Wall clock time and date at job start Tue Mar 31 2020 14:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47083 * 2 1 4 4 C 1.38134 * 120.03787 * 265.00289 * 3 2 1 5 5 C 1.38258 * 120.07177 * 180.02562 * 4 3 2 6 6 C 1.38307 * 120.14193 * 359.95334 * 5 4 3 7 7 C 1.38082 * 120.06988 * 0.02562 * 6 5 4 8 8 C 1.38849 * 120.03677 * 85.02217 * 3 2 1 9 9 N 1.39931 * 120.06829 * 359.95280 * 8 3 2 10 10 C 1.34782 * 119.99498 * 145.38408 * 9 8 3 11 11 O 1.21280 * 120.00413 * 4.41690 * 10 9 8 12 12 C 1.50704 * 119.99528 * 184.41234 * 10 9 8 13 13 C 1.50694 * 109.46897 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93478 * 269.72746 * 13 12 10 15 15 C 1.38105 * 120.07148 * 179.72470 * 14 13 12 16 16 C 1.38871 * 119.92817 * 0.57349 * 15 14 13 17 17 O 1.35755 * 120.06961 * 179.68262 * 16 15 14 18 18 C 1.34828 * 117.00287 * 185.42818 * 17 16 15 19 19 H 1.08003 * 119.99680 * 354.95215 * 18 17 16 20 20 C 1.38645 * 120.00419 * 174.95672 * 18 17 16 21 21 N 1.31560 * 119.99691 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47311 * 89.99734 * 22 20 18 24 24 H 1.48501 * 109.46972 * 209.99902 * 22 20 18 25 25 H 1.48498 * 109.47138 * 329.99671 * 22 20 18 26 26 C 1.38880 * 119.86261 * 359.70174 * 16 15 14 27 27 C 1.38099 * 119.93167 * 0.02562 * 26 16 15 28 28 H 1.09013 * 109.47194 * 59.99711 * 1 2 3 29 29 H 1.09000 * 109.47686 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47289 * 299.99908 * 1 2 3 31 31 H 1.09003 * 109.46907 * 240.00208 * 2 1 3 32 32 H 1.08996 * 109.47179 * 120.00078 * 2 1 3 33 33 H 1.07999 * 119.96414 * 0.02562 * 4 3 2 34 34 H 1.08009 * 119.92907 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.96228 * 179.74887 * 6 5 4 36 36 H 1.07996 * 120.03866 * 179.97438 * 7 6 5 37 37 H 0.96991 * 120.00279 * 325.39077 * 9 8 3 38 38 H 1.08998 * 109.47271 * 300.00377 * 12 10 9 39 39 H 1.08996 * 109.46882 * 60.00676 * 12 10 9 40 40 H 1.08001 * 119.96448 * 359.97438 * 14 13 12 41 41 H 1.08005 * 120.03398 * 180.27356 * 15 14 13 42 42 H 0.96999 * 119.99868 * 179.97438 * 21 20 18 43 43 H 1.08008 * 120.03604 * 179.97438 * 26 16 15 44 44 H 1.07998 * 119.96364 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0380 -1.1913 5 6 2.8224 3.3413 -1.1920 6 6 2.9556 4.0316 -0.0010 7 6 2.6283 3.4205 1.1932 8 6 2.1656 2.1108 1.1975 9 7 1.8330 1.4887 2.4059 10 6 2.5343 1.7674 3.5227 11 8 3.4007 2.6158 3.4989 12 6 2.2417 1.0249 4.8011 13 6 3.1565 1.5212 5.8908 14 6 4.3811 0.9118 6.0946 15 6 5.2242 1.3679 7.0889 16 6 4.8360 2.4322 7.8921 17 8 5.6598 2.8787 8.8744 18 6 5.1770 3.8387 9.6889 19 1 4.2084 4.2750 9.4943 20 6 5.9240 4.2659 10.7760 21 7 7.1038 3.7341 11.0131 22 14 5.2549 5.5954 11.9047 23 1 4.4762 4.9673 13.0021 24 1 6.3834 6.3709 12.4793 25 1 4.3731 6.5049 11.1298 26 6 3.6032 3.0384 7.6887 27 6 2.7671 2.5813 6.6892 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.2574 1.5019 -2.1231 34 1 3.0792 3.8215 -2.1248 35 1 3.3201 5.0482 -0.0046 36 1 2.7328 3.9598 2.1230 37 1 1.0979 0.8569 2.4399 38 1 1.2051 1.1959 5.0914 39 1 2.4047 -0.0417 4.6471 40 1 4.6802 0.0808 5.4730 41 1 6.1823 0.8944 7.2446 42 1 7.6266 4.0332 11.7735 43 1 3.2983 3.8661 8.3121 44 1 1.8081 3.0521 6.5308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110167499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:56 Heat of formation + Delta-G solvation = -40.031999 kcal Electronic energy + Delta-G solvation = -25919.916647 eV Core-core repulsion = 22187.657826 eV Total energy + Delta-G solvation = -3732.258821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72864 -40.75272 -39.65649 -38.19032 -35.93117 -34.72188 -34.41262 -33.00766 -31.79245 -30.85605 -30.03177 -28.12528 -26.99217 -24.73584 -24.10660 -23.64818 -22.44784 -21.75452 -21.19761 -19.85637 -18.94699 -18.60264 -17.99059 -16.94035 -16.69244 -16.40075 -16.27019 -16.02530 -15.67370 -15.52295 -15.31547 -14.96961 -14.73377 -14.57106 -14.45595 -14.40409 -14.21776 -13.99166 -13.60468 -13.06708 -12.98117 -12.86203 -12.70136 -12.56764 -12.47398 -12.30384 -12.28387 -12.12536 -11.85137 -11.79624 -11.28947 -11.19198 -10.86711 -10.72388 -9.77454 -9.67372 -9.04857 -8.91334 -8.48225 -6.16530 0.32931 0.46711 0.60542 0.65336 1.33285 1.42894 1.51249 1.65221 2.12078 2.16967 2.83355 2.87111 3.16376 3.50773 3.77227 3.84253 3.94577 4.03992 4.05057 4.18547 4.23376 4.32892 4.45983 4.51022 4.52538 4.58328 4.63120 4.64976 4.69469 4.79195 4.81537 5.06421 5.09891 5.13570 5.14385 5.17064 5.29228 5.40999 5.43951 5.51140 5.55389 5.63475 5.65230 5.70784 5.75824 6.01994 6.13658 6.21494 6.48128 6.96223 7.21249 7.77494 8.75266 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.002272 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.892047 B =12320.976437 C =12813.007632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.110 4.110 4 C -0.105 4.105 5 C -0.136 4.136 6 C -0.123 4.123 7 C -0.148 4.148 8 C 0.133 3.867 9 N -0.661 5.661 10 C 0.509 3.491 11 O -0.555 6.555 12 C -0.074 4.074 13 C -0.147 4.147 14 C -0.056 4.056 15 C -0.207 4.207 16 C 0.113 3.887 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.255 1.255 26 C -0.244 4.244 27 C -0.059 4.059 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.425 0.575 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.111 0.889 42 H 0.273 0.727 43 H 0.117 0.883 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.977 -8.365 -24.697 31.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.113 4.113 4 C -0.123 4.123 5 C -0.155 4.155 6 C -0.141 4.141 7 C -0.168 4.168 8 C 0.039 3.961 9 N -0.309 5.309 10 C 0.298 3.702 11 O -0.432 6.432 12 C -0.113 4.113 13 C -0.148 4.148 14 C -0.074 4.074 15 C -0.226 4.226 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.264 4.264 27 C -0.077 4.077 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.128 0.872 37 H 0.265 0.735 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.974 -7.856 -24.434 30.771 hybrid contribution 0.235 0.807 1.006 1.311 sum -16.739 -7.048 -23.428 29.644 Atomic orbital electron populations 1.21772 0.93564 1.02852 1.02161 1.20561 0.96908 0.90660 1.03998 1.20013 1.02416 0.97368 0.91463 1.21224 0.98301 0.94989 0.97815 1.21417 1.00414 0.95364 0.98263 1.21251 0.99891 1.00691 0.92310 1.21312 1.02109 0.94354 0.99043 1.17766 1.00890 0.91518 0.85958 1.43482 1.35413 1.45632 1.06347 1.21500 0.80260 0.82727 0.85708 1.90758 1.33643 1.33692 1.85089 1.20542 1.01483 1.01809 0.87514 1.19204 0.96622 0.99389 0.99607 1.20877 0.92656 0.98998 0.94897 1.20438 1.02295 0.99234 1.00673 1.19951 0.90555 0.93553 0.89680 1.83938 1.39559 1.51931 1.38609 1.21820 1.05145 1.15092 1.06976 0.88251 1.26623 0.95763 1.01346 0.98436 1.70192 1.12525 1.43613 1.29640 0.84570 0.78023 0.76200 0.77289 1.18488 1.19517 1.17853 1.21226 0.96125 1.04779 1.04232 1.20936 0.98813 0.94938 0.92972 0.92490 0.90586 0.92863 0.89431 0.90741 0.83128 0.83761 0.85390 0.87150 0.73529 0.84797 0.84579 0.83568 0.87068 0.91818 0.86516 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.82 71.98 0.71 -0.32 16 2 C -0.08 -0.82 5.47 29.85 0.16 -0.66 16 3 C -0.11 -1.80 5.15 -19.74 -0.10 -1.90 16 4 C -0.11 -1.57 9.68 22.25 0.22 -1.35 16 5 C -0.14 -2.30 10.04 22.29 0.22 -2.07 16 6 C -0.12 -2.70 10.04 22.25 0.22 -2.48 16 7 C -0.15 -3.91 8.70 22.39 0.19 -3.72 16 8 C 0.13 2.88 6.29 38.15 0.24 3.12 16 9 N -0.66 -11.84 4.78 -303.49 -1.45 -13.29 16 10 C 0.51 12.40 7.67 87.66 0.67 13.07 16 11 O -0.56 -19.95 13.45 -3.03 -0.04 -19.99 16 12 C -0.07 -1.42 5.83 29.10 0.17 -1.25 16 13 C -0.15 -4.63 4.38 -19.84 -0.09 -4.72 16 14 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 15 C -0.21 -9.39 9.99 22.39 0.22 -9.17 16 16 C 0.11 5.95 6.65 22.58 0.15 6.10 16 17 O -0.23 -14.72 9.76 -22.78 -0.22 -14.95 16 18 C -0.41 -25.09 9.49 67.92 0.64 -24.44 16 19 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 21 N -0.92 -58.15 13.67 21.61 0.30 -57.86 16 22 Si 1.02 44.16 29.55 68.60 2.03 46.19 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 26 C -0.24 -11.27 9.17 22.39 0.21 -11.07 16 27 C -0.06 -2.11 9.69 22.25 0.22 -1.89 16 28 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.37 7.29 -2.39 -0.02 0.36 16 31 H 0.09 0.67 8.05 -2.39 -0.02 0.65 16 32 H 0.07 0.70 7.43 -2.39 -0.02 0.68 16 33 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.11 3.55 6.20 -2.91 -0.02 3.53 16 37 H 0.43 4.23 7.04 -92.71 -0.65 3.58 16 38 H 0.13 1.66 8.08 -2.39 -0.02 1.64 16 39 H 0.14 1.64 8.08 -2.39 -0.02 1.62 16 40 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 41 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 44 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -84.02 371.72 5.73 -78.29 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.38 Total: 27.08 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 4.74 Total: -45.48 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.16 Total: -71.15 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.26 Total: -34.93 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -84.02 5.73 -78.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110167499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.259 kcal (2) G-P(sol) polarization free energy of solvation -84.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds