Wall clock time and date at job start Tue Mar 31 2020 15:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47328 * 2 1 4 4 C 1.53006 * 109.47199 * 120.00013 * 2 1 3 5 5 H 1.08994 * 109.47152 * 180.02562 * 4 2 1 6 6 N 1.46501 * 109.47195 * 60.06360 * 4 2 1 7 7 S 1.65595 * 120.00023 * 95.89068 * 6 4 2 8 8 O 1.42102 * 104.27813 * 181.40664 * 7 6 4 9 9 O 1.42103 * 104.27711 * 309.26044 * 7 6 4 10 10 C 1.81402 * 104.45061 * 65.33412 * 7 6 4 11 11 C 1.52999 * 109.46901 * 179.97438 * 10 7 6 12 12 C 1.53001 * 109.46798 * 179.97438 * 11 10 7 13 13 C 1.50703 * 109.47254 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99618 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00028 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99741 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47092 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47160 * 119.99983 * 17 15 13 20 20 H 1.48499 * 109.47639 * 240.00148 * 17 15 13 21 21 C 1.50698 * 109.47019 * 300.06398 * 4 2 1 22 22 C 1.38236 * 120.00133 * 260.00001 * 21 4 2 23 23 C 1.38237 * 120.00251 * 179.97438 * 22 21 4 24 24 C 1.38230 * 119.99808 * 359.96145 * 23 22 21 25 25 C 1.38241 * 120.00207 * 359.97438 * 24 23 22 26 26 C 1.38230 * 119.99902 * 0.07718 * 25 24 23 27 27 H 1.09005 * 109.47356 * 299.99662 * 1 2 3 28 28 H 1.08995 * 109.47162 * 60.00123 * 1 2 3 29 29 H 1.09006 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47069 * 239.99645 * 2 1 3 31 31 H 1.08994 * 109.47372 * 183.91013 * 3 2 1 32 32 H 1.08998 * 109.46846 * 303.91761 * 3 2 1 33 33 H 1.09005 * 109.46700 * 63.90921 * 3 2 1 34 34 H 0.97004 * 119.99576 * 275.89334 * 6 4 2 35 35 H 1.09001 * 109.46653 * 300.00384 * 10 7 6 36 36 H 1.08997 * 109.46565 * 59.99950 * 10 7 6 37 37 H 1.08996 * 109.46965 * 299.99667 * 11 10 7 38 38 H 1.08996 * 109.46859 * 60.00194 * 11 10 7 39 39 H 1.09002 * 109.47400 * 300.00023 * 12 11 10 40 40 H 1.09002 * 109.47413 * 60.00105 * 12 11 10 41 41 H 0.97005 * 119.99073 * 180.02562 * 16 15 13 42 42 H 1.07999 * 119.99919 * 359.97438 * 22 21 4 43 43 H 1.07995 * 119.99874 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.00228 * 179.71996 * 24 23 22 45 45 H 1.07999 * 119.99611 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.00074 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1299 -0.7209 1.2495 6 7 1.5529 -2.1030 1.2485 7 16 2.5125 -3.3188 0.6628 8 8 1.7134 -4.4872 0.7883 9 8 2.9314 -2.8513 -0.6121 10 6 3.9157 -3.3809 1.8107 11 6 4.8855 -4.4798 1.3716 12 6 6.0693 -4.5318 2.3395 13 6 7.0249 -5.6138 1.9067 14 1 6.8092 -6.2054 1.0294 15 6 8.1741 -5.8490 2.6314 16 7 8.4359 -5.1294 3.7007 17 14 9.3581 -7.1905 2.0954 18 1 8.8372 -7.8504 0.8712 19 1 10.6865 -6.5923 1.8075 20 1 9.4924 -8.1951 3.1808 21 6 1.5364 -0.0118 2.4797 22 6 2.3654 0.8567 3.1649 23 6 1.9033 1.5079 4.2932 24 6 0.6119 1.2913 4.7360 25 6 -0.2177 0.4239 4.0501 26 6 0.2448 -0.2282 2.9224 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1277 1.4433 -0.0701 32 1 1.6205 1.9761 -0.8528 33 1 1.7350 1.9356 0.9230 34 1 0.6683 -2.3055 1.5911 35 1 4.4298 -2.4198 1.8083 36 1 3.5535 -3.5968 2.8158 37 1 4.3710 -5.4407 1.3744 38 1 5.2476 -4.2644 0.3664 39 1 6.5837 -3.5708 2.3364 40 1 5.7075 -4.7470 3.3449 41 1 9.2446 -5.2947 4.2103 42 1 3.3742 1.0264 2.8186 43 1 2.5511 2.1860 4.8287 44 1 0.2522 1.7966 5.6202 45 1 -1.2266 0.2544 4.3964 46 1 -0.4032 -0.9062 2.3868 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109337288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:41 Heat of formation + Delta-G solvation = -94.897144 kcal Electronic energy + Delta-G solvation = -25924.522266 eV Core-core repulsion = 22325.328264 eV Total energy + Delta-G solvation = -3599.194001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87656 -38.28094 -37.74989 -37.04354 -36.48082 -34.17783 -33.96180 -31.91793 -31.47026 -29.67504 -28.04917 -26.66994 -25.63774 -23.42980 -22.81510 -22.41515 -20.85452 -20.18377 -18.91649 -18.61355 -18.02094 -17.17125 -17.04000 -16.50800 -16.39557 -16.18509 -16.05308 -15.67601 -15.13014 -14.89162 -14.51400 -14.26174 -14.16780 -14.08175 -13.56303 -13.35884 -13.22808 -13.21563 -13.15326 -13.05998 -12.92976 -12.87389 -12.78003 -12.61547 -12.41323 -12.25459 -12.14907 -11.85284 -11.80408 -11.76367 -11.44693 -11.34044 -11.08466 -10.58541 -10.40847 -9.72449 -9.58129 -8.23303 -6.34261 -0.76644 0.45920 0.55766 1.39381 1.40115 1.53402 1.75249 2.39441 2.71509 2.92973 3.10337 3.20378 3.57614 3.72333 3.85007 3.89565 3.98794 4.17558 4.19262 4.22556 4.30617 4.37430 4.37694 4.59653 4.63813 4.68090 4.82344 4.86534 4.89542 4.95750 5.05077 5.05935 5.07614 5.09939 5.21558 5.29237 5.44518 5.44770 5.50420 5.61721 5.62679 5.69208 5.72561 5.78790 6.04375 6.15758 6.18998 6.81443 7.35191 8.88392 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.003135 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.004034 B = 8930.641434 C = 9842.392746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.146 4.146 4 C 0.192 3.808 5 H 0.096 0.904 6 N -1.102 6.102 7 S 2.629 3.371 8 O -0.991 6.991 9 O -0.981 6.981 10 C -0.612 4.612 11 C -0.105 4.105 12 C 0.031 3.969 13 C -0.552 4.552 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.963 3.037 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.089 4.089 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.117 4.117 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.424 0.576 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.004 0.996 40 H 0.001 0.999 41 H 0.265 0.735 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 17.055 -0.815 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.085 3.915 5 H 0.114 0.886 6 N -0.862 5.862 7 S 2.724 3.276 8 O -0.981 6.981 9 O -0.970 6.970 10 C -0.742 4.742 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.590 4.590 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.788 3.212 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.091 4.091 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.135 4.135 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.261 0.739 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.149 0.851 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.852 16.580 -1.547 25.153 hybrid contribution 0.875 -0.579 0.714 1.270 sum -17.976 16.001 -0.833 24.081 Atomic orbital electron populations 1.21977 0.94217 1.01937 1.02682 1.21578 0.97575 0.97096 0.96879 1.21848 1.01294 0.94587 1.02667 1.19881 0.98592 0.79656 0.93353 0.88639 1.55510 1.30121 1.18532 1.82038 1.04294 0.75400 0.72536 0.75381 1.93537 1.67576 1.49391 1.87637 1.93546 1.83853 1.80753 1.38880 1.30529 1.17208 1.08836 1.17658 1.21306 0.96458 0.96019 1.00684 1.18962 0.91959 0.95911 0.93884 1.21764 1.06496 1.18773 1.11946 0.92176 1.25932 0.99873 0.98828 0.94901 1.70084 1.26974 1.41673 1.18207 0.85428 0.78464 0.78779 0.78579 1.18780 1.20159 1.20241 1.19801 0.95083 0.98275 0.95926 1.21240 1.00070 0.96919 0.95724 1.21389 0.96544 1.00005 0.96490 1.21469 0.94127 0.98513 1.00354 1.21403 1.00798 0.96876 0.95304 1.21146 0.95189 1.00164 0.96991 0.91113 0.92221 0.92743 0.90854 0.92337 0.91770 0.91734 0.73867 0.83809 0.83904 0.91673 0.91366 0.97768 0.98025 0.92639 0.85124 0.84608 0.84442 0.84297 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 7.95 71.98 0.57 -1.81 16 2 C -0.11 -2.05 2.94 -10.79 -0.03 -2.08 16 3 C -0.15 -2.28 8.90 71.98 0.64 -1.64 16 4 C 0.19 3.62 2.18 44.25 0.10 3.72 16 5 H 0.10 1.74 7.05 -2.39 -0.02 1.73 16 6 N -1.10 -22.55 4.63 -172.52 -0.80 -23.34 16 7 S 2.63 74.69 5.37 -56.49 -0.30 74.38 16 8 O -0.99 -34.13 18.08 -127.65 -2.31 -36.43 16 9 O -0.98 -32.80 17.19 -127.65 -2.19 -34.99 16 10 C -0.61 -18.56 5.97 71.98 0.43 -18.13 16 11 C -0.11 -4.31 5.16 30.59 0.16 -4.15 16 12 C 0.03 1.61 4.97 29.85 0.15 1.76 16 13 C -0.55 -31.51 9.11 25.60 0.23 -31.28 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.00 0.16 5.46 84.65 0.46 0.63 16 16 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 17 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 C -0.09 -1.52 3.80 -19.86 -0.08 -1.59 16 22 C -0.12 -2.01 8.60 22.27 0.19 -1.81 16 23 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 24 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 25 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 26 C -0.12 -1.78 6.94 22.27 0.15 -1.62 16 27 H 0.07 0.99 5.59 -2.38 -0.01 0.98 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.86 7.42 -2.38 -0.02 0.85 16 30 H 0.07 1.65 7.52 -2.39 -0.02 1.64 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.95 6.39 -2.38 -0.02 0.93 16 34 H 0.42 7.10 6.81 -96.74 -0.66 6.44 16 35 H 0.14 3.79 7.47 -2.39 -0.02 3.77 16 36 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 37 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 42 H 0.13 1.92 8.04 -2.91 -0.02 1.90 16 43 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 46 H 0.13 1.67 5.98 -2.91 -0.02 1.65 16 Total: -1.00 -73.63 379.18 0.66 -72.97 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.30 Total: 19.31 kcal Atomic # 6 Polarization: -66.37 SS G_CDS: 3.65 Total: -62.72 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -0.51 Total: -78.82 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -4.50 Total: -71.42 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 74.69 SS G_CDS: -0.30 Total: 74.38 kcal Total: -73.63 0.66 -72.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109337288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.923 kcal (2) G-P(sol) polarization free energy of solvation -73.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds