Wall clock time and date at job start Tue Mar 31 2020 15:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46900 * 2 1 4 4 C 1.52998 * 109.47304 * 120.00180 * 2 1 3 5 5 H 1.08996 * 109.46722 * 295.78235 * 4 2 1 6 6 N 1.46504 * 109.46877 * 55.78303 * 4 2 1 7 7 S 1.65596 * 119.99721 * 215.38789 * 6 4 2 8 8 O 1.42103 * 104.27624 * 180.02562 * 7 6 4 9 9 O 1.42101 * 104.27967 * 307.90862 * 7 6 4 10 10 C 1.81400 * 104.45177 * 63.97854 * 7 6 4 11 11 C 1.52998 * 109.47483 * 175.16128 * 10 7 6 12 12 C 1.52996 * 109.47394 * 180.02562 * 11 10 7 13 13 C 1.50699 * 109.47361 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99860 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00207 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00210 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99867 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47347 * 89.99569 * 17 15 13 19 19 H 1.48505 * 109.47039 * 209.99756 * 17 15 13 20 20 H 1.48501 * 109.47294 * 329.99447 * 17 15 13 21 21 C 1.50697 * 109.47082 * 175.78335 * 4 2 1 22 22 C 1.38242 * 119.99589 * 279.72727 * 21 4 2 23 23 C 1.38244 * 119.99332 * 179.81022 * 22 21 4 24 24 C 1.38233 * 120.00390 * 0.39973 * 23 22 21 25 25 C 1.38235 * 119.99818 * 359.84950 * 24 23 22 26 26 C 1.38231 * 120.00118 * 99.99867 * 21 4 2 27 27 H 1.08997 * 109.46810 * 302.69082 * 1 2 3 28 28 H 1.09002 * 109.47372 * 62.69248 * 1 2 3 29 29 H 1.08999 * 109.46690 * 182.68908 * 1 2 3 30 30 H 1.08998 * 109.46852 * 240.00804 * 2 1 3 31 31 H 1.09002 * 109.47500 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47868 * 300.00342 * 3 2 1 33 33 H 1.09007 * 109.47082 * 60.00231 * 3 2 1 34 34 H 0.97001 * 119.99843 * 35.38645 * 6 4 2 35 35 H 1.09002 * 109.46990 * 295.16607 * 10 7 6 36 36 H 1.09004 * 109.46985 * 55.15737 * 10 7 6 37 37 H 1.09006 * 109.46982 * 299.99983 * 11 10 7 38 38 H 1.08994 * 109.46799 * 60.00033 * 11 10 7 39 39 H 1.09002 * 109.47022 * 300.00444 * 12 11 10 40 40 H 1.09004 * 109.47041 * 59.99629 * 12 11 10 41 41 H 0.97003 * 120.00220 * 180.02562 * 16 15 13 42 42 H 1.07998 * 120.00457 * 359.97438 * 22 21 4 43 43 H 1.08003 * 119.99563 * 180.22899 * 23 22 21 44 44 H 1.07994 * 119.99799 * 179.83628 * 24 23 22 45 45 H 1.08000 * 120.00007 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00054 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7398 -0.1657 2.1375 6 7 1.4706 -2.0701 1.3010 7 16 1.0753 -2.7464 2.7599 8 8 0.5638 -4.0291 2.4245 9 8 2.2544 -2.6087 3.5410 10 6 -0.2452 -1.6849 3.4081 11 6 -0.7842 -2.2793 4.7108 12 6 -1.8984 -1.3843 5.2572 13 6 -2.4297 -1.9701 6.5399 14 1 -2.0141 -2.8886 6.9270 15 6 -3.4458 -1.3328 7.2199 16 7 -3.9092 -1.8437 8.3397 17 14 -4.1644 0.2563 6.5507 18 1 -5.3006 -0.0560 5.6471 19 1 -4.6444 1.0958 7.6778 20 1 -3.1192 0.9927 5.7953 21 6 3.5434 -0.8124 1.1980 22 6 4.1509 -1.7909 0.4335 23 6 5.5301 -1.8720 0.3835 24 6 6.3015 -0.9798 1.1044 25 6 5.6939 -0.0045 1.8729 26 6 4.3148 0.0790 1.9199 27 1 -0.3633 0.5550 0.8649 28 1 -0.3634 0.4715 -0.9131 29 1 -0.3633 -1.0265 0.0482 30 1 1.8933 -0.5137 -0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.3250 -2.5669 0.4807 35 1 0.1515 -0.6880 3.6003 36 1 -1.0512 -1.6204 2.6772 37 1 -1.1809 -3.2762 4.5185 38 1 0.0218 -2.3437 5.4416 39 1 -1.5021 -0.3872 5.4493 40 1 -2.7043 -1.3202 4.5261 41 1 -4.6244 -1.3956 8.8179 42 1 3.5482 -2.4904 -0.1267 43 1 6.0047 -2.6342 -0.2167 44 1 7.3789 -1.0449 1.0673 45 1 6.2966 0.6923 2.4364 46 1 3.8402 0.8410 2.5203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109337290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:45 Heat of formation + Delta-G solvation = -71.649633 kcal Electronic energy + Delta-G solvation = -26036.244676 eV Core-core repulsion = 22438.058762 eV Total energy + Delta-G solvation = -3598.185913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94908 -37.30889 -36.87412 -35.77715 -34.83158 -33.24210 -32.22808 -31.21585 -30.88652 -28.40261 -27.27770 -25.86572 -23.67354 -22.79569 -21.88859 -20.61170 -20.34002 -19.23533 -17.56251 -17.26260 -16.85584 -16.60912 -15.95407 -15.67894 -15.32284 -14.84183 -14.60394 -14.34645 -14.22166 -14.05734 -13.53660 -13.27160 -12.97229 -12.89547 -12.68760 -12.45531 -12.34634 -12.19515 -12.13334 -11.91336 -11.82442 -11.59963 -11.58855 -11.36538 -11.24362 -11.18055 -11.04739 -10.96764 -10.90885 -10.10841 -9.96180 -9.84644 -9.44905 -9.26852 -9.02582 -8.84678 -8.59849 -6.09345 -4.08705 0.37914 1.20142 1.28627 2.76830 3.25384 3.32962 3.34715 3.62931 3.86903 4.24992 4.39152 4.40401 4.51562 4.56759 4.75957 4.78480 4.85634 4.96487 5.00719 5.03062 5.09954 5.24306 5.26022 5.33092 5.36540 5.40793 5.52850 5.58925 5.67457 5.73333 5.78408 5.84868 5.89299 6.00720 6.03847 6.12581 6.24840 6.31555 6.37582 6.48178 6.65263 6.81181 6.86134 7.11021 7.25199 7.69967 8.46744 8.95216 9.51665 11.03996 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.003261 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.039324 B = 8584.941348 C = 9008.592448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.094 4.094 3 C -0.150 4.150 4 C 0.197 3.803 5 H 0.093 0.907 6 N -1.116 6.116 7 S 2.597 3.403 8 O -0.960 6.960 9 O -0.952 6.952 10 C -0.617 4.617 11 C -0.097 4.097 12 C -0.004 4.004 13 C -0.527 4.527 14 H 0.075 0.925 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.088 4.088 22 C -0.102 4.102 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.105 4.105 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.415 0.585 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.264 0.736 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.531 6.537 -21.446 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.114 4.114 3 C -0.208 4.208 4 C 0.090 3.910 5 H 0.111 0.889 6 N -0.872 5.872 7 S 2.693 3.307 8 O -0.951 6.951 9 O -0.941 6.941 10 C -0.748 4.748 11 C -0.136 4.136 12 C -0.042 4.042 13 C -0.565 4.565 14 H 0.093 0.907 15 C -0.134 4.134 16 N -0.539 5.539 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.090 4.090 22 C -0.120 4.120 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.123 4.123 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.249 0.751 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.837 5.871 -20.763 27.369 hybrid contribution -0.936 1.152 -0.614 1.607 sum 15.901 7.023 -21.377 27.553 Atomic orbital electron populations 1.21925 0.94283 1.02568 1.02416 1.21371 0.96359 0.96630 0.97057 1.21866 1.01663 0.94954 1.02281 1.19731 0.88931 0.82437 0.99949 0.88940 1.55858 1.79051 1.26358 1.25972 1.05429 0.76485 0.75254 0.73557 1.93589 1.82006 1.37148 1.82329 1.93607 1.44382 1.86553 1.69605 1.30634 1.17923 1.15620 1.10660 1.21304 1.00796 1.00560 0.90959 1.19522 0.92925 0.95123 0.96647 1.21136 1.18915 1.10724 1.05748 0.90731 1.25025 0.96282 0.97441 0.94658 1.69911 1.27807 1.39907 1.16256 0.86778 0.79706 0.84007 0.78776 1.20219 1.21261 1.19048 1.20109 0.95210 0.96194 0.97513 1.20879 0.94574 0.97754 0.98813 1.21117 0.93893 0.99175 0.99867 1.21133 0.99718 0.95728 0.97430 1.21107 0.94678 0.98785 0.99155 1.21001 0.93899 0.98913 0.98518 0.92094 0.92228 0.91978 0.90310 0.91990 0.92219 0.92238 0.75072 0.85597 0.85196 0.90886 0.91114 0.96207 0.96609 0.92614 0.86332 0.86258 0.86320 0.86071 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.04 37.16 0.34 -0.77 16 2 C -0.09 -0.67 2.59 -90.62 -0.23 -0.91 16 3 C -0.15 -1.00 8.89 37.16 0.33 -0.67 16 4 C 0.20 1.81 1.87 -69.08 -0.13 1.68 16 5 H 0.09 0.81 7.04 -51.93 -0.37 0.45 16 6 N -1.12 -11.10 3.69 -5.88 -0.02 -11.13 16 7 S 2.60 36.82 5.38 -107.50 -0.58 36.24 16 8 O -0.96 -16.52 18.08 -57.53 -1.04 -17.56 16 9 O -0.95 -16.50 17.84 -57.53 -1.03 -17.53 16 10 C -0.62 -8.72 5.89 37.16 0.22 -8.50 16 11 C -0.10 -1.88 5.16 -26.73 -0.14 -2.01 16 12 C 0.00 -0.08 4.04 -27.89 -0.11 -0.19 16 13 C -0.53 -14.97 9.66 -34.44 -0.33 -15.30 16 14 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 17 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 21 C -0.09 -0.91 4.20 -104.62 -0.44 -1.35 16 22 C -0.10 -1.03 9.33 -39.58 -0.37 -1.40 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.10 -1.06 8.75 -39.58 -0.35 -1.41 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 7.34 -51.93 -0.38 0.05 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.43 6.73 -51.93 -0.35 0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.42 3.24 8.50 -34.47 -0.29 2.95 16 35 H 0.13 1.52 7.54 -51.92 -0.39 1.13 16 36 H 0.13 1.55 8.14 -51.92 -0.42 1.13 16 37 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 40 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 42 H 0.12 1.02 7.54 -52.49 -0.40 0.63 16 43 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.05 8.04 -52.49 -0.42 0.63 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -36.07 385.30 -10.87 -46.94 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.60 Total: 1.12 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: -2.51 Total: -33.59 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.75 Total: -38.03 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -2.07 Total: -35.09 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 36.82 SS G_CDS: -0.58 Total: 36.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.07 -10.87 -46.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109337290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.710 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds