Wall clock time and date at job start Tue Mar 31 2020 14:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47083 * 2 1 4 4 C 1.38134 * 120.03787 * 265.00289 * 3 2 1 5 5 C 1.38258 * 120.07177 * 180.02562 * 4 3 2 6 6 C 1.38307 * 120.14193 * 359.95334 * 5 4 3 7 7 C 1.38082 * 120.06988 * 0.02562 * 6 5 4 8 8 C 1.38849 * 120.03677 * 85.02217 * 3 2 1 9 9 N 1.39931 * 120.06829 * 359.95280 * 8 3 2 10 10 C 1.34782 * 119.99498 * 145.38408 * 9 8 3 11 11 O 1.21280 * 120.00413 * 4.41690 * 10 9 8 12 12 C 1.50704 * 119.99528 * 184.41234 * 10 9 8 13 13 C 1.50694 * 109.46897 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93478 * 269.72746 * 13 12 10 15 15 C 1.38105 * 120.07148 * 179.72470 * 14 13 12 16 16 C 1.38871 * 119.92817 * 0.57349 * 15 14 13 17 17 O 1.35755 * 120.06961 * 179.68262 * 16 15 14 18 18 C 1.34828 * 117.00287 * 185.42818 * 17 16 15 19 19 H 1.08003 * 119.99680 * 354.95215 * 18 17 16 20 20 C 1.38645 * 120.00419 * 174.95672 * 18 17 16 21 21 N 1.31560 * 119.99691 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47311 * 89.99734 * 22 20 18 24 24 H 1.48501 * 109.46972 * 209.99902 * 22 20 18 25 25 H 1.48498 * 109.47138 * 329.99671 * 22 20 18 26 26 C 1.38880 * 119.86261 * 359.70174 * 16 15 14 27 27 C 1.38099 * 119.93167 * 0.02562 * 26 16 15 28 28 H 1.09013 * 109.47194 * 59.99711 * 1 2 3 29 29 H 1.09000 * 109.47686 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47289 * 299.99908 * 1 2 3 31 31 H 1.09003 * 109.46907 * 240.00208 * 2 1 3 32 32 H 1.08996 * 109.47179 * 120.00078 * 2 1 3 33 33 H 1.07999 * 119.96414 * 0.02562 * 4 3 2 34 34 H 1.08009 * 119.92907 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.96228 * 179.74887 * 6 5 4 36 36 H 1.07996 * 120.03866 * 179.97438 * 7 6 5 37 37 H 0.96991 * 120.00279 * 325.39077 * 9 8 3 38 38 H 1.08998 * 109.47271 * 300.00377 * 12 10 9 39 39 H 1.08996 * 109.46882 * 60.00676 * 12 10 9 40 40 H 1.08001 * 119.96448 * 359.97438 * 14 13 12 41 41 H 1.08005 * 120.03398 * 180.27356 * 15 14 13 42 42 H 0.96999 * 119.99868 * 179.97438 * 21 20 18 43 43 H 1.08008 * 120.03604 * 179.97438 * 26 16 15 44 44 H 1.07998 * 119.96364 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0380 -1.1913 5 6 2.8224 3.3413 -1.1920 6 6 2.9556 4.0316 -0.0010 7 6 2.6283 3.4205 1.1932 8 6 2.1656 2.1108 1.1975 9 7 1.8330 1.4887 2.4059 10 6 2.5343 1.7674 3.5227 11 8 3.4007 2.6158 3.4989 12 6 2.2417 1.0249 4.8011 13 6 3.1565 1.5212 5.8908 14 6 4.3811 0.9118 6.0946 15 6 5.2242 1.3679 7.0889 16 6 4.8360 2.4322 7.8921 17 8 5.6598 2.8787 8.8744 18 6 5.1770 3.8387 9.6889 19 1 4.2084 4.2750 9.4943 20 6 5.9240 4.2659 10.7760 21 7 7.1038 3.7341 11.0131 22 14 5.2549 5.5954 11.9047 23 1 4.4762 4.9673 13.0021 24 1 6.3834 6.3709 12.4793 25 1 4.3731 6.5049 11.1298 26 6 3.6032 3.0384 7.6887 27 6 2.7671 2.5813 6.6892 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.2574 1.5019 -2.1231 34 1 3.0792 3.8215 -2.1248 35 1 3.3201 5.0482 -0.0046 36 1 2.7328 3.9598 2.1230 37 1 1.0979 0.8569 2.4399 38 1 1.2051 1.1959 5.0914 39 1 2.4047 -0.0417 4.6471 40 1 4.6802 0.0808 5.4730 41 1 6.1823 0.8944 7.2446 42 1 7.6266 4.0332 11.7735 43 1 3.2983 3.8661 8.3121 44 1 1.8081 3.0521 6.5308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110167499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:57 Heat of formation + Delta-G solvation = -19.532006 kcal Electronic energy + Delta-G solvation = -25919.027700 eV Core-core repulsion = 22187.657826 eV Total energy + Delta-G solvation = -3731.369875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77184 -39.18545 -38.49961 -36.50757 -35.05415 -34.01604 -32.49250 -31.57070 -30.14897 -30.00708 -29.21775 -26.62433 -25.14181 -24.13943 -23.13992 -21.95840 -21.25780 -20.85180 -20.04133 -17.97378 -17.86052 -17.00705 -16.90782 -16.10557 -15.70474 -15.03710 -14.86282 -14.52657 -14.32677 -14.25788 -13.92909 -13.86788 -13.75806 -13.46931 -13.44720 -13.31738 -12.69616 -12.56782 -12.43017 -12.13617 -11.87506 -11.84080 -11.52990 -11.28695 -11.26010 -11.17696 -10.84858 -10.76000 -10.61085 -10.41460 -10.39104 -9.70587 -9.31066 -8.88176 -8.80462 -8.20604 -8.13526 -7.15461 -6.42876 -4.01447 1.14086 1.28012 2.24723 2.27030 2.64848 3.04707 3.14920 3.15949 3.19994 3.66653 3.98645 4.46209 4.51916 4.57390 4.82086 4.90131 4.95830 5.03147 5.10808 5.12595 5.21857 5.25118 5.26507 5.32830 5.39260 5.47723 5.56041 5.62419 5.67302 5.73248 5.83053 5.85886 5.94383 6.18819 6.23417 6.30129 6.39637 6.43313 6.47126 6.71676 6.92820 6.94684 7.07002 7.24789 7.31123 7.37834 7.46862 7.85325 8.02394 8.15855 9.02770 9.73331 10.75225 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.002272 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.892047 B =12320.976437 C =12813.007632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.138 4.138 6 C -0.106 4.106 7 C -0.120 4.120 8 C 0.153 3.847 9 N -0.682 5.682 10 C 0.507 3.493 11 O -0.498 6.498 12 C -0.078 4.078 13 C -0.174 4.174 14 C -0.058 4.058 15 C -0.191 4.191 16 C 0.158 3.842 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.232 4.232 27 C -0.055 4.055 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.407 0.593 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.270 0.730 43 H 0.127 0.873 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.552 -6.653 -21.721 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.156 4.156 6 C -0.125 4.125 7 C -0.140 4.140 8 C 0.059 3.941 9 N -0.328 5.328 10 C 0.295 3.705 11 O -0.370 6.370 12 C -0.117 4.117 13 C -0.175 4.175 14 C -0.077 4.077 15 C -0.211 4.211 16 C 0.104 3.896 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.252 4.252 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.159 0.841 37 H 0.243 0.757 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.471 -6.089 -21.387 25.999 hybrid contribution -0.661 0.454 0.493 0.941 sum -14.132 -5.635 -20.893 25.845 Atomic orbital electron populations 1.21782 0.94759 1.01835 1.02207 1.20479 0.95998 0.92616 1.03145 1.19668 1.03654 0.96124 0.92231 1.20797 0.99501 0.95103 0.96753 1.21092 1.01454 0.95013 0.98079 1.21080 0.99317 1.00048 0.92036 1.21377 0.99952 0.93131 0.99517 1.17626 0.99874 0.91698 0.84906 1.43757 1.35618 1.46071 1.07380 1.21334 0.80909 0.83514 0.84722 1.90740 1.30957 1.31138 1.84182 1.20407 1.00863 1.00033 0.90434 1.18582 0.96890 1.01858 1.00157 1.20397 0.92891 0.98306 0.96066 1.20153 1.01518 0.99551 0.99843 1.19391 0.89286 0.91702 0.89241 1.83978 1.37420 1.50183 1.36491 1.21329 1.04467 1.14616 1.06309 0.89074 1.25290 0.95580 0.98711 0.96981 1.70043 1.10553 1.40925 1.28256 0.85709 0.78425 0.79584 0.79700 1.19884 1.20262 1.19206 1.21102 0.96242 1.04807 1.03023 1.20501 0.98024 0.94652 0.94203 0.92311 0.92139 0.92856 0.90717 0.91086 0.86028 0.86194 0.85859 0.84149 0.75701 0.88704 0.88650 0.87389 0.86524 0.92040 0.85562 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.82 37.16 0.37 -0.46 16 2 C -0.08 -0.59 5.47 -27.88 -0.15 -0.74 16 3 C -0.11 -1.10 5.15 -104.43 -0.54 -1.64 16 4 C -0.10 -0.93 9.68 -39.61 -0.38 -1.32 16 5 C -0.14 -1.31 10.04 -39.55 -0.40 -1.71 16 6 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 7 C -0.12 -1.57 8.70 -39.39 -0.34 -1.92 16 8 C 0.15 1.80 6.29 -83.69 -0.53 1.27 16 9 N -0.68 -7.14 4.78 -9.86 -0.05 -7.19 16 10 C 0.51 6.90 7.67 -10.98 -0.08 6.82 16 11 O -0.50 -9.10 13.45 5.56 0.07 -9.03 16 12 C -0.08 -0.93 5.83 -29.04 -0.17 -1.10 16 13 C -0.17 -2.98 4.38 -104.58 -0.46 -3.44 16 14 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 15 C -0.19 -4.20 9.99 -39.40 -0.39 -4.59 16 16 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 17 O -0.18 -5.18 9.76 0.04 0.00 -5.18 16 18 C -0.39 -11.12 9.49 30.88 0.29 -10.83 16 19 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 22 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 C -0.23 -5.21 9.17 -39.39 -0.36 -5.57 16 27 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16 28 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.29 7.29 -51.93 -0.38 -0.09 16 31 H 0.07 0.45 8.05 -51.93 -0.42 0.04 16 32 H 0.07 0.49 7.43 -51.93 -0.39 0.10 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.14 2.13 6.20 -52.49 -0.33 1.80 16 37 H 0.41 2.91 7.04 -40.82 -0.29 2.62 16 38 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.13 2.82 5.64 -52.48 -0.30 2.53 16 44 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -34.31 371.72 -9.03 -43.34 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.72 Total: 6.61 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -4.67 Total: -25.04 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.71 Total: -32.08 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.08 Total: -14.21 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.31 -9.03 -43.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110167499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.806 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds