Wall clock time and date at job start Tue Mar 31 2020 14:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47002 * 2 1 4 4 C 1.38306 * 119.96581 * 270.02075 * 3 2 1 5 5 C 1.38257 * 120.14080 * 180.02562 * 4 3 2 6 6 C 1.38129 * 120.07194 * 359.67827 * 5 4 3 7 7 C 1.38849 * 119.92957 * 0.59406 * 6 5 4 8 8 N 1.39925 * 120.07653 * 179.70026 * 7 6 5 9 9 C 1.34780 * 119.99580 * 324.65239 * 8 7 6 10 10 O 1.21280 * 120.00284 * 4.52310 * 9 8 7 11 11 C 1.50704 * 119.99654 * 184.52319 * 9 8 7 12 12 C 1.50703 * 109.47016 * 179.97438 * 11 9 8 13 13 C 1.38301 * 119.93248 * 89.99634 * 12 11 9 14 14 C 1.38100 * 120.06972 * 179.97438 * 13 12 11 15 15 C 1.38887 * 119.92889 * 0.02863 * 14 13 12 16 16 O 1.35753 * 120.06615 * 179.97438 * 15 14 13 17 17 C 1.34823 * 117.00008 * 5.34086 * 16 15 14 18 18 H 1.08000 * 120.00393 * 354.95481 * 17 16 15 19 19 C 1.38652 * 120.00168 * 174.96544 * 17 16 15 20 20 N 1.31564 * 119.99997 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00265 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47173 * 60.00115 * 21 19 17 23 23 H 1.48508 * 109.47039 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47221 * 299.99591 * 21 19 17 25 25 C 1.38877 * 119.86244 * 0.27329 * 15 14 13 26 26 C 1.38102 * 119.93075 * 359.44707 * 25 15 14 27 27 C 1.38089 * 119.96286 * 89.99988 * 3 2 1 28 28 H 1.09003 * 109.46879 * 60.00310 * 1 2 3 29 29 H 1.08996 * 109.46866 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47072 * 300.00143 * 1 2 3 31 31 H 1.08998 * 109.47329 * 240.00331 * 2 1 3 32 32 H 1.09003 * 109.46879 * 119.99689 * 2 1 3 33 33 H 1.08003 * 119.92483 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.96172 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.03833 * 180.32162 * 6 5 4 36 36 H 0.96996 * 120.00277 * 144.64157 * 8 7 6 37 37 H 1.09001 * 109.46943 * 59.99799 * 11 9 8 38 38 H 1.08996 * 109.46903 * 299.99798 * 11 9 8 39 39 H 1.07995 * 119.96180 * 0.02562 * 13 12 11 40 40 H 1.07991 * 120.03448 * 180.02562 * 14 13 12 41 41 H 0.96997 * 119.99911 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.03346 * 179.72850 * 25 15 14 43 43 H 1.07997 * 119.96970 * 180.27999 * 26 25 15 44 44 H 1.07997 * 120.03783 * 0.03770 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2622 2.0723 -1.1982 5 6 2.7235 3.3756 -1.2024 6 6 2.9500 4.0336 -0.0092 7 6 2.7257 3.3805 1.1955 8 7 2.9601 4.0420 2.4060 9 6 3.9808 4.9162 2.5095 10 8 4.6449 5.1914 1.5328 11 6 4.2966 5.5516 3.8391 12 6 5.4727 6.4811 3.6848 13 6 5.2647 7.8093 3.3601 14 6 6.3404 8.6637 3.2186 15 6 7.6322 8.1878 3.4020 16 8 8.6916 9.0251 3.2630 17 6 8.4182 10.3289 3.0556 18 1 7.3960 10.6523 2.9253 19 6 9.4494 11.2547 3.0093 20 7 10.6946 10.8609 3.1683 21 14 9.0707 13.0611 2.7212 22 1 8.1882 13.5610 3.8060 23 1 10.3366 13.8376 2.7162 24 1 8.3863 13.2209 1.4131 25 6 7.8381 6.8521 3.7218 26 6 6.7580 6.0040 3.8677 27 6 2.2622 2.0711 1.1963 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0817 1.5615 -2.1325 34 1 2.9024 3.8815 -2.1397 35 1 3.3055 5.0534 -0.0131 36 1 2.3881 3.8716 3.1705 37 1 4.5403 4.7750 4.5641 38 1 3.4310 6.1150 4.1872 39 1 4.2599 8.1788 3.2180 40 1 6.1772 9.7008 2.9654 41 1 11.4159 11.5086 3.1363 42 1 8.8417 6.4781 3.8608 43 1 6.9172 4.9663 4.1208 44 1 2.0828 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110163080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:54 Heat of formation + Delta-G solvation = -21.178231 kcal Electronic energy + Delta-G solvation = -25479.208537 eV Core-core repulsion = 21747.767277 eV Total energy + Delta-G solvation = -3731.441261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63828 -39.19515 -38.58441 -36.54954 -35.18267 -33.82446 -32.47155 -31.52233 -30.16267 -30.09916 -29.16125 -26.62223 -25.13118 -24.27957 -22.71939 -22.01930 -21.94040 -20.55732 -19.88663 -17.96546 -17.72446 -16.92521 -16.82865 -16.34230 -15.70831 -15.10112 -14.82842 -14.52771 -14.42871 -14.20827 -14.01553 -13.78135 -13.69525 -13.47290 -13.41443 -13.29584 -12.70026 -12.62010 -12.44441 -12.08479 -11.84764 -11.81005 -11.52031 -11.37878 -11.24790 -11.10975 -10.84394 -10.74766 -10.63075 -10.42198 -10.36706 -9.71126 -9.31129 -8.89522 -8.79940 -8.22559 -8.13354 -7.15264 -6.42559 -4.01204 1.16100 1.24892 2.24897 2.27238 2.64583 3.04296 3.14857 3.16997 3.18587 3.65826 3.98853 4.46841 4.52051 4.61845 4.81877 4.90922 5.01528 5.05286 5.12343 5.15995 5.22224 5.24435 5.26160 5.32841 5.39875 5.45723 5.57158 5.63269 5.69403 5.73498 5.81552 5.86071 5.91546 6.20427 6.23585 6.26629 6.43496 6.44474 6.46155 6.71915 6.93012 6.94397 7.07009 7.24885 7.31482 7.37979 7.46992 7.85562 8.02519 8.16169 9.02886 9.73419 10.75398 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026793 B = 0.002041 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.799257 B =13715.387951 C =14082.215505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.068 4.068 4 C -0.138 4.138 5 C -0.098 4.098 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.684 5.684 9 C 0.508 3.492 10 O -0.499 6.499 11 C -0.077 4.077 12 C -0.174 4.174 13 C -0.056 4.056 14 C -0.233 4.233 15 C 0.158 3.842 16 O -0.177 6.177 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.192 4.192 26 C -0.058 4.058 27 C -0.148 4.148 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.408 0.592 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.270 0.730 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.781 -18.261 -2.204 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.068 4.068 4 C -0.156 4.156 5 C -0.117 4.117 6 C -0.146 4.146 7 C 0.059 3.941 8 N -0.330 5.330 9 C 0.296 3.704 10 O -0.371 6.371 11 C -0.117 4.117 12 C -0.175 4.175 13 C -0.074 4.074 14 C -0.252 4.252 15 C 0.104 3.896 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.211 4.211 26 C -0.077 4.077 27 C -0.168 4.168 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.157 0.843 36 H 0.244 0.756 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.740 -17.923 -2.846 26.815 hybrid contribution -0.481 0.842 0.190 0.988 sum -20.221 -17.081 -2.656 26.603 Atomic orbital electron populations 1.21746 0.94727 1.01617 1.02256 1.20532 0.96133 0.92581 1.02864 1.19628 0.98652 0.95957 0.92606 1.20978 1.01986 0.95296 0.97386 1.21069 0.98064 0.94692 0.97889 1.21355 1.00888 1.01440 0.90887 1.17780 0.98977 0.91245 0.86083 1.43728 1.32621 1.44033 1.12640 1.21331 0.78720 0.78186 0.92194 1.90745 1.48656 1.58803 1.38859 1.20405 0.98989 0.98881 0.93412 1.18592 0.92657 0.93827 1.12456 1.20504 0.97473 0.92644 0.96766 1.21100 0.92247 1.00936 1.10929 1.19395 0.87567 0.90791 0.91873 1.83976 1.28352 1.18424 1.77290 1.21281 0.94871 0.79776 1.50856 0.89120 1.25291 0.94500 1.00062 0.96683 1.70034 0.98792 1.35262 1.45674 0.85783 0.78037 0.80406 0.79207 1.19517 1.20281 1.19505 1.20154 0.98894 0.91887 1.10162 1.20400 0.91558 0.97666 0.98029 1.20728 1.05136 0.92731 0.98226 0.92516 0.92467 0.92575 0.90969 0.91094 0.86268 0.85788 0.84298 0.75640 0.88631 0.88681 0.87803 0.85564 0.91989 0.86520 0.87381 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 37.16 0.37 -0.46 16 2 C -0.08 -0.55 6.06 -27.88 -0.17 -0.72 16 3 C -0.07 -0.62 5.13 -104.65 -0.54 -1.16 16 4 C -0.14 -1.33 9.70 -39.55 -0.38 -1.71 16 5 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 6 C -0.13 -1.64 8.69 -39.40 -0.34 -1.99 16 7 C 0.15 1.79 6.29 -83.69 -0.53 1.26 16 8 N -0.68 -7.05 5.34 -9.86 -0.05 -7.10 16 9 C 0.51 6.90 7.67 -10.98 -0.08 6.81 16 10 O -0.50 -9.14 13.49 5.56 0.07 -9.07 16 11 C -0.08 -0.92 5.83 -29.03 -0.17 -1.09 16 12 C -0.17 -2.99 4.38 -104.57 -0.46 -3.45 16 13 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 14 C -0.23 -5.22 9.17 -39.39 -0.36 -5.59 16 15 C 0.16 3.94 6.65 -39.10 -0.26 3.68 16 16 O -0.18 -5.18 9.76 0.06 0.00 -5.18 16 17 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 18 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 21 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 C -0.19 -4.22 9.99 -39.39 -0.39 -4.61 16 26 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 27 C -0.15 -1.42 9.62 -39.39 -0.38 -1.80 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.14 2.10 6.25 -52.49 -0.33 1.77 16 36 H 0.41 2.64 8.82 -40.82 -0.36 2.28 16 37 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -34.49 375.94 -9.12 -43.61 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.88 Total: 6.26 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -4.66 Total: -25.08 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.71 Total: -31.98 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.08 Total: -14.25 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.49 -9.12 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110163080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.428 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds