * 107.21658 * 90.00010 * 10 9 8 14 14 C 1.46499 * 120.00337 * 89.99803 * 13 10 9 15 15 C 1.46502 * 119.99727 * 269.99791 * 13 10 9 16 16 C 1.50696 * 109.47005 * 95.00367 * 15 13 10 17 17 H 1.07999 * 120.00504 * 359.97438 * 16 15 13 18 18 C 1.37885 * 120.00164 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00057 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99637 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47121 * 90.00488 * 20 18 16 22 22 H 1.48507 * 109.47241 * 210.00252 * 20 18 16 23 23 H 1.48503 * 109.47373 * 330.00154 * 20 18 16 24 24 C 1.38238 * 119.99674 * 0.25365 * 9 8 7 25 25 C 1.38228 * 120.00121 * 359.49261 * 24 9 8 26 26 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47600 * 299.99828 * 1 2 3 28 28 H 1.09007 * 109.47443 * 60.00352 * 1 2 3 29 29 H 1.08997 * 109.47600 * 240.00172 * 2 1 3 30 30 H 1.08995 * 109.47104 * 119.99917 * 2 1 3 31 31 H 1.09004 * 109.47467 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.46887 * 299.99976 * 4 3 2 33 33 H 1.09004 * 109.47408 * 59.99873 * 4 3 2 34 34 H 1.08997 * 109.46994 * 299.99672 * 5 3 2 35 35 H 1.09001 * 109.47203 * 59.99817 * 5 3 2 36 36 H 1.09004 * 109.47107 * 179.97438 * 5 3 2 37 37 H 1.08005 * 119.99920 * 359.97438 * 7 6 3 38 38 H 1.07999 * 120.00165 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.46766 * 89.99921 * 14 13 10 40 40 H 1.09001 * 109.47517 * 209.99796 * 14 13 10 41 41 H 1.08997 * 109.47269 * 330.00330 * 14 13 10 42 42 H 1.09001 * 109.47107 * 215.00120 * 15 13 10 43 43 H 1.08998 * 109.47122 * 335.00235 * 15 13 10 44 44 H 0.96996 * 119.99811 * 180.02562 * 19 18 16 45 45 H 1.08004 * 119.99572 * 179.72682 * 24 9 8 46 46 H 1.08004 * 120.00393 * 180.23620 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5299 2.1637 -1.2492 6 6 3.5470 1.4426 0.0006 7 6 4.2381 2.6397 0.0013 8 6 5.6204 2.6398 0.0013 9 6 6.3116 1.4427 0.0002 10 16 8.0736 1.4428 -0.0004 11 8 8.4747 0.1935 -0.5459 12 8 8.4746 2.6929 -0.5441 13 7 8.5643 1.4416 1.5812 14 6 8.7814 0.1724 2.2799 15 6 8.7814 2.7099 2.2817 16 6 7.5358 3.0824 3.0437 17 1 6.6690 2.4390 3.0094 18 6 7.5023 4.2451 3.7840 19 7 6.4154 4.5699 4.4495 20 14 9.0012 5.3583 3.8429 21 1 8.9241 6.3511 2.7412 22 1 9.0399 6.0679 5.1469 23 1 10.2313 4.5409 3.6875 24 6 5.6204 0.2456 -0.0063 25 6 4.2382 0.2455 -0.0010 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8935 3.1913 1.2495 32 1 0.4399 2.1637 1.2492 33 1 1.8932 1.6500 2.1393 34 1 1.8933 1.6500 -2.1392 35 1 0.4399 2.1637 -1.2493 36 1 1.8928 3.1916 -1.2490 37 1 3.6980 3.5751 0.0009 38 1 6.1604 3.5751 0.0014 39 1 9.8168 -0.1421 2.1486 40 1 8.5729 0.3020 3.3419 41 1 8.1162 -0.5870 1.8690 42 1 9.6142 2.6032 2.9767 43 1 9.0109 3.4907 1.5567 44 1 6.3917 5.3881 4.9699 45 1 6.1605 -0.6897 -0.0116 46 1 3.6981 -0.6898 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107515343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:06 Heat of formation + Delta-G solvation = -78.356105 kcal Electronic energy + Delta-G solvation = -26687.337091 eV Core-core repulsion = 23088.860363 eV Total energy + Delta-G solvation = -3598.476728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99194 -38.35730 -37.90755 -37.32282 -36.93074 -34.49168 -32.51850 -31.95914 -30.27431 -30.22121 -28.19847 -26.80618 -25.84479 -24.10115 -23.69158 -22.94946 -20.21718 -19.72060 -19.24136 -18.76324 -18.32236 -17.30734 -16.88776 -16.45251 -16.02389 -15.66900 -15.62197 -15.41022 -14.79131 -14.67769 -14.56271 -14.47014 -14.41452 -14.25942 -14.10984 -13.50856 -13.46506 -13.24228 -13.13809 -13.00012 -12.95038 -12.86672 -12.76308 -12.42161 -12.38697 -12.31999 -12.11345 -11.99527 -11.96411 -11.66922 -11.52479 -11.43147 -11.25500 -10.76522 -10.09865 -9.97150 -9.73173 -8.27649 -6.32122 -0.55980 -0.11321 0.36794 1.37634 1.40790 1.48165 1.99460 2.35370 2.51262 2.81527 3.07135 3.30901 3.52058 3.65515 3.95271 4.01419 4.01817 4.03254 4.27663 4.32494 4.44848 4.50474 4.61523 4.67848 4.70892 4.75485 4.79704 4.83485 4.85509 4.94006 4.98500 4.99976 5.02857 5.09336 5.11699 5.16415 5.18941 5.24226 5.29570 5.32486 5.46269 5.47918 5.49324 5.62199 5.72982 5.91496 6.30968 6.72738 7.31842 8.87552 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.004701 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.136992 B = 5955.062007 C = 7282.691492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.028 4.028 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.017 4.017 7 C -0.146 4.146 8 C -0.020 4.020 9 C -0.684 4.684 10 S 2.702 3.298 11 O -0.978 6.978 12 O -0.993 6.993 13 N -0.989 5.989 14 C 0.092 3.908 15 C 0.217 3.783 16 C -0.535 4.535 17 H 0.048 0.952 18 C 0.024 3.976 19 N -0.936 5.936 20 Si 0.922 3.078 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.240 1.240 24 C -0.031 4.031 25 C -0.148 4.148 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.039 0.961 44 H 0.266 0.734 45 H 0.152 0.848 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 -9.622 -8.572 15.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.028 4.028 4 C -0.198 4.198 5 C -0.196 4.196 6 C -0.018 4.018 7 C -0.165 4.165 8 C -0.039 4.039 9 C -0.773 4.773 10 S 2.794 3.206 11 O -0.969 6.969 12 O -0.983 6.983 13 N -0.827 5.827 14 C -0.053 4.053 15 C 0.092 3.908 16 C -0.574 4.574 17 H 0.066 0.934 18 C -0.175 4.175 19 N -0.576 5.576 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.164 1.164 24 C -0.050 4.050 25 C -0.166 4.166 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.153 0.847 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.170 0.830 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.891 -9.511 -9.156 15.916 hybrid contribution -0.009 1.137 0.861 1.426 sum -8.900 -8.374 -8.295 14.769 Atomic orbital electron populations 1.21889 0.94302 1.02342 1.02495 1.21686 0.97236 0.93905 1.02503 1.19690 0.88122 0.97906 0.97084 1.21954 1.02213 0.99644 0.96014 1.21944 1.02265 0.99771 0.95612 1.20488 0.96754 0.92652 0.91883 1.21235 0.93393 0.99313 1.02535 1.20886 0.95652 0.96415 0.90962 1.30751 1.26579 1.00267 1.19700 1.01313 0.74331 0.72305 0.72609 1.93494 1.82067 1.44073 1.77235 1.93480 1.82200 1.45060 1.77599 1.57033 1.81842 1.13229 1.30605 1.21602 1.02134 0.82668 0.98904 1.19454 0.96892 0.81335 0.93100 1.21590 0.99594 1.07060 1.29202 0.93377 1.25613 0.98518 0.98832 0.94516 1.70023 1.29590 1.25616 1.32371 0.86091 0.81454 0.79978 0.77927 1.19643 1.20568 1.16368 1.21157 0.95673 0.96103 0.92044 1.21573 0.93463 0.99304 1.02244 0.91894 0.92355 0.91633 0.90769 0.91775 0.93455 0.89654 0.93753 0.92265 0.89842 0.92953 0.84701 0.86247 0.90959 0.90664 0.90444 0.92838 0.94344 0.92467 0.82990 0.81897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.21 71.98 0.66 -1.34 16 2 C -0.12 -1.92 3.65 30.59 0.11 -1.81 16 3 C -0.03 -0.59 0.63 -52.93 -0.03 -0.62 16 4 C -0.14 -3.17 7.93 71.98 0.57 -2.60 16 5 C -0.14 -2.50 7.93 71.98 0.57 -1.93 16 6 C -0.02 -0.49 4.76 -19.87 -0.09 -0.59 16 7 C -0.15 -4.92 8.71 22.27 0.19 -4.72 16 8 C -0.02 -0.77 9.52 22.27 0.21 -0.56 16 9 C -0.68 -25.90 5.97 22.27 0.13 -25.76 16 10 S 2.70 108.20 5.65 -56.49 -0.32 107.89 16 11 O -0.98 -38.20 16.35 -128.00 -2.09 -40.29 16 12 O -0.99 -45.38 15.83 -128.00 -2.03 -47.40 16 13 N -0.99 -39.79 3.17 -543.23 -1.72 -41.51 16 14 C 0.09 2.94 10.31 127.77 1.32 4.26 16 15 C 0.22 10.02 4.48 85.63 0.38 10.41 16 16 C -0.54 -28.86 9.94 25.60 0.25 -28.61 16 17 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 18 C 0.02 1.36 5.47 84.66 0.46 1.82 16 19 N -0.94 -55.67 13.96 21.45 0.30 -55.37 16 20 Si 0.92 42.17 27.47 68.60 1.88 44.05 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 24 C -0.03 -0.96 9.52 22.27 0.21 -0.75 16 25 C -0.15 -4.02 8.98 22.27 0.20 -3.82 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.06 0.78 6.43 -2.39 -0.02 0.76 16 28 H 0.06 0.76 6.43 -2.38 -0.02 0.74 16 29 H 0.07 1.12 7.51 -2.39 -0.02 1.10 16 30 H 0.06 1.12 7.52 -2.39 -0.02 1.10 16 31 H 0.05 1.18 7.39 -2.38 -0.02 1.16 16 32 H 0.08 1.48 6.43 -2.39 -0.02 1.47 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.16 6.43 -2.39 -0.02 1.14 16 36 H 0.05 1.02 7.39 -2.38 -0.02 1.00 16 37 H 0.14 4.13 7.10 -2.91 -0.02 4.11 16 38 H 0.12 5.05 7.62 -2.91 -0.02 5.03 16 39 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 41 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 42 H 0.05 2.33 7.17 -2.39 -0.02 2.31 16 43 H 0.04 1.84 6.34 -2.39 -0.02 1.82 16 44 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.15 4.08 7.61 -2.91 -0.02 4.05 16 46 H 0.16 3.26 5.90 -2.91 -0.02 3.24 16 Total: -1.00 -68.90 372.26 2.09 -66.81 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.91 Total: 22.44 kcal Atomic # 6 Polarization: -61.78 SS G_CDS: 5.16 Total: -56.62 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -1.42 Total: -96.88 kcal Atomic # 8 Polarization: -83.57 SS G_CDS: -4.12 Total: -87.69 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Atomic # 16 Polarization: 108.20 SS G_CDS: -0.32 Total: 107.89 kcal Total: -68.90 2.09 -66.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107515343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.545 kcal (2) G-P(sol) polarization free energy of solvation -68.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds