Wall clock time and date at job start Tue Mar 31 2020 14:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.47018 * 2 1 4 4 C 1.50701 * 109.47171 * 119.99857 * 2 1 3 5 5 C 1.38235 * 119.99598 * 119.99822 * 4 2 1 6 6 C 1.38240 * 119.99738 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99775 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99560 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46874 * 90.00182 * 8 7 6 10 10 C 1.46506 * 120.00098 * 84.99996 * 9 8 7 11 11 S 1.65599 * 120.00111 * 264.99675 * 9 8 7 12 12 O 1.42097 * 104.27550 * 26.07137 * 11 9 8 13 13 O 1.42103 * 104.27486 * 153.93037 * 11 9 8 14 14 C 1.81404 * 104.45045 * 270.00057 * 11 9 8 15 15 C 1.52997 * 109.46887 * 179.97438 * 14 11 9 16 16 C 1.50702 * 109.46719 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00410 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99814 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99947 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47081 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47006 * 119.99947 * 20 18 16 23 23 H 1.48492 * 109.47168 * 239.99805 * 20 18 16 24 24 C 1.38237 * 120.00076 * 0.25398 * 7 6 5 25 25 C 1.38232 * 120.00065 * 300.02615 * 4 2 1 26 26 H 1.09003 * 109.47197 * 300.00035 * 1 2 3 27 27 H 1.09003 * 109.46838 * 60.00116 * 1 2 3 28 28 H 1.08993 * 109.46733 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47367 * 240.00205 * 2 1 3 30 30 H 1.08999 * 109.46975 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46861 * 300.00253 * 3 2 1 32 32 H 1.08999 * 109.46509 * 60.00226 * 3 2 1 33 33 H 1.08000 * 120.00185 * 0.02562 * 5 4 2 34 34 H 1.07993 * 119.99963 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47323 * 330.00195 * 8 7 6 36 36 H 1.09001 * 109.47037 * 209.99697 * 8 7 6 37 37 H 1.09001 * 109.47060 * 270.00243 * 10 9 8 38 38 H 1.09004 * 109.47073 * 29.99732 * 10 9 8 39 39 H 1.09000 * 109.47212 * 149.99814 * 10 9 8 40 40 H 1.09002 * 109.47042 * 299.99928 * 14 11 9 41 41 H 1.09000 * 109.47032 * 60.00128 * 14 11 9 42 42 H 1.09002 * 109.47335 * 299.99888 * 15 14 11 43 43 H 1.09000 * 109.47067 * 60.00289 * 15 14 11 44 44 H 0.96999 * 119.99558 * 180.02562 * 19 18 16 45 45 H 1.07999 * 119.99687 * 179.72834 * 24 7 6 46 46 H 1.08000 * 120.00076 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8271 -1.8343 1.1036 6 6 3.2875 -2.4863 2.2323 7 6 2.9527 -2.0145 3.4878 8 6 3.4541 -2.7256 4.7182 9 7 4.7444 -2.1587 5.1181 10 6 4.7888 -0.9624 5.9627 11 16 6.1529 -2.8700 4.6155 12 8 5.8001 -3.5310 3.4081 13 8 7.1013 -1.8118 4.6214 14 6 6.5383 -4.0776 5.9131 15 6 7.8343 -4.8098 5.5595 16 6 8.1542 -5.8135 6.6372 17 1 7.4985 -5.9188 7.4889 18 6 9.2840 -6.5973 6.5359 19 7 10.0822 -6.4694 5.4985 20 14 9.6809 -7.8409 7.8722 21 1 8.6328 -7.7900 8.9229 22 1 9.7247 -9.2034 7.2831 23 1 11.0003 -7.5185 8.4723 24 6 2.1532 -0.8940 3.6147 25 6 1.6980 -0.2384 2.4860 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.0883 -2.2031 0.1227 34 1 3.9080 -3.3646 2.1332 35 1 3.5753 -3.7868 4.5006 36 1 2.7356 -2.6006 5.5283 37 1 4.7994 -0.0730 5.3327 38 1 3.9103 -0.9402 6.6077 39 1 5.6895 -0.9840 6.5762 40 1 6.6605 -3.5612 6.8653 41 1 5.7243 -4.7981 5.9923 42 1 7.7117 -5.3263 4.6074 43 1 8.6485 -4.0896 5.4800 44 1 10.8768 -7.0211 5.4272 45 1 1.8881 -0.5281 4.5956 46 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111324911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:15 Heat of formation + Delta-G solvation = -89.536940 kcal Electronic energy + Delta-G solvation = -25499.052745 eV Core-core repulsion = 21900.091179 eV Total energy + Delta-G solvation = -3598.961565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60448 -38.20718 -37.72540 -36.93445 -35.90541 -35.77775 -33.13524 -31.82270 -31.48642 -28.06641 -27.96529 -27.60207 -25.77871 -23.72405 -23.46348 -22.89792 -20.80073 -19.84312 -19.04966 -18.26466 -17.65168 -17.31911 -16.89664 -16.53931 -16.35668 -16.01748 -15.76264 -15.12269 -14.94785 -14.77226 -14.48762 -14.39787 -14.27258 -14.15209 -13.87197 -13.72176 -13.33314 -13.19849 -13.15752 -12.97432 -12.95405 -12.83490 -12.78444 -12.64980 -12.38929 -12.27015 -12.09735 -11.99940 -11.98989 -11.74345 -11.59609 -11.45473 -11.13570 -10.67172 -10.00748 -9.75790 -9.44351 -8.27469 -6.41795 -0.72178 0.41831 0.56487 1.40087 1.40877 1.54283 1.80902 2.37043 2.85750 2.91063 3.05828 3.21614 3.72570 3.75021 3.91400 4.02974 4.04761 4.09691 4.18574 4.25100 4.33637 4.49203 4.57036 4.60919 4.67481 4.72739 4.74888 4.79946 4.82583 4.98782 4.99999 5.01260 5.01890 5.11065 5.23262 5.24785 5.25865 5.27124 5.35392 5.40398 5.58042 5.62433 5.67054 5.78870 5.81177 6.04594 6.18281 6.72280 7.28554 8.85062 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.002568 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.903236 B =10899.482681 C =11116.037665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.142 4.142 4 C -0.079 4.079 5 C -0.143 4.143 6 C -0.120 4.120 7 C -0.127 4.127 8 C 0.158 3.842 9 N -0.993 5.993 10 C 0.086 3.914 11 S 2.607 3.393 12 O -0.984 6.984 13 O -0.999 6.999 14 C -0.588 4.588 15 C 0.021 3.979 16 C -0.538 4.538 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.254 1.254 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.099 4.099 25 C -0.126 4.126 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.051 0.949 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.006 0.994 43 H 0.003 0.997 44 H 0.267 0.733 45 H 0.149 0.851 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.950 14.522 -3.352 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.079 4.079 5 C -0.161 4.161 6 C -0.139 4.139 7 C -0.129 4.129 8 C 0.034 3.966 9 N -0.831 5.831 10 C -0.058 4.058 11 S 2.704 3.296 12 O -0.974 6.974 13 O -0.990 6.990 14 C -0.720 4.720 15 C -0.018 4.018 16 C -0.577 4.577 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.575 5.575 20 Si 0.799 3.201 21 H -0.178 1.178 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.117 4.117 25 C -0.143 4.143 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.076 0.924 45 H 0.167 0.833 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.353 14.716 -4.203 27.091 hybrid contribution 0.954 -1.205 0.592 1.647 sum -21.399 13.511 -3.611 25.564 Atomic orbital electron populations 1.21815 0.93035 1.01908 1.02779 1.20193 0.96926 0.96203 0.94454 1.21843 1.00495 0.94713 1.02847 1.20159 0.96754 0.94956 0.96053 1.21253 0.99387 0.96824 0.98598 1.21494 0.98570 1.00574 0.93281 1.20404 0.99408 0.98097 0.94984 1.20457 0.84436 0.96613 0.95092 1.57372 1.19649 1.39690 1.66423 1.21716 1.04614 0.85494 0.94016 1.04976 0.73130 0.75083 0.76377 1.93474 1.82558 1.77679 1.43719 1.93483 1.62987 1.54731 1.87759 1.30388 1.07956 1.15595 1.18018 1.18813 0.90108 0.95374 0.97509 1.21551 1.08942 1.19966 1.07194 0.90531 1.26160 0.95981 0.99743 0.98555 1.70116 1.14736 1.41404 1.31230 0.85241 0.78490 0.77826 0.78558 1.17795 1.20336 1.20345 1.21309 0.96447 0.94016 0.99941 1.21210 1.00947 1.00646 0.91531 0.91785 0.91187 0.93152 0.90840 0.93903 0.91002 0.91789 0.86137 0.86532 0.89628 0.85458 0.93035 0.87037 0.91231 0.84214 0.83950 0.97563 0.97893 0.92384 0.83291 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.01 71.98 0.65 -1.04 16 2 C -0.06 -0.94 3.09 -11.54 -0.04 -0.97 16 3 C -0.14 -1.99 9.01 71.98 0.65 -1.34 16 4 C -0.08 -1.64 4.78 -19.87 -0.09 -1.73 16 5 C -0.14 -3.66 9.67 22.27 0.22 -3.44 16 6 C -0.12 -3.48 9.12 22.27 0.20 -3.28 16 7 C -0.13 -3.06 5.46 -19.87 -0.11 -3.17 16 8 C 0.16 3.37 5.44 85.63 0.47 3.84 16 9 N -0.99 -25.35 3.10 -543.20 -1.68 -27.03 16 10 C 0.09 1.68 10.24 127.77 1.31 2.99 16 11 S 2.61 96.05 5.32 -56.49 -0.30 95.75 16 12 O -0.98 -40.93 14.82 -127.65 -1.89 -42.82 16 13 O -1.00 -43.62 17.09 -127.65 -2.18 -45.80 16 14 C -0.59 -22.44 6.12 71.98 0.44 -22.00 16 15 C 0.02 1.11 4.98 29.85 0.15 1.25 16 16 C -0.54 -30.01 9.11 25.60 0.23 -29.77 16 17 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 18 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 19 N -0.94 -57.47 13.29 21.45 0.28 -57.19 16 20 Si 0.98 43.43 29.54 68.60 2.03 45.46 16 21 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.10 -1.85 9.70 22.27 0.22 -1.64 16 25 C -0.13 -2.29 8.71 22.27 0.19 -2.10 16 26 H 0.06 0.69 7.39 -2.39 -0.02 0.67 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 1.19 7.88 -2.39 -0.02 1.17 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.80 7.39 -2.39 -0.02 0.78 16 33 H 0.12 2.87 7.95 -2.91 -0.02 2.84 16 34 H 0.12 3.89 6.48 -2.91 -0.02 3.87 16 35 H 0.09 1.91 7.55 -2.39 -0.02 1.89 16 36 H 0.13 1.63 7.91 -2.39 -0.02 1.61 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.23 7.94 -2.38 -0.02 1.21 16 39 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 40 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 41 H 0.14 4.69 8.14 -2.39 -0.02 4.68 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 46 H 0.14 1.84 7.10 -2.91 -0.02 1.82 16 Total: -1.00 -77.54 387.12 2.14 -75.41 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.94 Total: 18.52 kcal Atomic # 6 Polarization: -67.24 SS G_CDS: 4.94 Total: -62.29 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -1.40 Total: -84.22 kcal Atomic # 8 Polarization: -84.55 SS G_CDS: -4.07 Total: -88.63 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 96.05 SS G_CDS: -0.30 Total: 95.75 kcal Total: -77.54 2.14 -75.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.129 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds