Wall clock time and date at job start Tue Mar 31 2020 14:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.47018 * 2 1 4 4 C 1.50701 * 109.47171 * 119.99857 * 2 1 3 5 5 C 1.38235 * 119.99598 * 119.99822 * 4 2 1 6 6 C 1.38240 * 119.99738 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99775 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99560 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46874 * 90.00182 * 8 7 6 10 10 C 1.46506 * 120.00098 * 84.99996 * 9 8 7 11 11 S 1.65599 * 120.00111 * 264.99675 * 9 8 7 12 12 O 1.42097 * 104.27550 * 26.07137 * 11 9 8 13 13 O 1.42103 * 104.27486 * 153.93037 * 11 9 8 14 14 C 1.81404 * 104.45045 * 270.00057 * 11 9 8 15 15 C 1.52997 * 109.46887 * 179.97438 * 14 11 9 16 16 C 1.50702 * 109.46719 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00410 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99814 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99947 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47081 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47006 * 119.99947 * 20 18 16 23 23 H 1.48492 * 109.47168 * 239.99805 * 20 18 16 24 24 C 1.38237 * 120.00076 * 0.25398 * 7 6 5 25 25 C 1.38232 * 120.00065 * 300.02615 * 4 2 1 26 26 H 1.09003 * 109.47197 * 300.00035 * 1 2 3 27 27 H 1.09003 * 109.46838 * 60.00116 * 1 2 3 28 28 H 1.08993 * 109.46733 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47367 * 240.00205 * 2 1 3 30 30 H 1.08999 * 109.46975 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46861 * 300.00253 * 3 2 1 32 32 H 1.08999 * 109.46509 * 60.00226 * 3 2 1 33 33 H 1.08000 * 120.00185 * 0.02562 * 5 4 2 34 34 H 1.07993 * 119.99963 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47323 * 330.00195 * 8 7 6 36 36 H 1.09001 * 109.47037 * 209.99697 * 8 7 6 37 37 H 1.09001 * 109.47060 * 270.00243 * 10 9 8 38 38 H 1.09004 * 109.47073 * 29.99732 * 10 9 8 39 39 H 1.09000 * 109.47212 * 149.99814 * 10 9 8 40 40 H 1.09002 * 109.47042 * 299.99928 * 14 11 9 41 41 H 1.09000 * 109.47032 * 60.00128 * 14 11 9 42 42 H 1.09002 * 109.47335 * 299.99888 * 15 14 11 43 43 H 1.09000 * 109.47067 * 60.00289 * 15 14 11 44 44 H 0.96999 * 119.99558 * 180.02562 * 19 18 16 45 45 H 1.07999 * 119.99687 * 179.72834 * 24 7 6 46 46 H 1.08000 * 120.00076 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8271 -1.8343 1.1036 6 6 3.2875 -2.4863 2.2323 7 6 2.9527 -2.0145 3.4878 8 6 3.4541 -2.7256 4.7182 9 7 4.7444 -2.1587 5.1181 10 6 4.7888 -0.9624 5.9627 11 16 6.1529 -2.8700 4.6155 12 8 5.8001 -3.5310 3.4081 13 8 7.1013 -1.8118 4.6214 14 6 6.5383 -4.0776 5.9131 15 6 7.8343 -4.8098 5.5595 16 6 8.1542 -5.8135 6.6372 17 1 7.4985 -5.9188 7.4889 18 6 9.2840 -6.5973 6.5359 19 7 10.0822 -6.4694 5.4985 20 14 9.6809 -7.8409 7.8722 21 1 8.6328 -7.7900 8.9229 22 1 9.7247 -9.2034 7.2831 23 1 11.0003 -7.5185 8.4723 24 6 2.1532 -0.8940 3.6147 25 6 1.6980 -0.2384 2.4860 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.0883 -2.2031 0.1227 34 1 3.9080 -3.3646 2.1332 35 1 3.5753 -3.7868 4.5006 36 1 2.7356 -2.6006 5.5283 37 1 4.7994 -0.0730 5.3327 38 1 3.9103 -0.9402 6.6077 39 1 5.6895 -0.9840 6.5762 40 1 6.6605 -3.5612 6.8653 41 1 5.7243 -4.7981 5.9923 42 1 7.7117 -5.3263 4.6074 43 1 8.6485 -4.0896 5.4800 44 1 10.8768 -7.0211 5.4272 45 1 1.8881 -0.5281 4.5956 46 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111324911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:16 Heat of formation + Delta-G solvation = -68.686565 kcal Electronic energy + Delta-G solvation = -25498.148605 eV Core-core repulsion = 21900.091179 eV Total energy + Delta-G solvation = -3598.057425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.75009 -36.87716 -36.57558 -35.39147 -34.93419 -33.89412 -31.16578 -30.93987 -30.63188 -27.38665 -27.17683 -25.63733 -24.76830 -22.81903 -22.11617 -21.51639 -20.00115 -18.47691 -17.47982 -16.68334 -16.50751 -16.00556 -15.74524 -15.27318 -15.06132 -14.57985 -14.52896 -14.11154 -14.00514 -13.72920 -13.44400 -13.36453 -13.28495 -12.77050 -12.61628 -12.51440 -12.30627 -12.08948 -11.98925 -11.75949 -11.57166 -11.49248 -11.39752 -11.20181 -11.15796 -11.10160 -10.96471 -10.84667 -10.67122 -10.39750 -10.38596 -9.77725 -9.33896 -8.86515 -8.84436 -8.54125 -8.51653 -6.13458 -4.18998 0.72503 1.32751 1.46819 3.05701 3.24511 3.31796 3.35181 3.80022 4.30467 4.39306 4.49172 4.58529 4.61264 4.70630 4.88875 4.96518 4.99200 5.06448 5.21713 5.22601 5.31566 5.36247 5.44665 5.50519 5.51607 5.56896 5.61425 5.64539 5.67107 5.73901 5.74983 5.83224 5.98615 5.98930 6.01374 6.03990 6.18701 6.44985 6.48216 6.60674 6.65307 6.73511 7.06125 7.29263 7.35150 7.79814 8.16666 8.84719 9.45833 10.97595 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.002568 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.903236 B =10899.482681 C =11116.037665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.077 4.077 5 C -0.123 4.123 6 C -0.092 4.092 7 C -0.113 4.113 8 C 0.166 3.834 9 N -1.005 6.005 10 C 0.097 3.903 11 S 2.588 3.412 12 O -0.960 6.960 13 O -0.963 6.963 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.519 4.519 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.102 4.102 25 C -0.125 4.125 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.265 0.735 45 H 0.118 0.882 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.136 13.330 -5.424 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.078 4.078 5 C -0.141 4.141 6 C -0.110 4.110 7 C -0.114 4.114 8 C 0.040 3.960 9 N -0.841 5.841 10 C -0.048 4.048 11 S 2.687 3.313 12 O -0.950 6.950 13 O -0.954 6.954 14 C -0.724 4.724 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.121 4.121 25 C -0.143 4.143 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.136 0.864 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.537 13.528 -6.282 24.580 hybrid contribution 0.165 -0.920 1.314 1.612 sum -19.372 12.609 -4.968 23.642 Atomic orbital electron populations 1.21846 0.94439 1.01960 1.01721 1.20136 0.95835 0.96057 0.95616 1.21855 1.01443 0.95113 1.01709 1.19864 0.97663 0.95682 0.94555 1.21106 0.98405 0.95779 0.98817 1.21511 0.97459 1.00441 0.91607 1.20260 0.98598 0.97103 0.95481 1.20140 0.84937 0.96984 0.93908 1.57779 1.20686 1.39426 1.66187 1.21394 1.02571 0.86988 0.93868 1.05833 0.72590 0.75823 0.77069 1.93498 1.82031 1.77075 1.42428 1.93538 1.60708 1.53721 1.87415 1.30502 1.10616 1.14851 1.16392 1.18964 0.87598 0.95734 0.98810 1.21044 1.08618 1.19735 1.06501 0.92001 1.25082 0.96068 0.97387 0.96020 1.69967 1.14008 1.40001 1.28856 0.86413 0.78362 0.80941 0.81575 1.19646 1.20778 1.20782 1.20969 0.97688 0.95133 0.98315 1.20849 1.01278 1.00142 0.91982 0.92526 0.92555 0.92538 0.90527 0.92427 0.92520 0.92520 0.86202 0.83919 0.89104 0.89786 0.92841 0.91417 0.90981 0.86369 0.86287 0.94814 0.94930 0.92572 0.86389 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.01 37.16 0.33 -0.70 16 2 C -0.06 -0.50 3.09 -91.77 -0.28 -0.78 16 3 C -0.14 -1.14 9.01 37.16 0.33 -0.81 16 4 C -0.08 -0.84 4.78 -104.62 -0.50 -1.34 16 5 C -0.12 -1.53 9.67 -39.58 -0.38 -1.91 16 6 C -0.09 -1.28 9.12 -39.58 -0.36 -1.64 16 7 C -0.11 -1.43 5.46 -104.62 -0.57 -2.00 16 8 C 0.17 1.94 5.44 -5.19 -0.03 1.91 16 9 N -1.01 -13.68 3.10 -123.04 -0.38 -14.06 16 10 C 0.10 1.10 10.24 59.85 0.61 1.71 16 11 S 2.59 46.88 5.32 -107.50 -0.57 46.30 16 12 O -0.96 -19.04 14.82 -57.54 -0.85 -19.90 16 13 O -0.96 -20.45 17.09 -57.54 -0.98 -21.43 16 14 C -0.59 -11.28 6.12 37.16 0.23 -11.06 16 15 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 20 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 25 C -0.12 -1.30 8.71 -39.58 -0.34 -1.64 16 26 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 33 H 0.12 1.31 7.95 -52.49 -0.42 0.90 16 34 H 0.14 2.18 6.48 -52.49 -0.34 1.84 16 35 H 0.09 1.05 7.55 -51.93 -0.39 0.66 16 36 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.55 7.94 -51.93 -0.41 0.13 16 39 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 40 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 41 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.12 0.99 7.10 -52.49 -0.37 0.61 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -34.19 387.12 -10.83 -45.03 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.69 Total: 0.17 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: -1.90 Total: -32.33 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.36 Total: -39.83 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.84 Total: -41.33 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 46.88 SS G_CDS: -0.57 Total: 46.30 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.19 -10.83 -45.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.661 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds