Wall clock time and date at job start Tue Mar 31 2020 14:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47002 * 2 1 4 4 C 1.38306 * 119.96581 * 270.02075 * 3 2 1 5 5 C 1.38257 * 120.14080 * 180.02562 * 4 3 2 6 6 C 1.38129 * 120.07194 * 359.67827 * 5 4 3 7 7 C 1.38849 * 119.92957 * 0.59406 * 6 5 4 8 8 N 1.39925 * 120.07653 * 179.70026 * 7 6 5 9 9 C 1.34780 * 119.99580 * 324.65239 * 8 7 6 10 10 O 1.21280 * 120.00284 * 4.52310 * 9 8 7 11 11 C 1.50704 * 119.99654 * 184.52319 * 9 8 7 12 12 C 1.50703 * 109.47016 * 179.97438 * 11 9 8 13 13 C 1.38301 * 119.93248 * 89.99634 * 12 11 9 14 14 C 1.38100 * 120.06972 * 179.97438 * 13 12 11 15 15 C 1.38887 * 119.92889 * 0.02863 * 14 13 12 16 16 O 1.35753 * 120.06615 * 179.97438 * 15 14 13 17 17 C 1.34823 * 117.00008 * 5.34086 * 16 15 14 18 18 H 1.08000 * 120.00393 * 354.95481 * 17 16 15 19 19 C 1.38652 * 120.00168 * 174.96544 * 17 16 15 20 20 N 1.31564 * 119.99997 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00265 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47173 * 60.00115 * 21 19 17 23 23 H 1.48508 * 109.47039 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47221 * 299.99591 * 21 19 17 25 25 C 1.38877 * 119.86244 * 0.27329 * 15 14 13 26 26 C 1.38102 * 119.93075 * 359.44707 * 25 15 14 27 27 C 1.38089 * 119.96286 * 89.99988 * 3 2 1 28 28 H 1.09003 * 109.46879 * 60.00310 * 1 2 3 29 29 H 1.08996 * 109.46866 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47072 * 300.00143 * 1 2 3 31 31 H 1.08998 * 109.47329 * 240.00331 * 2 1 3 32 32 H 1.09003 * 109.46879 * 119.99689 * 2 1 3 33 33 H 1.08003 * 119.92483 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.96172 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.03833 * 180.32162 * 6 5 4 36 36 H 0.96996 * 120.00277 * 144.64157 * 8 7 6 37 37 H 1.09001 * 109.46943 * 59.99799 * 11 9 8 38 38 H 1.08996 * 109.46903 * 299.99798 * 11 9 8 39 39 H 1.07995 * 119.96180 * 0.02562 * 13 12 11 40 40 H 1.07991 * 120.03448 * 180.02562 * 14 13 12 41 41 H 0.96997 * 119.99911 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.03346 * 179.72850 * 25 15 14 43 43 H 1.07997 * 119.96970 * 180.27999 * 26 25 15 44 44 H 1.07997 * 120.03783 * 0.03770 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2622 2.0723 -1.1982 5 6 2.7235 3.3756 -1.2024 6 6 2.9500 4.0336 -0.0092 7 6 2.7257 3.3805 1.1955 8 7 2.9601 4.0420 2.4060 9 6 3.9808 4.9162 2.5095 10 8 4.6449 5.1914 1.5328 11 6 4.2966 5.5516 3.8391 12 6 5.4727 6.4811 3.6848 13 6 5.2647 7.8093 3.3601 14 6 6.3404 8.6637 3.2186 15 6 7.6322 8.1878 3.4020 16 8 8.6916 9.0251 3.2630 17 6 8.4182 10.3289 3.0556 18 1 7.3960 10.6523 2.9253 19 6 9.4494 11.2547 3.0093 20 7 10.6946 10.8609 3.1683 21 14 9.0707 13.0611 2.7212 22 1 8.1882 13.5610 3.8060 23 1 10.3366 13.8376 2.7162 24 1 8.3863 13.2209 1.4131 25 6 7.8381 6.8521 3.7218 26 6 6.7580 6.0040 3.8677 27 6 2.2622 2.0711 1.1963 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0817 1.5615 -2.1325 34 1 2.9024 3.8815 -2.1397 35 1 3.3055 5.0534 -0.0131 36 1 2.3881 3.8716 3.1705 37 1 4.5403 4.7750 4.5641 38 1 3.4310 6.1150 4.1872 39 1 4.2599 8.1788 3.2180 40 1 6.1772 9.7008 2.9654 41 1 11.4159 11.5086 3.1363 42 1 8.8417 6.4781 3.8608 43 1 6.9172 4.9663 4.1208 44 1 2.0828 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110163080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:53 Heat of formation + Delta-G solvation = -42.066126 kcal Electronic energy + Delta-G solvation = -25480.114304 eV Core-core repulsion = 21747.767277 eV Total energy + Delta-G solvation = -3732.347028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62138 -40.73033 -39.71793 -38.22399 -36.09712 -34.56804 -34.37743 -32.94024 -31.79145 -30.95664 -29.97812 -28.13070 -26.98806 -24.91597 -23.68197 -23.64203 -22.89990 -21.91608 -20.84601 -19.85547 -18.92534 -18.50672 -17.79540 -17.17753 -16.72391 -16.40620 -16.27473 -15.99278 -15.68731 -15.54751 -15.31931 -15.03406 -14.81153 -14.48223 -14.42781 -14.31956 -14.19266 -13.96396 -13.60111 -13.25022 -12.96586 -12.88358 -12.67365 -12.47741 -12.45286 -12.30355 -12.28425 -12.14248 -11.93444 -11.68948 -11.28110 -11.19169 -10.86231 -10.72139 -9.77455 -9.67699 -9.07486 -8.91419 -8.47893 -6.16335 0.33204 0.44885 0.60563 0.65523 1.33214 1.44266 1.49994 1.65559 2.12451 2.17183 2.83515 2.85821 3.16597 3.50792 3.78455 3.85000 3.95889 4.04381 4.07965 4.18738 4.25708 4.37240 4.43319 4.47087 4.55838 4.58545 4.63674 4.68404 4.70684 4.76959 4.79523 5.07558 5.11980 5.13358 5.14242 5.16798 5.29370 5.40182 5.41316 5.47803 5.55537 5.61633 5.70776 5.72023 5.76011 6.01920 6.12881 6.21851 6.50938 6.96284 7.23351 7.77494 8.75249 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026793 B = 0.002041 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.799257 B =13715.387951 C =14082.215505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.068 4.068 4 C -0.140 4.140 5 C -0.112 4.112 6 C -0.155 4.155 7 C 0.137 3.863 8 N -0.663 5.663 9 C 0.509 3.491 10 O -0.557 6.557 11 C -0.073 4.073 12 C -0.148 4.148 13 C -0.059 4.059 14 C -0.245 4.245 15 C 0.113 3.887 16 O -0.234 6.234 17 C -0.415 4.415 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.255 1.255 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.208 4.208 26 C -0.057 4.057 27 C -0.143 4.143 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.429 0.571 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.273 0.727 42 H 0.111 0.889 43 H 0.147 0.853 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.771 -20.821 -1.284 32.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.069 4.069 4 C -0.158 4.158 5 C -0.131 4.131 6 C -0.175 4.175 7 C 0.042 3.958 8 N -0.310 5.310 9 C 0.298 3.702 10 O -0.433 6.433 11 C -0.112 4.112 12 C -0.149 4.149 13 C -0.077 4.077 14 C -0.264 4.264 15 C 0.062 3.938 16 O -0.140 6.140 17 C -0.491 4.491 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.179 1.179 23 H -0.194 1.194 24 H -0.184 1.184 25 C -0.227 4.227 26 C -0.074 4.074 27 C -0.163 4.163 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.269 0.731 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.164 0.836 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.824 -20.553 -1.891 31.521 hybrid contribution 0.473 1.252 -0.103 1.342 sum -23.351 -19.302 -1.994 30.361 Atomic orbital electron populations 1.21733 0.93949 1.02458 1.02024 1.20592 0.96669 0.90815 1.03848 1.20027 0.97450 0.97178 0.92219 1.21264 1.01113 0.94628 0.98803 1.21230 0.98520 0.95640 0.97662 1.21284 1.02849 1.00726 0.92642 1.17923 0.99784 0.92202 0.85865 1.43453 1.31837 1.42709 1.13043 1.21497 0.78691 0.78137 0.91828 1.90763 1.50912 1.60938 1.40728 1.20534 0.97954 0.99247 0.93495 1.19225 0.94240 0.94007 1.07394 1.20946 0.97969 0.93110 0.95664 1.21233 0.92490 1.01352 1.11360 1.19955 0.88060 0.91649 0.94094 1.83936 1.30528 1.19120 1.80459 1.21784 0.95706 0.80299 1.51348 0.88238 1.26628 0.94057 1.05355 0.96113 1.70186 1.00081 1.37156 1.48486 0.84639 0.78317 0.73443 0.79729 1.17929 1.19447 1.18384 1.20443 1.00205 0.91470 1.10605 1.20883 0.91092 0.98877 0.96594 1.21012 1.03846 0.91779 0.99658 0.92991 0.91127 0.92609 0.90215 0.89976 0.84242 0.85280 0.87260 0.73110 0.84557 0.84733 0.84279 0.86484 0.91823 0.87075 0.83566 0.83234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.90 71.98 0.71 -0.45 16 2 C -0.08 -0.79 6.06 29.85 0.18 -0.61 16 3 C -0.07 -1.04 5.13 -19.88 -0.10 -1.15 16 4 C -0.14 -2.43 9.70 22.29 0.22 -2.21 16 5 C -0.11 -2.46 10.04 22.25 0.22 -2.23 16 6 C -0.15 -4.04 8.69 22.39 0.19 -3.85 16 7 C 0.14 2.89 6.29 38.15 0.24 3.13 16 8 N -0.66 -11.37 5.34 -303.50 -1.62 -12.99 16 9 C 0.51 12.24 7.67 87.66 0.67 12.92 16 10 O -0.56 -19.95 13.49 -3.03 -0.04 -19.99 16 11 C -0.07 -1.37 5.83 29.10 0.17 -1.20 16 12 C -0.15 -4.64 4.38 -19.83 -0.09 -4.73 16 13 C -0.06 -2.12 9.69 22.25 0.22 -1.91 16 14 C -0.25 -11.32 9.17 22.39 0.21 -11.11 16 15 C 0.11 5.95 6.65 22.58 0.15 6.10 16 16 O -0.23 -14.75 9.76 -22.70 -0.22 -14.97 16 17 C -0.42 -25.17 9.49 67.92 0.64 -24.52 16 18 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 19 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 20 N -0.92 -58.12 13.67 21.61 0.30 -57.83 16 21 Si 1.02 44.14 29.55 68.60 2.03 46.17 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 25 C -0.21 -9.45 9.99 22.39 0.22 -9.23 16 26 C -0.06 -1.99 9.69 22.25 0.22 -1.78 16 27 C -0.14 -2.28 9.62 22.39 0.22 -2.06 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 32 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.11 3.48 6.25 -2.91 -0.02 3.46 16 36 H 0.43 3.45 8.82 -92.71 -0.82 2.64 16 37 H 0.14 1.61 8.08 -2.39 -0.02 1.59 16 38 H 0.13 1.62 8.08 -2.39 -0.02 1.60 16 39 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 40 H 0.12 5.48 5.64 -2.92 -0.02 5.47 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 43 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -84.34 375.94 5.40 -78.94 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.21 Total: 26.52 kcal Atomic # 6 Polarization: -50.60 SS G_CDS: 4.76 Total: -45.84 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.32 Total: -70.82 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.26 Total: -34.97 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -84.34 5.40 -78.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110163080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.871 kcal (2) G-P(sol) polarization free energy of solvation -84.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds